Package evaluation to test OnlinePCA on Julia 1.14.0-DEV.2043 (b936235316*) started at 2026-04-20T01:05:21.970 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.46s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed URIs ──────────────────────── v1.6.1 Installed CodecZstd ─────────────────── v0.8.7 Installed GLM ───────────────────────── v1.9.3 Installed DataStructures ────────────── v0.19.4 Installed MacroTools ────────────────── v0.5.16 Installed FilePathsBase ─────────────── v0.9.24 Installed libaec_jll ────────────────── v1.1.6+0 Installed s2n_tls_jll ───────────────── v1.7.2+0 Installed FillArrays ────────────────── v1.16.0 Installed Mux ───────────────────────── v1.0.2 Installed InlineStrings ─────────────── v1.4.5 Installed HypergeometricFunctions ───── v0.3.28 Installed StatsModels ───────────────── v0.7.9 Installed DelimitedFiles ────────────── v1.9.1 Installed aws_c_cal_jll ─────────────── v0.9.13+0 Installed aws_c_common_jll ──────────── v0.12.6+0 Installed AliasTables ───────────────── v1.1.3 Installed OnlinePCA ─────────────────── v0.3.10 Installed StatsBase ─────────────────── v0.34.10 Installed MPICH_jll ─────────────────── v5.0.1+0 Installed CSV ───────────────────────── v0.10.16 Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.1 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 (no artifacts on this platform) Installed ExceptionUnwrapping ───────── v0.1.11 Installed TranscodingStreams ────────── v0.11.3 Installed OrderedCollections ────────── v1.8.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed Observables ───────────────── v0.5.5 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed TensorCore ────────────────── v0.1.1 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed Kaleido_jll ───────────────── v0.2.1+0 Installed Compat ────────────────────── v4.18.1 Installed WebSockets ────────────────── v1.6.0 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed Colors ────────────────────── v0.13.1 Installed MPIABI_jll ────────────────── v0.1.4+0 Installed dlfcn_win32_jll ───────────── v1.4.2+0 (no artifacts on this platform) Installed FunctionalCollections ─────── v0.5.0 Installed MbedTLS ───────────────────── v1.1.10 Installed PrecompileTools ───────────── v1.3.3 Installed SentinelArrays ────────────── v1.4.9 Installed TextWrap ──────────────────── v1.0.2 Installed Hiccup ────────────────────── v0.2.2 Installed OpenSSL ───────────────────── v1.6.1 Installed ProgressMeter ─────────────── v1.11.0 Installed mpif_jll ──────────────────── v0.1.7+0 Installed LoggingExtras ─────────────── v1.2.0 Installed IrrationalConstants ───────── v0.2.6 Installed ColorVectorSpace ──────────── v0.11.0 Installed AssetRegistry ─────────────── v0.1.1 Installed Widgets ───────────────────── v0.6.7 Installed aws_c_s3_jll ──────────────── v0.11.5+0 Installed Requires ──────────────────── v1.3.1 Installed Pidfile ───────────────────── v1.3.0 Installed ColorTypes ────────────────── v0.12.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed QuadGK ────────────────────── v2.11.3 Installed StringManipulation ────────── v0.4.4 Installed LogExpFunctions ───────────── v0.3.29 Installed ArgParse ──────────────────── v1.2.0 Installed BitFlags ──────────────────── v0.1.9 Installed aws_c_io_jll ──────────────── v0.26.3+0 Installed HDF5_jll ──────────────────── v2.1.2+0 Installed HTTP ──────────────────────── v1.11.0 Installed OpenMPI_jll ───────────────── v5.0.11+0 Installed Hwloc_jll ─────────────────── v2.13.0+1 Installed Parsers ───────────────────── v2.8.3 Installed JSON ──────────────────────── v0.21.4 Installed Rmath ─────────────────────── v0.9.0 Installed Distributions ─────────────── v0.25.124 Installed PrettyTables ──────────────── v3.3.2 Installed Parameters ────────────────── v0.12.3 Installed aws_c_sdkutils_jll ────────── v0.2.4+1 Installed MatrixMarket ──────────────── v0.5.2 Installed StatsFuns ─────────────────── v1.5.2 Installed aws_checksums_jll ─────────── v0.2.10+0 Installed Tables ────────────────────── v1.12.1 Installed PlotlyKaleido ─────────────── v2.3.1 Installed WebIO ─────────────────────── v0.8.21 Installed Reexport ──────────────────── v1.2.2 Installed XML2_jll ──────────────────── v2.13.9+0 Installed PtrArrays ─────────────────── v1.4.0 Installed DataFrames ────────────────── v1.8.2 Installed SpecialFunctions ──────────── v2.7.2 Installed FixedPointNumbers ─────────── v0.8.5 Installed SimpleBufferStream ────────── v1.2.0 Installed Missings ──────────────────── v1.2.0 Installed PlotlyBase ────────────────── v0.8.23 Installed Blink ─────────────────────── v0.12.9 Installed Preferences ───────────────── v1.5.2 Installed PooledArrays ──────────────── v1.4.3 Installed WeakRefStrings ────────────── v1.4.2 Installed MPIPreferences ────────────── v0.1.12 Installed JSExpr ────────────────────── v0.5.4 Installed JLLWrappers ───────────────── v1.7.1 Installed aws_c_http_jll ────────────── v0.10.13+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Mustache ──────────────────── v1.0.21 Installed SortingAlgorithms ─────────── v1.2.2 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed PDMats ────────────────────── v0.11.37 Installed Crayons ───────────────────── v4.1.1 Installed aws_c_compression_jll ─────── v0.3.2+0 Installed MPItrampoline_jll ─────────── v5.5.6+0 Installed HDF5 ──────────────────────── v0.17.3 Installed Lazy ──────────────────────── v0.15.1 Installed UnPack ────────────────────── v1.0.2 Installed WorkerUtilities ───────────── v1.6.1 Installed aws_c_auth_jll ────────────── v0.9.6+0 Installed DocStringExtensions ───────── v0.9.5 Installed ColorSchemes ──────────────── v3.31.0 Installed PlotlyJS ──────────────────── v0.18.18 Installing 28 artifacts Installed artifact aws_c_common 285.2 KiB Installed artifact libaec 50.0 KiB Installed artifact aws_c_auth 130.3 KiB Installed artifact aws_c_cal 1.2 MiB Installed artifact MbedTLS 2.2 MiB Installed artifact aws_c_io 181.7 KiB Installed artifact aws_c_http 387.4 KiB Installed artifact XML2 2.5 MiB Installed artifact aws_checksums 87.0 KiB Installed artifact Hwloc 3.5 MiB Installed artifact s2n_tls 1.8 MiB Installed artifact aws_c_sdkutils 54.9 KiB Installed artifact plotly-base-artifacts 430.0 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact plotly 2.3 MiB Installed artifact aws_c_compression 13.4 KiB Installed artifact aws_c_s3 143.0 KiB Installed artifact HDF5 6.1 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact mathjax 18.7 KiB Installed artifact web 215.6 KiB Installed artifact plotly-artifacts 1.7 MiB Installed artifact Rmath 121.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact testfiles 6.2 MiB Installed artifact MPICH 8.8 MiB Installed artifact Kaleido 75.3 MiB Installed artifact electronjs_app 79.1 MiB Updating `~/.julia/environments/v1.14/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.16 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.124 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.3 [f67ccb44] + HDF5 v0.17.3 [cd3eb016] + HTTP v1.11.0 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.10 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.9 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.4+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.1+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4bf6c08295346efba58bb2d5f8c52984efed7f27/build.log` Installation completed after 85.69s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.2 s ✓ MacroTools 1.6 s ✓ InlineStrings 0.8 s ✓ Reexport 0.9 s ✓ TensorCore 2.0 s ✓ IrrationalConstants 0.8 s ✓ DataValueInterfaces 0.9 s ✓ StatsAPI 1.0 s ✓ Observables 1.3 s ✓ TranscodingStreams 0.9 s ✓ TextWrap 0.8 s ✓ LaTeXStrings 1.1 s ✓ Statistics 0.8 s ✓ PtrArrays 0.8 s ✓ SimpleBufferStream 0.9 s ✓ DataAPI 1.2 s ✓ URIs 0.8 s ✓ InvertedIndices 0.9 s ✓ BitFlags 0.9 s ✓ ShiftedArrays 1.0 s ✓ WorkerUtilities 2.2 s ✓ FillArrays 0.9 s ✓ UnPack 1.3 