Package evaluation to test GrowthParameterEstimation on Julia 1.14.0-DEV.2058 (afc71c255e*) started at 2026-04-20T04:16:36.926 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 12.31s ################################################################################ # Installation # Installing GrowthParameterEstimation... Resolving package versions... Installed GrowthParameterEstimation ─ v0.3.0 Updating `~/.julia/environments/v1.14/Project.toml` [f2d48b76] + GrowthParameterEstimation v0.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.5.2 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.24.0 [4c555306] + ArrayLayouts v1.12.2 [aae01518] + BandedMatrices v1.11.0 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [a134a8b2] + BlackBoxOptim v0.6.4 ⌃ [764a87c0] + BoundaryValueDiffEq v5.18.0 ⌃ [7227322d] + BoundaryValueDiffEqAscher v1.8.0 ⌅ [56b672f2] + BoundaryValueDiffEqCore v1.11.1 ⌃ [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 ⌃ [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 ⌃ [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 ⌃ [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 ⌃ [70df07ce] + 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[8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.1+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.47s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 23.8 s ✓ SciMLBase 4.0 s ✓ SciMLBase → SciMLBaseChainRulesCoreExt 4.6 s ✓ SciMLBase → SciMLBaseForwardDiffExt 5.5 s ✓ SciMLBase → SciMLBaseDistributionsExt 4.6 s ✓ OptimizationBase 9.4 s ✓ SciMLJacobianOperators 21.2 s ✓ LinearSolve 4.8 s ✓ OptimizationBase → OptimizationFiniteDiffExt 4.9 s ✓ OptimizationBase → OptimizationForwardDiffExt 8.6 s ✓ Optimization 12.4 s ✓ LineSearch 16.3 s ✓ NonlinearSolveBase 8.6 s ✓ LinearSolve → LinearSolveBandedMatricesExt 7.4 s ✓ LinearSolve → LinearSolveEnzymeExt 11.6 s ✓ LinearSolve → LinearSolveSparseArraysExt 10.5 s ✓ LinearSolve → LinearSolveForwardDiffExt 10.1 s ✓ LinearSolve → LinearSolveFastAlmostBandedMatricesExt 9.7 s ✓ OptimizationBBO 10.3 s ✓ OptimizationOptimJL 4.7 s ✓ LineSearch → LineSearchLineSearchesExt 5.4 s ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 5.0 s ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 4.4 s ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 8.4 s ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4.1 s ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 5.3 s ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 7.5 s ✓ NonlinearSolveBase → NonlinearSolveBaseBandedMatricesExt 9.9 s ✓ BracketingNonlinearSolve 30.4 s ✓ NonlinearSolveQuasiNewton 18.5 s ✓ NonlinearSolveSpectralMethods 47.7 s ✓ NonlinearSolveFirstOrder 5.3 s ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 8.6 s ✓ DiffEqBase 8.9 s ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 5.2 s ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 4.7 s ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 19.8 s ✓ SimpleNonlinearSolve 5.3 s ✓ DiffEqBase → DiffEqBaseSparseArraysExt 5.5 s ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5.5 s ✓ DiffEqBase → DiffEqBaseForwardDiffExt 11.2 s ✓ OrdinaryDiffEqCore 14.0 s ✓ DiffEqCallbacks 5.2 s ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 9.5 s ✓ DiffEqNoiseProcess 7.1 s ✓ DiffEqParamEstim 24.8 s ✓ Sundials 16.3 s ✓ BoundaryValueDiffEqCore 5.7 s ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 9.4 s ✓ SteadyStateDiffEq 8.9 s ✓ JumpProcesses 34.7 s ✓ NonlinearSolve 7.7 s ✓ DiffEqNoiseProcess → DiffEqNoiseProcessOptimExt 17.5 s ✓ BoundaryValueDiffEqAscher 261.4 s ✓ BoundaryValueDiffEqFIRK 150.1 s ✓ BoundaryValueDiffEqMIRK 23.1 s ✓ BoundaryValueDiffEqShooting 21.7 s ✓ BoundaryValueDiffEqMIRKN 9.3 s ✓ OrdinaryDiffEqStabilizedRK 7.3 s ✓ OrdinaryDiffEqFunctionMap 66.6 s ✓ OrdinaryDiffEqVerner 8.0 s ✓ OrdinaryDiffEqQPRK 8.3 s ✓ OrdinaryDiffEqSymplecticRK 11.1 s ✓ OrdinaryDiffEqLowOrderRK 8.6 s ✓ OrdinaryDiffEqFeagin 10.7 s ✓ OrdinaryDiffEqSSPRK 9.2 s ✓ OrdinaryDiffEqRKN 9.1 s ✓ OrdinaryDiffEqHighOrderRK 6.4 s ✓ OrdinaryDiffEqExplicitRK 13.9 s ✓ OrdinaryDiffEqTsit5 12.1 s ✓ OrdinaryDiffEqLinear 8.7 s ✓ OrdinaryDiffEqPRK 11.2 s ✓ OrdinaryDiffEqLowStorageRK 12.2 s ✓ OrdinaryDiffEqDifferentiation 15.1 s ✓ NonlinearSolve → NonlinearSolveSundialsExt 55.5 s ✓ BoundaryValueDiffEq 9.0 s ✓ OrdinaryDiffEqAdamsBashforthMoulton 7.7 s ✓ OrdinaryDiffEqNordsieck 11.1 s ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 16.0 s ✓ OrdinaryDiffEqExtrapolation 47.3 s ✓ OrdinaryDiffEqRosenbrock 18.0 s ✓ OrdinaryDiffEqExponentialRK 17.5 s ✓ OrdinaryDiffEqNonlinearSolve 45.3 s ✓ OrdinaryDiffEqFIRK 10.8 s ✓ OrdinaryDiffEqIMEXMultistep 10.3 s ✓ OrdinaryDiffEqStabilizedIRK 11.2 s ✓ OrdinaryDiffEqPDIRK 11.9 s ✓ OrdinaryDiffEqSDIRK 14.8 s ✓ StochasticDiffEq 22.6 s ✓ OrdinaryDiffEqBDF 48.1 s ✓ OrdinaryDiffEqDefault 17.3 s ✓ OrdinaryDiffEq 17.9 s ✓ DelayDiffEq 60.1 s ✓ DifferentialEquations 89.9 s ✓ GrowthParameterEstimation 94 dependencies successfully precompiled in 1814 seconds. 