Package evaluation to test NQCDynamics on Julia 1.14.0-DEV.2058 (afc71c255e*) started at 2026-04-20T03:30:01.123 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.67s ################################################################################ # Installation # Installing NQCDynamics... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [36248dfb] + NQCDynamics v1.0.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [80f14c24] + AbstractMCMC v5.15.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.5.2 ⌅ [0bf59076] + AdvancedHMC v0.6.4 [5b7e9947] + AdvancedMH v0.8.10 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.24.0 [4c555306] + ArrayLayouts v1.12.2 [a963bdd2] + AtomsBase v0.5.2 [a3e0e189] + AtomsCalculators v0.2.3 [13072b0f] + AxisAlgorithms v1.1.0 [093aae92] + BSplineKit v0.19.2 [aae01518] + BandedMatrices v1.11.0 [198e06fe] + BangBang v0.4.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.12.1 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b0b7db55] + ComponentArrays v0.15.36 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [82cc6244] + DataInterpolations v8.10.0 [864edb3b] + DataStructures v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.6 ⌃ [2b5f629d] + DiffEqBase v6.213.0 [459566f4] + DiffEqCallbacks v4.14.0 [77a26b50] + DiffEqNoiseProcess v5.29.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.124 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.19 [d4d017d3] + ExponentialUtilities v1.30.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [352459e4] + ExtXYZ v0.2.2 ⌅ [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [29a986be] + FastLapackInterface v2.1.1 [a4df4552] + FastPower v1.3.1 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.8.0 [6a86dc24] + FiniteDiff v2.30.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 ⌅ [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [86223c79] + Graphs v1.14.0 [f67ccb44] + HDF5 v0.17.3 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [505f98c9] + InplaceOps v0.3.0 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 ⌃ [ccbc3e58] + JumpProcesses v9.23.1 [ba0b0d4f] + Krylov v0.10.6 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [2d8b4e74] + LevyArea v1.0.0 [87fe0de2] + LineSearch v0.1.7 ⌃ [d3d80556] + LineSearches v7.5.1 [7ed4a6bd] + LinearSolve v3.75.0 [6fdf6af0] + LogDensityProblems v2.2.0 [996a588d] + LogDensityProblemsAD v1.13.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [299715c1] + MarchingCubes v0.1.11 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌅ [d41bc354] + NLSolversBase v7.10.0 [78c76ebc] + NQCBase v1.1.0 [ddd1f41d] + NQCCalculators v1.1.0 [657014a1] + NQCDistributions v1.0.0 [36248dfb] + NQCDynamics v1.0.4 [c814dc9f] + NQCModels v1.0.4 [77ba4419] + NaNMath v1.1.3 ⌃ [8913a72c] + NonlinearSolve v4.12.0 ⌃ [be0214bd] + NonlinearSolveBase v2.11.2 ⌅ [5959db7a] + NonlinearSolveFirstOrder v1.11.1 ⌃ [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 ⌃ [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌅ [1dea7af3] + OrdinaryDiffEq v6.103.0 ⌃ [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 ⌃ [6ad6398a] + OrdinaryDiffEqBDF v1.10.1 ⌅ [bbf590c4] + OrdinaryDiffEqCore v1.36.0 ⌃ [50262376] + OrdinaryDiffEqDefault v1.8.0 ⌅ [4302a76b] + OrdinaryDiffEqDifferentiation v1.16.1 ⌃ [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 ⌃ [e0540318] + OrdinaryDiffEqExponentialRK v1.8.0 ⌃ [becaefa8] + OrdinaryDiffEqExtrapolation v1.9.0 ⌃ [5960d6e9] + OrdinaryDiffEqFIRK v1.16.0 ⌃ [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 ⌃ [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 ⌃ [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 ⌃ [9f002381] + OrdinaryDiffEqIMEXMultistep v1.7.0 ⌃ [521117fe] + OrdinaryDiffEqLinear v1.6.0 ⌃ [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 ⌃ [b0944070] + OrdinaryDiffEqLowStorageRK v1.7.0 ⌃ [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.15.0 ⌃ [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 ⌃ [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.6.0 ⌃ [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 ⌃ [04162be5] + OrdinaryDiffEqQPRK v1.4.0 ⌃ [af6ede74] + OrdinaryDiffEqRKN v1.5.0 ⌃ [43230ef6] + OrdinaryDiffEqRosenbrock v1.18.1 ⌃ [2d112036] + OrdinaryDiffEqSDIRK v1.7.0 ⌃ [669c94d9] + OrdinaryDiffEqSSPRK v1.7.0 ⌃ [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.6.0 ⌃ [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 ⌃ [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 ⌃ [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 ⌃ [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [7b2266bf] + PeriodicTable v1.2.1 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [94ee1d12] + Quaternions v0.7.7 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v3.50.