Package evaluation to test BurrowsWheelerAligner on Julia 1.14.0-DEV.2058 (afc71c255e*) started at 2026-04-19T15:19:45.656 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.36s ################################################################################ # Installation # Installing BurrowsWheelerAligner... Resolving package versions... Installed CodecZlib ───────────── v0.7.8 Installed OrderedCollections ──── v1.8.1 Installed StringViews ─────────── v1.3.7 Installed BWA_jll ─────────────── v0.7.17+1 Installed TranscodingStreams ──── v0.9.13 Installed DataStructures ──────── v0.18.22 Installed GenomicFeatures ─────── v2.1.0 Installed Indexes ─────────────── v0.1.3 Installed Compat ──────────────── v4.18.1 Installed PrecompileTools ─────── v1.3.3 Installed SIMD ────────────────── v3.7.2 Installed Twiddle ─────────────── v1.1.2 Installed BioGenerics ─────────── v0.1.5 Installed BioAlignments ───────── v3.1.0 Installed JLLWrappers ─────────── v1.7.1 Installed XAM ─────────────────── v0.4.2 Installed Automa ──────────────── v1.1.0 Installed Preferences ─────────── v1.5.2 Installed BurrowsWheelerAligner ─ v0.1.4 Installed BioSymbols ──────────── v5.2.0 Installed IntervalTrees ───────── v1.1.0 Installed BioSequences ────────── v3.5.1 Installed BGZFStreams ─────────── v0.3.2 Installed FASTX ───────────────── v2.1.7 Installing 1 artifacts Installed artifact BWA 530.2 KiB Updating `~/.julia/environments/v1.14/Project.toml` [231d3afb] + BurrowsWheelerAligner v0.1.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [67c07d97] + Automa v1.1.0 [28d598bf] + BGZFStreams v0.3.2 [00701ae9] + BioAlignments v3.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [231d3afb] + BurrowsWheelerAligner v0.1.4 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 [c2308a5c] + FASTX v2.1.7 ⌅ [899a7d2d] + GenomicFeatures v2.1.0 ⌅ [4ffb77ac] + Indexes v0.1.3 [524e6230] + IntervalTrees v1.1.0 [692b3bcd] + JLLWrappers v1.7.1 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [fdea26ae] + SIMD v3.7.2 [354b36f9] + StringViews v1.3.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [7200193e] + Twiddle v1.1.2 [d759349c] + XAM v0.4.2 [f8ebc3b1] + BWA_jll v0.7.17+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.1+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.29s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.3 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 1.5 s ✓ OrderedCollections 0.9 s ✓ Twiddle 1.2 s ✓ StringViews 1.2 s ✓ IntervalTrees 1.2 s ✓ Compat 1.8 s ✓ Preferences 2.7 s ✓ TranscodingStreams 0.9 s ✓ Compat → CompatLinearAlgebraExt 1.6 s ✓ JLLWrappers 1.3 s ✓ PrecompileTools 1.9 s ✓ BioGenerics 1.9 s ✓ CodecZlib 4.1 s ✓ DataStructures 2.4 s ✓ BWA_jll 3.4 s ✓ BioSymbols 15.0 s ✓ SIMD 1.9 s ✓ BGZFStreams 2.2 s ✓ GenomicFeatures 10.8 s ✓ BioSequences 20.6 s ✓ Automa 2.0 s ✓ Indexes 4.9 s ✓ BioAlignments 21.6 s ✓ FASTX 18.1 s ✓ XAM 4.0 s ✓ FASTX → BioSequencesExt 4.4 s ✓ BurrowsWheelerAligner 26 dependencies successfully precompiled in 133 seconds. 30 already precompiled. Precompilation completed after 165.56s ################################################################################ # Testing # Testing BurrowsWheelerAligner Status `/tmp/jl_tH0O2f/Project.toml` [231d3afb] BurrowsWheelerAligner v0.1.4 [c2308a5c] FASTX v2.1.7 [d759349c] XAM v0.4.2 [f8ebc3b1] BWA_jll v0.7.17+1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_tH0O2f/Manifest.toml` [67c07d97] Automa v1.1.0 [28d598bf] BGZFStreams v0.3.2 [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [231d3afb] BurrowsWheelerAligner v0.1.4 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 ⌅ [864edb3b] DataStructures v0.18.22 [c2308a5c] FASTX v2.1.7 ⌅ [899a7d2d] GenomicFeatures v2.1.0 ⌅ [4ffb77ac] Indexes v0.1.3 [524e6230] IntervalTrees v1.1.0 [692b3bcd] JLLWrappers v1.7.1 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [fdea26ae] SIMD v3.7.2 [354b36f9] StringViews v1.3.7 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [7200193e] Twiddle v1.1.2 [d759349c] XAM v0.4.2 [f8ebc3b1] BWA_jll v0.7.17+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.1+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... 2.615867 seconds (320.04 k allocations: 338.716 MiB, 11.81% gc time) Test Summary: | Pass Total Time BurrowsWheelerAligner.jl | 26 26 15.6s Testing BurrowsWheelerAligner tests passed Testing completed after 30.47s PkgEval succeeded after 233.13s