393 already precompiled. Precompilation completed after 1817.47s ################################################################################ # Testing # Testing GrowthParameterEstimation Status `/tmp/jl_yisomf/Project.toml` [a134a8b2] BlackBoxOptim v0.6.4 [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 [1130ab10] DiffEqParamEstim v2.3.0 [0c46a032] DifferentialEquations v7.17.0 [31c24e10] Distributions v0.25.124 ⌅ [f6369f11] ForwardDiff v0.10.39 [f2d48b76] GrowthParameterEstimation v0.3.0 ⌅ [2fda8390] LsqFit v0.13.0 ⌅ [7f7a1694] Optimization v3.26.3 ⌅ [3e6eede4] OptimizationBBO v0.1.5 ⌅ [36348300] OptimizationOptimJL v0.1.14 ⌃ [1dea7af3] OrdinaryDiffEq v6.105.0 [91a5bcdd] Plots v1.41.6 ⌅ [731186ca] RecursiveArrayTools v3.50.0 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [ade2ca70] Dates v1.11.0 [9a3f8284] Random v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_yisomf/Manifest.toml` [47edcb42] ADTypes v1.21.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.5.2 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.24.0 [4c555306] ArrayLayouts v1.12.2 [aae01518] BandedMatrices v1.11.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [a134a8b2] BlackBoxOptim v0.6.4 ⌃ [764a87c0] BoundaryValueDiffEq v5.18.0 ⌃ [7227322d] BoundaryValueDiffEqAscher v1.8.0 ⌅ [56b672f2] BoundaryValueDiffEqCore v1.11.1 ⌃ [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 ⌃ [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 ⌃ [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 ⌃ [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 ⌃ [70df07ce] BracketingNonlinearSolve v1.12.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [49dc2e85] Calculus v0.5.2 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.1 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌃ [bcd4f6db] DelayDiffEq v5.64.0 [8bb1440f] DelimitedFiles v1.9.1 [39dd38d3] Dierckx v0.5.4 ⌃ [2b5f629d] DiffEqBase v6.202.0 [459566f4] DiffEqCallbacks v4.14.0 [77a26b50] DiffEqNoiseProcess v5.29.0 [1130ab10] DiffEqParamEstim v2.3.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.17.0 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.124 [ffbed154] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = getindex(VA::ODESolution{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}, 2, Vector{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}}, Nothing, Nothing, Vector{Float64}, Vector{Vector{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}}}, Nothing, ODEProblem{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, Tuple{Float64, Float64}, true, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, 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typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(logistic_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 2}}, typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, Nothing}, SciMLBase.DEStats, Nothing, Nothing, Nothing, Nothing}, i::Int64) at deprecated.jl:215 └ @ RecursiveArrayTools ./deprecated.jl:215 ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = getindex(VA::ODESolution{Float64, 2, Vector{Vector{Float64}}, Nothing, Nothing, Vector{Float64}, Vector{Vector{Vector{Float64}}}, Nothing, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, Vector{Float64}, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, Vector{Float64}, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, OrdinaryDiffEqCore.InterpolationData{ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, Vector{Float64}, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, Vector{Float64}, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Vector{Vector{Float64}}, Vector{Float64}, Vector{Vector{Vector{Float64}}}, Nothing, OrdinaryDiffEqTsit5.Tsit5Cache{Vector{Float64}, Vector{Float64}, Vector{Float64}, typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, Nothing}, SciMLBase.DEStats, Nothing, Nothing, Nothing, Nothing}, i::Int64) at