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.2.0 [81cd853e] + RingPolymerArrays v1.0.0 [79098fc4] + Rmath v0.9.0 ⌅ [f2b01f46] + Roots v2.3.0 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.18 [94e857df] + SIMDTypes v0.1.0 ⌅ [0bca4576] + SciMLBase v2.153.1 [19f34311] + SciMLJacobianOperators v0.1.13 [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.16.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 ⌃ [727e6d20] + SimpleNonlinearSolve v2.11.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.27 [276daf66] + SpecialFunctions v2.7.2 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.9.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [789caeaf] + StochasticDiffEq v6.87.0 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.4 [09ab397b] + StructArrays v0.7.3 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [5d786b92] + TerminalLoggers v0.1.7 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [b8865327] + UnicodePlots v3.8.2 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [efce3f68] + WoodburyMatrices v1.1.0 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [b5ada748] + MPIABI_jll v0.1.4+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [6ecdc6fc] + extxyz_jll v0.1.3+0 [477f73a3] + libaec_jll v1.1.6+0 [cdc7adba] + libcleri_jll v0.12.1+3 [9aeb927a] + mpif_jll v0.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [cddc5d3d] + s2n_tls_jll v1.7.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.1+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 22.6 s ✓ PythonCall 12.7 s ✓ DiffEqDevTools 11.5 s ✓ NonlinearSolve → NonlinearSolveNLsolveExt 17.8 s ✓ RootedTrees → PlotsExt WARNING: Constructor for type "ArrayPartition" was extended in `SurfaceHoppingMethods` without explicit qualification or import.  NOTE: Assumed "ArrayPartition" refers to `RecursiveArrayTools.ArrayPartition`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function ArrayPartition end`.  Hint: To silence the warning, qualify `ArrayPartition` as `RecursiveArrayTools.ArrayPartition` in the method signature or explicitly `import RecursiveArrayTools: ArrayPartition`. 71.7 s ✓ NQCDynamics ERROR: LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace:  [1] getproperty(x::Module, f::Symbol)  @ Base ./Base_compiler.jl:51  [2] _resolve_top_env(load_path::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:10  [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:823  [4] resolve()  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:796  [5] envdir()  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/env.jl:70  [6] init_context()  @ PythonCall.C ~/.julia/packages/PythonCall/avYrV/src/C/context.jl:63  [7] __init__()  @ PythonCall.C ~/.julia/packages/PythonCall/avYrV/src/C/C.jl:23  [8] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1605  [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1593  [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1481  [11] _include_from_serialized  @ ./loading.jl:1438 [inlined]  [12] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2280  [13] !=(x::Int8, y::Int64)  @ Base ./loading.jl:2175 [inlined]  [14] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2808  [15] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2669  [16] macro expansion  @ ./loading.jl:2596 [inlined]  [17] String(s::Symbol)  @ Base ./lock.jl:376 [inlined]  [18] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2560  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2536 [inlined]  [20] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [21] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [22] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [23] top-level scope  @ ~/.julia/packages/SciMLBase/O1HPI/ext/SciMLBasePythonCallExt.jl:3  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3268  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3110  [29] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, Type{Symbol}, Tuple{Vector{SubString{String}}}})  @ Base.Broadcast ./loading.jl:3120 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:350  [31] _start()  @ Base ./client.jl:593 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/SciMLBase/O1HPI/ext/SciMLBasePythonCallExt.jl:1 in expression starting at stdin:5 ✗ SciMLBase → SciMLBasePythonCallExt ERROR: LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace:  [1] getproperty(x::Module, f::Symbol)  @ Base ./Base_compiler.jl:51  [2] _resolve_top_env(load_path::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:10  [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:823  [4] resolve()  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:796  [5] envdir()  @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/env.jl:70  [6] init_context()  @ PythonCall.C ~/.julia/packages/PythonCall/avYrV/src/C/context.jl:63  [7] __init__()  @ PythonCall.C ~/.julia/packages/PythonCall/avYrV/src/C/C.jl:23  [8] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1605  [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1593  [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1481  [11] _include_from_serialized  @ ./loading.jl:1438 [inlined]  [12] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2280  [13] !=(x::Int8, y::Int64)  @ Base ./loading.jl:2175 [inlined]  [14] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2808  [15] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2669  [16] macro expansion  @ ./loading.jl:2596 [inlined]  [17] String(s::Symbol)  @ Base ./lock.jl:376 [inlined]  [18] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2560  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2536 [inlined]  [20] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [21] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [22] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [23] top-level scope  @ ~/.julia/packages/NQCDInterfASE/DDg3a/src/NQCDInterfASE.jl:3  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3268  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3110  [29] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, Type{Symbol}, Tuple{Vector{SubString{String}}}})  @ Base.Broadcast ./loading.jl:3120 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:350  [31] _start()  @ Base ./client.jl:593 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/NQCDInterfASE/DDg3a/src/NQCDInterfASE.jl:1 in expression starting at stdin:5 ✗ NQCDInterfASE 5 dependencies successfully precompiled in 169 seconds. 574 already precompiled. 1 dependency had output during precompilation: ┌ NQCDynamics │ WARNING: Constructor for type "ArrayPartition" was extended in `SurfaceHoppingMethods` without explicit qualification or import. │ NOTE: Assumed "ArrayPartition" refers to `RecursiveArrayTools.ArrayPartition`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function ArrayPartition end`. │ Hint: To silence the warning, qualify `ArrayPartition` as `RecursiveArrayTools.ArrayPartition` in the method signature or explicitly `import RecursiveArrayTools: ArrayPartition`. └ Precompilation completed after 198.0s ################################################################################ # Testing # Testing NQCDynamics Updating git-repo `https://github.com/NQCD/NQCDInterfASE.jl.git` Status `/tmp/jl_4FOdAa/Project.toml` ⌅ [0bf59076] AdvancedHMC v0.6.4 [5b7e9947] AdvancedMH v0.8.10 [336ed68f] CSV v0.10.16 [b0b7db55] ComponentArrays v0.15.36 [a93c6f00] DataFrames v1.8.2 [85a47980] Dictionaries v0.4.6 ⌃ [2b5f629d] DiffEqBase v6.213.0 [f3b72e0c] DiffEqDevTools v2.53.0 [77a26b50] DiffEqNoiseProcess v5.29.0 [31c24e10] Distributions v0.25.124 ⌅ [7034ab61] FastBroadcast v0.3.5 [29a986be] FastLapackInterface v2.1.1 [6a86dc24] FiniteDiff v2.30.0 [f67ccb44] HDF5 v0.17.3 [a98d9a8b] Interpolations v0.16.2 [033835bb] JLD2 v0.6.4 ⌅ [682c06a0] JSON v0.21.4 [33e6dc65] MKL v0.9.1 [46d2c3a1] MuladdMacro v0.2.4 [78c76ebc] NQCBase v1.1.0 `https://github.com/NQCD/NQCBase.jl.git#main` [ddd1f41d] NQCCalculators v1.1.0 `https://github.com/NQCD/NQCCalculators.jl.git#main` [4606675f] NQCDInterfASE v1.0.3 `https://github.com/NQCD/NQCDInterfASE.jl.git#main` [657014a1] NQCDistributions v1.0.0 `https://github.com/NQCD/NQCDistributions.jl.git#main` [36248dfb] NQCDynamics v1.0.4 `~/.julia/packages/NQCDynamics/xMvD6/` [c814dc9f] NQCModels v1.0.4 `https://github.com/NQCD/NQCModels.jl.git#main` ⌅ [429524aa] Optim v1.13.3 ⌅ [1dea7af3] OrdinaryDiffEq v6.103.0 ⌅ [bbf590c4] OrdinaryDiffEqCore v1.36.0 [d96e819e] Parameters v0.12.3 [7b2266bf] PeriodicTable v1.2.1 [91a5bcdd] Plots v1.41.6 [92933f4c] ProgressMeter v1.11.0 ⌅ [6099a3de] PythonCall v0.9.26 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v3.50.0 [189a3867] Reexport v1.2.2 [81cd853e] RingPolymerArrays v1.0.0 `https://github.com/NQCD/RingPolymerArrays.jl.git#main` ⌅ [f2b01f46] Roots v2.3.0 [6038ab10] Rotations v1.7.1 [1bc83da4] SafeTestsets v0.1.0 ⌅ [0bca4576] SciMLBase v2.153.1 [c0aeaf25] SciMLOperators v1.16.0 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 ⌅ [789caeaf] StochasticDiffEq v6.87.0 [09ab397b] StructArrays v0.7.3 [a759f4b9] TimerOutputs v0.5.29 [3a884ed6] UnPack v1.0.2 [b8865327] UnicodePlots v3.8.2 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [856f044c] MKL_jll v2025.2.0+0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_4FOdAa/Manifest.toml` [47edcb42] ADTypes v1.21.0 [80f14c24] AbstractMCMC v5.15.