Package evaluation to test DiscoveryGraph on Julia 1.14.0-DEV.2058 (afc71c255e*) started at 2026-04-19T22:29:15.227


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 14.48s


################################################################################
# Installation
#

Installing DiscoveryGraph...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [6c26c9e7] + DiscoveryGraph v0.3.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [ec485272] + ArnoldiMethod v0.4.0
  [69666777] + Arrow v2.8.1
  [31f734f8] + ArrowTypes v2.3.0
  [c3b6d118] + BitIntegers v0.3.7
  [6309b1aa] + CodecInflate64 v0.1.3
  [5ba52731] + CodecLz4 v0.4.6
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.7
  [34da2185] + Compat v4.18.1
  [f0e56b4a] + ConcurrentUtilities v2.5.1
  [992eb4ea] + CondaPkg v0.2.34
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.2
  [864edb3b] + DataStructures v0.19.4
  [e2d170a0] + DataValueInterfaces v1.0.0
  [6c26c9e7] + DiscoveryGraph v0.3.0
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.7
  [e2ba6199] + ExprTools v0.1.10
  [8f5d6c58] + EzXML v1.2.3
  [86223c79] + Graphs v1.14.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [0c81fc1b] + InputBuffers v1.1.1
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.5.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [0b3b1443] + MicroMamba v0.1.15
  [e1d29d7a] + Missings v1.2.0
  [78c3b35d] + Mocking v0.8.1
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [fa939f87] + Pidfile v1.3.0
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.2
  [08abe8d2] + PrettyTables v3.3.2
  [43287f4e] + PtrArrays v1.4.0
  [6099a3de] + PythonCall v0.9.31
  [189a3867] + Reexport v1.2.2
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.9
  [699a6c99] + SimpleTraits v0.9.5
  [47aef6b3] + SimpleWeightedGraphs v1.5.1
  [a2af1166] + SortingAlgorithms v1.2.2
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.10
  [892a3eda] + StringManipulation v0.4.4
  [354b36f9] + StringViews v1.3.7
  [ec057cc2] + StructUtils v2.7.2
  [dc5dba14] + TZJData v1.5.0+2025b
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [f269a46b] + TimeZones v1.22.2
  [3bb67fe8] + TranscodingStreams v0.11.3
  [e17b2a0c] + UnsafePointers v1.0.0
⌅ [fdbf4ff8] + XLSX v0.10.4
  [49080126] + ZipArchives v2.6.0
  [a5390f91] + ZipFile v0.10.1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [02c8fc9c] + XML2_jll v2.15.1+0
  [f8abcde7] + micromamba_jll v2.3.1+0
  [4d7b5844] + pixi_jll v0.41.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.19.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2026.3.19
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [458c3c95] + OpenSSL_jll v3.5.6+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.2+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.1+0
  [3f19e933] + p7zip_jll v17.8.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 6.19s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78
┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    expected package `Test [8dfed614]` to be registered
│    Stacktrace:
│      [1] pkgerror(msg::String)
│        @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
│      [2] check_registered(registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec})
│        @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2137
│      [3] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing)
│        @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2536
│      [4] iterate(A::Vector{PackageSpec}, state::Int64)
│        @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2511 [inlined]
│      [5] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull})
│        @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:479
│      [6] up
│        @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:446 [inlined]
│      [7] ht_keyindex(h::Dict{UUID, Pkg.Types.PackageEntry}, key::UUID)
│        @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:177 [inlined]
│      [8] get(h::Dict{UUID, Pkg.Types.PackageEntry}, key::UUID, default::Nothing)
│        @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:485 [inlined]
│      [9] get(m::Pkg.Types.Manifest, key::UUID, default::Nothing)
│        @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:484 [inlined]
│     [10] activate(pkg::String; allow_reresolve::Bool)
│        @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:83
│     [11] activate(pkg::String)
│        @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:9
│     [12] (::var"#10#11")()
│        @ Main /PkgEval.jl/scripts/precompile.jl:21
│     [13] Base.ScopedValues.Scope(scope::Nothing, pair::Pair{Base.ScopedValues.ScopedValue{IO}, Base.DevNull})
│        @ Base.ScopedValues /PkgEval.jl/scripts/common.jl:52 [inlined]
│     [14] with(::var"#3#4"{var"#10#11"}, ::Pair{Base.ScopedValues.ScopedValue{IO}, Base.DevNull})
│        @ Base.ScopedValues ./scopedvalues.jl:324
│     [15] capture_pkg_output(f::var"#10#11"; suppress::Bool)
│        @ Main /PkgEval.jl/scripts/common.jl:51
│     [16] suppress_pkg_output(f::Function)
│        @ Main /PkgEval.jl/scripts/common.jl:35
│     [17] top-level scope
│        @ /PkgEval.jl/scripts/precompile.jl:19
│     [18] include(mod::Module, _path::String)
│        @ Base ./Base.jl:326
│     [19] exec_options(opts::Base.JLOptions)
│        @ Base ./client.jl:352
│     [20] _start()
│        @ Base ./client.jl:593
└ @ Main /PkgEval.jl/scripts/precompile.jl:24
  Activating project at `~/.julia/environments/v1.14`
Precompiling package dependencies...
Precompiling project...
ERROR: LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:51
  [2] _resolve_top_env(load_path::Any)
    @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:10
  [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)
    @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:823
  [4] resolve()
    @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:796
  [5] envdir()
    @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/env.jl:70
  [6] init_context()
    @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/context.jl:135
  [7] __init__()
    @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/C.jl:26
  [8] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1605
  [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1593
 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)
    @ Base ./loading.jl:1481
 [11] _include_from_serialized
    @ ./loading.jl:1438 [inlined]
 [12] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
    @ Base ./loading.jl:2280
 [13] !=(x::Int8, y::Int64)
    @ Base ./loading.jl:2175 [inlined]
 [14] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2808
 [15] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2669
 [16] macro expansion
    @ ./loading.jl:2596 [inlined]
 [17] String(s::Symbol)
    @ Base ./lock.jl:376 [inlined]
 [18] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2560
 [19] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2536 [inlined]
 [20] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base ./module.jl:36 [inlined]
 [21] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [22] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base ./module.jl:137 [inlined]
 [23] top-level scope
    @ ~/.julia/packages/DiscoveryGraph/lusKv/src/DiscoveryGraph.jl:9
 [24] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [25] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3268
 [26] top-level scope
    @ stdin:5
 [27] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3110
 [29] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, Type{Symbol}, Tuple{Vector{SubString{String}}}})
    @ Base.Broadcast ./loading.jl:3120 [inlined]
 [30] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [31] _start()
    @ Base ./client.jl:593
during initialization of module C
in expression starting at /home/pkgeval/.julia/packages/DiscoveryGraph/lusKv/src/DiscoveryGraph.jl:1
in expression starting at stdin:5
              ✗ DiscoveryGraph