s ✓ OrderedCollections 1.1 s ✓ DocStringExtensions 0.8 s ✓ IteratorInterfaceExtensions 2.0 s ✓ Crayons 1.1 s ✓ DelimitedFiles 1.3 s ✓ Requires 1.5 s ✓ ConcurrentUtilities 2.4 s ✓ ProgressMeter 2.3 s ✓ SentinelArrays 1.5 s ✓ LoggingExtras 2.1 s ✓ PDMats 1.2 s ✓ Compat 1.5 s ✓ Preferences 1.1 s ✓ Pidfile 1.7 s ✓ ExceptionUnwrapping 1.3 s ✓ FunctionalCollections 6.2 s ✓ Lazy 1.4 s ✓ Hiccup 2.0 s ✓ CodecZstd 1.0 s ✓ CodecZlib 1.7 s ✓ ArgParse 1.8 s ✓ Statistics → SparseArraysExt 4.3 s ✓ FixedPointNumbers 1.0 s ✓ AliasTables 1.0 s ✓ Missings 1.0 s ✓ PooledArrays 4.0 s ✓ OpenSSL 1.3 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 0.9 s ✓ Parameters 3.5 s ✓ DataStructures 1.4 s ✓ LogExpFunctions 0.8 s ✓ TableTraits 1.7 s ✓ FillArrays → FillArraysPDMatsExt 0.9 s ✓ Compat → CompatLinearAlgebraExt 1.3 s ✓ PrecompileTools 1.6 s ✓ JLLWrappers 2.4 s ✓ MPIPreferences 1.5 s ✓ MatrixMarket 2.9 s ✓ ColorTypes 1.2 s ✓ SortingAlgorithms 2.5 s ✓ QuadGK 2.0 s ✓ Tables 2.3 s ✓ FilePathsBase 4.0 s ✓ StringManipulation 18.0 s ✓ Parsers 2.4 s ✓ Kaleido_jll 2.2 s ✓ Rmath_jll 1.5 s ✓ MicrosoftMPI_jll 2.5 s ✓ OpenSpecFun_jll 2.1 s ✓ aws_c_common_jll 1.4 s ✓ dlfcn_win32_jll 1.9 s ✓ libaec_jll 1.9 s ✓ Xorg_libpciaccess_jll 2.3 s ✓ Libiconv_jll 2.3 s ✓ MbedTLS_jll 2.3 s ✓ s2n_tls_jll 5.4 s ✓ MPItrampoline_jll 1.3 s ✓ ColorTypes → StyledStringsExt 8.5 s ✓ Colors 4.1 s ✓ ColorVectorSpace 4.7 s ✓ StatsBase 1.5 s ✓ Mustache 3.3 s ✓ FilePathsBase → FilePathsBaseTestExt 1.3 s ✓ FilePathsBase → FilePathsBaseMmapExt 44.9 s ✓ PrettyTables 4.5 s ✓ JSON 1.4 s ✓ InlineStrings → ParsersExt 2.3 s ✓ Rmath 5.2 s ✓ SpecialFunctions 2.5 s ✓ aws_c_cal_jll 2.6 s ✓ aws_c_sdkutils_jll 2.5 s ✓ aws_checksums_jll 2.4 s ✓ aws_c_compression_jll 2.0 s ✓ XML2_jll 2.5 s ✓ MbedTLS 2.3 s ✓ Widgets 10.7 s ✓ ColorSchemes 1.6 s ✓ PDMats → StatsBaseExt 83.8 s ✓ DataFrames 1.4 s ✓ AssetRegistry 1.6 s ✓ PlotlyKaleido 3.1 s ✓ WeakRefStrings 2.7 s ✓ HypergeometricFunctions 1.8 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.7 s ✓ aws_c_io_jll 2.9 s ✓ Hwloc_jll 27.3 s ✓ HTTP 12.3 s ✓ PlotlyBase 27.6 s ✓ CSV 3.2 s ✓ StatsFuns 2.5 s ✓ aws_c_http_jll 2.4 s ✓ MPICH_jll 4.4 s ✓ OpenMPI_jll 4.5 s ✓ MPIABI_jll WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 4.4 s ✓ WebSockets 7.4 s ✓ Mux 14.0 s ✓ PlotlyBase → DataFramesExt 5.6 s ✓ StatsModels 10.6 s ✓ Distributions 2.4 s ✓ aws_c_auth_jll 4.8 s ✓ mpif_jll 9.2 s ✓ WebIO 6.2 s ✓ GLM 4.3 s ✓ Distributions → DistributionsTestExt 8.8 s ✓ PlotlyBase → DistributionsExt 2.4 s ✓ aws_c_s3_jll 8.5 s ✓ JSExpr 2.7 s ✓ HDF5_jll 13.8 s ✓ Blink 12.6 s ✓ HDF5 19.8 s ✓ PlotlyJS 13.7 s ✓ PlotlyJS → CSVExt 22.3 s ✓ PlotlyJS → DataFramesExt 13.5 s ✓ OnlinePCA 137 dependencies successfully precompiled in 639 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Precompilation completed after 668.9s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_G0XmfT/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.124 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_G0XmfT/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.16 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.2 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.124 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.3 [f67ccb44] + HDF5 v0.17.3 [cd3eb016] + HTTP v1.11.0 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.4.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.3 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.7.2 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.10 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.2 [3eaba693] + StatsModels v0.7.9 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.4+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.2+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.14.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.19.