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt 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v0.9.1 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [299715c1] MarchingCubes v0.1.11 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.10 [442fdcdd] Measures v0.3.3 [0b3b1443] MicroMamba v0.1.15 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 ⌅ [d41bc354] NLSolversBase v7.10.0 [2774e3e8] NLsolve v4.5.1 [78c76ebc] NQCBase v1.1.0 `https://github.com/NQCD/NQCBase.jl.git#main` [ddd1f41d] NQCCalculators v1.1.0 `https://github.com/NQCD/NQCCalculators.jl.git#main` [4606675f] NQCDInterfASE v1.0.3 `https://github.com/NQCD/NQCDInterfASE.jl.git#main` [657014a1] NQCDistributions v1.0.0 `https://github.com/NQCD/NQCDistributions.jl.git#main` [36248dfb] NQCDynamics v1.0.4 `~/.julia/packages/NQCDynamics/xMvD6/` [c814dc9f] NQCModels v1.0.4 `https://github.com/NQCD/NQCModels.jl.git#main` [77ba4419] NaNMath v1.1.3 ⌃ [8913a72c] NonlinearSolve v4.12.0 ⌃ [be0214bd] NonlinearSolveBase v2.11.2 ⌅ [5959db7a] 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have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time FastDeterminant Tests | 4 4 9.8s Simulation Tests: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:51 [2] _resolve_top_env(load_path::Any) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:10 [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:823 [4] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:796 [5] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/env.jl:70 [6] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/avYrV/src/C/context.jl:63 [7] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/avYrV/src/C/C.jl:23 [8] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1605 [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1593 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1481 [11] _include_from_serialized @ ./loading.jl:1438 [inlined] [12] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2280 [13] !=(x::Int8, y::Int64) @ Base ./loading.jl:2175 [inlined] [14] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2808 [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2669 [16] macro expansion @ ./loading.jl:2596 [inlined] [17] String(s::Symbol) @ Base ./lock.jl:376 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2560 [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2536 [inlined] [20] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base ./module.jl:36 [inlined] [21] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [22] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base ./module.jl:137 [inlined] [23] top-level scope @ ~/.julia/packages/NQCDynamics/xMvD6/test/Core/simulations.jl:5 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [25] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:13 [26] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [27] macro expansion @ ~/.julia/packages/NQCDynamics/xMvD6/test/runtests.jl:13 [inlined] [28] eval(m::Module, e::Any) @ Core ./boot.jl:517 [29] top-level scope @ ~/.julia/packages/NQCDynamics/xMvD6/test/runtests.jl:12 [30] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] [31] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [32] top-level scope @ none:6 [33] eval(m::Module, e::Any) @ Core ./boot.jl:517 [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [35] _start() @ Base ./client.jl:593 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/NQCDynamics/xMvD6/test/Core/simulations.jl:5 Test Summary: | Error Total Time Simulation Tests | 1 1 24.9s RNG of the outermost testset: Random.Xoshiro(0xb62e4ad9ba797c1d, 0x11fba5124eef860d, 0xf5c8386accf905bc, 0x77f3bed82d51de26, 0x00b48c0fe5623dfa) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NQCDynamics/xMvD6/test/runtests.jl:8 Testing failed after 116.87s ERROR: LoadError: Package NQCDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 386.39s: package tests unexpectedly errored