deprecated.jl:215 └ @ RecursiveArrayTools ./deprecated.jl:215 fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = getindex(VA::ODESolution{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}, 2, Vector{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}}, Nothing, Nothing, Vector{Float64}, Vector{Vector{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}}}, Nothing, ODEProblem{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, Tuple{Float64, Float64}, true, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, 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Vector{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(gompertz_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, SciMLBase.NullParameters}}, Float64}, Float64, 3}}, typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, Nothing}, SciMLBase.DEStats, Nothing, Nothing, Nothing, Nothing}, i::Int64) at deprecated.jl:215 └ @ RecursiveArrayTools ./deprecated.jl:215 === Logistic === Params: [0.5103452083409434, 6.045845040180519], BIC: -45.54906314571749, SSR: 0.005993539139205926 === Gompertz === Params: [0.23002061626847184, 2.5499999980697132, 8.438488879152514], BIC: -34.656566824985546, SSR: 0.021515332440289865 Results saved to /tmp/gpe_compare_models_test.csv === A === Params: [0.5103452083409434, 6.045845040180519], BIC: -45.54906314571749, SSR: 0.005993539139205926 === B === Params: [0.5103452076984476, 5.7435527926044045], BIC: -46.26716926712935, SSR: 0.00540916907314405 Results saved to /tmp/gpe_compare_datasets_test.csv ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = getindex(VA::ODESolution{ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#73#74"{OptimizationFunction{true, AutoForwardDiff{nothing, Nothing}, DiffEqParamEstim.var"#37#38"{Nothing, typeof(DiffEqParamEstim.STANDARD_PROB_GENERATOR), Base.Pairs{Symbol, Integer, Nothing, @NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(exponential_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, 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@NamedTuple{maxiters::Int64, verbose::Bool}}, ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, ODEFunction{true, SciMLBase.AutoSpecialize, typeof(exponential_growth!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, Nothing, Nothing}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, DiffEqParamEstim.L2Loss{Vector{Float64}, Matrix{Float64}, Nothing, Nothing, Nothing}, Nothing, Tuple{}}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, OptimizationBase.ReInitCache{Vector{Float64}, 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Moving elements to the interior. │ Element indices affected: [2] └ @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:446 ┌ Warning: Initial position cannot be on the boundary of the box. Moving elements to the interior. │ Element indices affected: [2] └ @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:446 Performing leave-one-out cross-validation... Performing 3-fold cross-validation... Performing parameter sensitivity analysis... Base parameters: [0.537, 6.3874] Perturbation: ±10.0% Parameter 1: SI = 0.854, Max rel change = 8.54% Parameter 2: SI = 0.926, Max rel change = 9.26% === Parameter Sensitivity Ranking === 1. Parameter 2 (value=6.3874): SI=0.926 2. Parameter 1 (value=0.537): SI=0.854 === Residual Analysis Summary === RMSE: 0.0658 MAE: 0.051 Mean residual: 0.0178 Std residual: 0.0672 Max |residual|: 0.1514 Outliers (|std_resid| > 2.0): 1 Normality correlation: 0.974 Normality concern: No Durbin-Watson statistic: 1.038 Autocorrelation concern: Yes Outlier details: Point 3: x=2.0, y=2.4, residual=0.151, std_resid=2.253 === Enhanced BIC Analysis === Comparing 1 models... Fitting Logistic... Success: BIC=-44.58, R²=0.9985, RMSE=0.0658 === Model Comparison Results === Model Rankings by BIC (lower is better): 1. Logistic: BIC=-44.58, Weight=1.0, R²=0.9985 === Model Selection Recommendations === Best model by BIC: Logistic Recommendation: Clear best model: Logistic Joint comparison summary saved to /tmp/joint_compare_smoke.csv Test Summary: | Pass Total Time GrowthParameterEstimation | 87 87 6m07.6s Testing GrowthParameterEstimation tests passed Testing completed after 454.49s PkgEval succeeded after 2325.06s