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.2+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2026.3.19 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.30+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.68.1+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_G0XmfT/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.124 [1a297f60] FillArrays v1.16.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_G0XmfT/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.4 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.124 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.3 [f67ccb44] HDF5 v0.17.3 [cd3eb016] HTTP v1.11.0 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.10 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.18 [f2990250] PlotlyKaleido v2.3.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.9 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.13.0+1 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [b5ada748] MPIABI_jll v0.1.4+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.6+0 [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.1+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... /tmp/jl_MaN5Dt Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: binfile => /tmp/jl_MaN5Dt/Data.zst csvfile => /tmp/jl_MaN5Dt/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: mmfile => /tmp/jl_MaN5Dt/Data.mtx binfile => /tmp/jl_MaN5Dt/Data.mtx.zst ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: bincoofile => /tmp/jl_MaN5Dt/Data.bincoo binfile => /tmp/jl_MaN5Dt/Data.bincoo.zst ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_MaN5Dt/Data.zst outdir => /tmp/jl_wP2UkS pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_MaN5Dt/Data.mtx.zst outdir => /tmp/jl_0ZTNtW pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowvarlist => /tmp/jl_wP2UkS/Feature_Vars.csv binfile => /tmp/jl_MaN5Dt/Data.zst outdir => /tmp/jl_wP2UkS rowcv2list => /tmp/jl_wP2UkS/Feature_CV2s.csv rowmeanlist => /tmp/jl_wP2UkS/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_MaN5Dt/Data.zst samplelist => /tmp/jl_wP2UkS/Sample_NoCounts.csv outdir => /tmp/jl_wP2UkS thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_wP2UkS/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_MaN5Dt/Data.zst samplelist => outdir => /tmp/jl_wP2UkS thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_wP2UkS/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_MaN5Dt/Data.zst samplelist => /tmp/jl_wP2UkS/Sample_NoCounts.csv outdir => /tmp/jl_wP2UkS thr2 => 10 direct1 => + direct2 => + featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => "/tmp/jl_wP2UkS/Eigen_vectors.csv" scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => "/tmp/jl_wP2UkS/Loadings.csv" Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:45 Progress: 1%|▍ | ETA: 0:02:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:01:29 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### Oja (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:02 Progress: 1%|▌ | ETA: 0:03:36 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:33 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:34 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:03:05 Progress: 1%|▍ | ETA: 0:03:55 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:06 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:22 Progress: 1%|▍ | ETA: 0:05:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:47 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:36 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:27 Progress: 1%|▍ | ETA: 0:02:40 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing lower => 0 stepsize => "1.0e-15" dim => "3" rowvarlist => "" offsetStoch => 1.0f-15 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" upper => 1.0f38 numepoch => "1" initV => nothing Progress: 1%|▎ | ETA: 0:09:06 Progress: 1%|▍ | ETA: 0:07:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:12:36 Progress: 1%|▍ | ETA: 0:10:09 Progress: 34%|██████████████▏ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Progress: 