Package evaluation to test DataManifest on Julia 1.14.0-DEV.2064 (1d5dcac2d2*) started at 2026-04-21T14:12:02.585 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.43s ################################################################################ # Installation # Installing DataManifest... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [b8ee69ef] + DataManifest v0.12.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [b8ee69ef] + DataManifest v0.12.2 [5c2747f8] + URIs v1.6.1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.19.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [458c3c95] + OpenSSL_jll v3.5.6+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.69.0+0 Installation completed after 1.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.6 s ✓ DataManifest 2.5 s ✓ DimensionalData → DimensionalDataCategoricalArraysExt 2.9 s ✓ DimensionalData → DimensionalDataDiskArraysExt 6.1 s ✓ Parquet 6.5 s ✓ NetCDF_jll 16.6 s ✓ NCDatasets 6 dependencies successfully precompiled in 38 seconds. 134 already precompiled. Precompilation completed after 72.53s ################################################################################ # Testing # Testing DataManifest Status `/tmp/jl_UU8D0g/Project.toml` [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [a93c6f00] DataFrames v1.8.2 [b8ee69ef] DataManifest v0.12.2 [0703355e] DimensionalData v0.30.1 [682c06a0] JSON v1.5.0 [85f8d34a] NCDatasets v0.14.15 [bac558e1] OrderedCollections v1.8.1 [626c502c] Parquet v0.8.6 [5c2747f8] URIs v1.6.1 [ddb6d928] YAML v0.4.16 [a5390f91] ZipFile v0.10.1 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [56ddb016] Logging v1.11.0 [ea8e919c] SHA v1.0.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_UU8D0g/Manifest.toml` [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.8 [336ed68f] CSV v0.10.16 [324d7699] CategoricalArrays v1.1.0 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [1fbeeb36] CommonDataModel v0.4.3 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [b8ee69ef] DataManifest v0.12.2 [864edb3b] DataStructures v0.19.4 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [abce61dc] Decimals v0.4.1 [0703355e] DimensionalData v0.30.1 [3c3547ce] DiskArrays v0.4.19 [411431e0] Extents v0.1.6 [48062228] FilePathsBase v0.9.24 [842dd82b] InlineStrings v1.4.5 [85a1e053] Interfaces v0.3.2 [8197267c] IntervalSets v0.7.14 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.5.0 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [1724a1d5] LittleEndianBase128 v0.3.0 [3da0fdf6] MPIPreferences v0.1.12 [e1d29d7a] Missings v1.2.0 [85f8d34a] NCDatasets v0.14.15 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [626c502c] Parquet v0.8.6 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.9 [59d4ed8c] Snappy v0.4.3 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8d9c9c80] Thrift v0.8.6 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.16 [a5390f91] ZipFile v0.10.1 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.13.0+1 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [b5ada748] MPIABI_jll v0.1.4+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.1000.0+0 [fe0851c0] OpenMPI_jll v5.0.11+0 [815b9798] ThriftJuliaCompiler_jll v0.12.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.3+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.6+0 [337d8026] libzip_jll v1.11.3+0 [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.2+0 [fe1e1685] snappy_jll v1.2.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ DataManifest Downloading dataset: to /tmp/DataManifest_test_ipfjyl/cmd-test/templating [ DataManifest Downloading dataset: to /tmp/DataManifest_test_ipfjyl/julia-cmd-test/result [ DataManifest Downloading dataset: https://example.com/supplement.csv to /tmp/DataManifest_test_ipfjyl/julia-vars/out [ DataManifest Downloading dataset: to /tmp/DataManifest_test_ipfjyl/julia-modules-test/out [ DataManifest Downloading dataset: to /tmp/DataManifest_test_ipfjyl/julia-includes-test/out [ DataManifest Dataset already exists at: /tmp/DataManifest_test_ipfjyl/julia-includes-test/out [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_ipfjyl/test-data/data_file.txt [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_ipfjyl/test-data/data_file.txt load_dataset: Error During Test at /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/runtests.jl:150 Got exception outside of a @test IOError: could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_ipfjyl/test-data/`: no such file or directory (ENOENT) Stacktrace: [1] _spawn_primitive(file::String, cmd::Cmd, stdio::Memory{Union{RawFD, Base.IOServer, Base.SyncCloseFD, IO}}) @ Base ./process.jl:148 [2] _spawn @ ./process.jl:165 [inlined] [3] (::Colon)(start::Int64, stop::Int64) @ Base ./process.jl:157 [inlined] [4] setup_stdios(f::Base.var"#_spawn##0#_spawn##1"{Cmd}, stdios::Vector{Union{RawFD, Base.FileRedirect, Base.IOServer, IO}}) @ Base ./process.jl:244 [5] spawn_opts_inherit() @ Base ./process.jl:156 [inlined] [6] run(::Cmd; wait::Bool) @ Base ./process.jl:524 [7] gethostname() @ Base.Libc ./process.jl:522 [inlined] [8] _download_dataset(dataset::DatasetEntry, download_path::String; project_root::String, overwrite::Bool, required_paths_by_ref::Dict{String, String}, required_paths_ordered::Vector{String}, loaders_julia_modules::Vector{String}) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:257 [9] _download_dataset @ ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:200 [inlined] [10] download_dataset(db::Database, dataset::DatasetEntry; extract::Nothing, overwrite::Bool, kwargs::@Kwargs{}) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:321 [11] download_dataset @ ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:279 [inlined] [12] #load_dataset#18 @ ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:406 [inlined] [13] load_dataset(db::Database, name::String; loader::Function, kwargs::@Kwargs{}) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:402 [14] top-level scope @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:22 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [16] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:151 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [18] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:156 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:517 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [23] _start() @ Base ./client.jl:593 [ DataManifest Downloading dataset: https://download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv to /tmp/DataManifest_test_ipfjyl/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv [ DataManifest Downloading dataset: https://doi.pangaea.de/10.1594/PANGAEA.930512?format=zip to /tmp/DataManifest_test_ipfjyl/doi.pangaea.de/10.1594/PANGAEA.930512 [ DataManifest Dataset already exists at: /tmp/DataManifest_test_ipfjyl/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_ipfjyl/test-data/data_file.txt [ Info: Skipping download_datasets test (offline or error): Base.IOError("could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_ipfjyl/test-data/`: no such file or directory (ENOENT)", -2) [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_ipfjyl/test-data/data_file.txt delete_dataset: Test Failed at /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/runtests.jl:282 Expression: isfile(path) Evaluated: isfile("/tmp/DataManifest_test_ipfjyl/test-data/data_file.txt") Stacktrace: [1] top-level scope @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:273 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:282 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_ipfjyl/test-data/data_file.txt [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_ipfjyl/test-data/data_file.txt [ Info: Skipping requires test (offline or error): Base.IOError("could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_ipfjyl/test-data/`: no such file or directory (ENOENT)", -2) [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_ipfjyl/test-data/data_file.txt [ Info: Skipping path template test: Base.IOError("could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_ipfjyl/test-data/`: no such file or directory (ENOENT)", -2) [ DataManifest Dataset already exists at: /tmp/DataManifest_test_ipfjyl/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv [ DataManifest Downloading dataset: https://download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv to /tmp/DataManifest_test_ipfjyl/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv Test Summary: | Pass Fail Error Total Time DataManifest.jl | 86 1 1 88 3m32.2s Registration | 4 4 0.3s DatasetEntry access | 5 5 0.7s Database string/repr | 2 2 0.2s Path | 3 3 0.4s File format inference | 6 6 0.5s TOML | 3 3 2.5s Command-based entry (templating) | 2 2 5.0s julia (inline Julia in isolated module) | 2 2 0.0s julia: uri, key, doi etc. in scope (same as shell template) | 4 4 0.5s julia: [_LOADERS].julia_modules applied to dataset julia code | 2 2 0.6s julia: [_LOADERS].julia_includes applied to loader context | 2 2 1.4s load_dataset | 1 1 3.4s Download (optional, may skip if offline) | 1 1 4.7s delete_dataset | 4 1 5 4.8s requires (dependency resolution) | 1 1 0.6s download_dataset overwrite | 1 1 0.2s DefaultLoaders | 41 41 2m55.8s validate_loaders | 3 3 1.6s RNG of the outermost testset: Random.Xoshiro(0x07ad71db927a5589, 0xf5572f6e5f1ab8ed, 0xb9f4f6b332c09a3e, 0x1a85ba3575f51c6d, 0x4323e91ce7414a81) ERROR: LoadError: Some tests did not pass: 86 passed, 1 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/runtests.jl:20 Testing failed after 235.87s ERROR: LoadError: Package DataManifest errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 347.8s: package tests unexpectedly errored