Precompilation completed after 52.55s


################################################################################
# Testing
#

     Testing DiscoveryGraph

Testing failed after 5.03s

ERROR: LoadError: expected package `Test [8dfed614]` to be registered
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] check_registered(registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec})
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2137
  [3] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2536
  [4] iterate(A::Vector{PackageSpec}, state::Int64)
    @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2511 [inlined]
  [5] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:479
  [6] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:446 [inlined]
  [7] up
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:177 [inlined]
  [8] #resolve#174
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:485 [inlined]
  [9] resolve
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:484 [inlined]
 [10] (::Pkg.Operations.var"#215#216"{Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache})()
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2804
 [11] with_temp_env(fn::Pkg.Operations.var"#215#216"{Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache}, temp_env::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2731
 [12] get(h::Dict{UUID, Pkg.Types.PackageEntry}, key::UUID, default::Nothing)
    @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2788 [inlined]
 [13] get(m::Pkg.Types.Manifest, key::UUID, default::Nothing)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2781 [inlined]
 [14] (::Pkg.Operations.var"#220#221"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2898
 [15] mktempdir(fn::Pkg.Operations.var"#220#221"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
    @ Base.Filesystem ./file.jl:936
 [16] mktempdir(fn::Function, parent::String)
    @ Base.Filesystem ./file.jl:932
 [17] sandbox(fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override_in::Pkg.Types.Project; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2844
 [18] iterate(A::Vector{PackageSpec}, state::Int64)
    @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2834 [inlined]
 [19] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3115
 [20] Cmd(cmd::Cmd)
    @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined]
 [21] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586
 [22] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
 [23] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
 [24] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [25] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
 [26] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [27] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:352
 [29] _start()
    @ Base ./client.jl:593
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 110.78s: there were unidentified errors