1%|▎ | ETA: 0:03:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:24 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:12:35 Progress: 1%|▍ | ETA: 0:09:18 Progress: 34%|█████████████▊ | ETA: 0:00:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:23 Progress: 34%|█████████████▊ | ETA: 0:00:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:14:09 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:15:14 Progress: 34%|█████████████▊ | ETA: 0:00:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:05:57 Progress: 1%|▍ | ETA: 0:06:57 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Progress: 1%|▎ | ETA: 0:06:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:09:47 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:29 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:15:46 Progress: 1%|▍ | ETA: 0:12:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1688 running 1 of 1 signal (10): User defined signal 1 egal_types at /source/src/builtins.c:182 ijl_types_equal at /source/src/subtype.c:2406 jl_specializations_get_linfo_ at /source/src/gf.c:236 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4104 jl_restore_package_image_from_stream at /source/src/staticdata.c:4320 jl_restore_incremental_from_buf at /source/src/staticdata.c:4385 ijl_restore_package_image_from_file at /source/src/staticdata.c:4451 #_include_from_serialized#910 at ./loading.jl:1459 _include_from_serialized at ./loading.jl:1435 [inlined] #_require_search_from_serialized#927 at ./loading.jl:2264 _require_search_from_serialized at ./loading.jl:2172 [inlined] __require_prelocked at ./loading.jl:2805 _require_prelocked at ./loading.jl:2666 macro expansion at ./loading.jl:2593 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2557 jfptr___require_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:929 require at ./loading.jl:2533 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 [inlined] _eval_using at ./module.jl:137 jfptr__eval_using_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:768 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:782 ijl_toplevel_eval_in at /source/src/toplevel.c:827 eval at ./boot.jl:517 include_string at ./loading.jl:3107 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3167 include at ./Base.jl:326 exec_options at ./client.jl:352 _start at ./client.jl:593 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a869af08249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 778 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a86807fc010 Total snapshots: 7. Utilization: 100% ╎7 @Base/client.jl:593 _start() ╎ 7 @Base/client.jl:352 exec_options(opts::Base.JLOptions) ╎ 7 @Base/Base.jl:326 include(mod::Module, _path::String) ╎ 7 @Base/loading.jl:3167 _include(mapexpr::Function, mod::Module, _path::S… ╎ 7 @Base/loading.jl:3107 include_string(mapexpr::typeof(identity), mod::M… ╎ 7 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ 7 @Base/module.jl:137 _eval_using(to::Module, path::Expr) ╎ ╎ 7 @Base/module.jl:137 _eval_using ╎ ╎ 7 @Base/module.jl:60 eval_import_path_all(at::Module, path::Expr, ke… ╎ ╎ 7 @Base/module.jl:36 eval_import_path ╎ ╎ 7 @Base/loading.jl:2533 require ╎ ╎ ╎ 7 @Base/loading.jl:2557 __require(into::Module, mod::Symbol) ╎ ╎ ╎ 7 @Base/lock.jl:376 macro expansion ╎ ╎ ╎ 7 @Base/loading.jl:2593 macro expansion ╎ ╎ ╎ 7 @Base/loading.jl:2666 _require_prelocked(uuidkey::Base.PkgId… ╎ ╎ ╎ 7 @Base/loading.jl:2805 __require_prelocked(pkg::Base.PkgId, … ╎ ╎ ╎ ╎ 7 @Base/loading.jl:2172 _require_search_from_serialized ╎ ╎ ╎ ╎ 7 @Base/loading.jl:2264 _require_search_from_serialized(pkg… ╎ ╎ ╎ ╎ 7 @Base/loading.jl:1435 _include_from_serialized 6╎ ╎ ╎ ╎ 6 @Base/loading.jl:1459 _include_from_serialized(pkg::Bas… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1476 _include_from_serialized(pkg::Bas… ╎ ╎ ╎ ╎ 1 @Compiler/…fer.jl:657 insert_backedges_typeinf ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…fer.jl:77 insert_backedges(internal_method… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…er.jl:87 scan_new_code!(internal_methods:… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…er.jl:101 verify_method_graph(codeinst::… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:231 verify_method(codeinst::Core.C… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:574 verify_call(sig::Any, expecte… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nals.jl:1603 _methods_by_ftype ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Parsed args: scale => "ftt" logdir => "/tmp/jl_wP2UkS" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_MaN5Dt/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wP2UkS/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wP2UkS" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b5e60baf850 Total snapshots: 506. Utilization: 0% ╎506 @Base/task.jl:1168 wait_forever() 505╎ 506 @Base/task.jl:1246 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000778d816230d0 Total snapshots: 457. Utilization: 0% ╎457 @Base/task.jl:1168 wait_forever() 456╎ 457 @Base/task.jl:1246 wait() Progress: 1%|▎ | ETA: 0:23:33 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 [778] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_svrg.jl:74 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 57801511 (Pool: 57800641; Big: 870); GC: 38 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 34085418 (Pool: 34084393; Big: 1025); GC: 35 [1691] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/svrg:1 jl_is_type_type at /source/src/julia.h:1775 [inlined] subtype at /source/src/subtype.c:1574 exists_subtype at /source/src/subtype.c:1872 [inlined] forall_exists_subtype at /source/src/subtype.c:1901 ijl_subtype_env at /source/src/subtype.c:2362 subtype_tuple_tail at /source/src/subtype.c:1373 [inlined] subtype_tuple at /source/src/subtype.c:1455 [inlined] subtype at /source/src/subtype.c:1629 exists_subtype at /source/src/subtype.c:1872 [inlined] forall_exists_subtype at /source/src/subtype.c:1901 ijl_types_equal at /source/src/subtype.c:2472 [inlined] ijl_types_equal at /source/src/subtype.c:2402 _typename_add_backedge at /source/src/gf.c:2391 foreach_top_nth_typename at /source/src/gf.c:902 jl_foreach_top_typename_for at /source/src/gf.c:948 [inlined] ijl_method_table_add_backedge at /source/src/gf.c:2413 store_backedges at ./../usr/share/julia/Compiler/src/typeinfer.jl:807 verify_method at ./../usr/share/julia/Compiler/src/reinfer.jl:333 verify_method_graph at ./../usr/share/julia/Compiler/src/reinfer.jl:101 scan_new_code! at ./../usr/share/julia/Compiler/src/reinfer.jl:87 insert_backedges at ./../usr/share/julia/Compiler/src/reinfer.jl:77 jfptr_insert_backedges_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] ijl_call_in_typeinf_world at /source/src/gf.c:560 insert_backedges_typeinf at ./../usr/share/julia/Compiler/src/reinfer.jl:657 [inlined] #_include_from_serialized#910 at ./loading.jl:1476 _include_from_serialized at ./loading.jl:1435 [inlined] #_require_search_from_serialized#927 at ./loading.jl:2264 _require_search_from_serialized at ./loading.jl:2172 [inlined] __require_prelocked at ./loading.jl:2805 _require_prelocked at ./loading.jl:2666 macro expansion at ./loading.jl:2593 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2557 jfptr___require_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:929 require at ./loading.jl:2533 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 [inlined] _eval_using at ./module.jl:137 jfptr__eval_using_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:768 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:782 ijl_toplevel_eval_in at /source/src/toplevel.c:827 eval at ./boot.jl:517 include_string at ./loading.jl:3107 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3167 include at ./Base.jl:326 exec_options at ./client.jl:352 PkgEval terminated after 2771.91s: test duration exceeded the time limit