Package evaluation to test MolecularEvolution on Julia 1.14.0-DEV.2043 (b936235316*) started at 2026-04-16T20:37:05.966


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 17.29s


################################################################################
# Installation
#

Installing MolecularEvolution...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [9f975960] + MolecularEvolution v0.2.7
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.4
  [31c24e10] + Distributions v0.25.124
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.16.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [9f975960] + MolecularEvolution v0.2.7
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.37
  [21216c6a] + Preferences v1.5.2
  [43287f4e] + PtrArrays v1.4.0
  [1fd47b50] + QuadGK v2.11.3
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.7.2
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.10
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 5.96s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
  25.0 s  ✓ FASTX
  13.8 s  ✓ Distributions
   8.5 s  ✓ MolecularEvolution
   5.6 s  ✓ Distributions → DistributionsTestExt
  4 dependencies successfully precompiled in 54 seconds. 54 already precompiled.

Precompilation completed after 83.42s


################################################################################
# Testing
#

     Testing MolecularEvolution
      Status `/tmp/jl_v7OLed/Project.toml`
⌃ [c2308a5c] FASTX v2.1.5
  [9f975960] MolecularEvolution v0.2.7
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_v7OLed/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
⌃ [67c07d97] Automa v1.0.3
⌃ [47718e42] BioGenerics v0.1.4
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.4
  [31c24e10] Distributions v0.25.124
  [ffbed154] DocStringExtensions v0.9.5
⌃ [c2308a5c] FASTX v2.1.5
  [1a297f60] FillArrays v1.16.0
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [9f975960] MolecularEvolution v0.2.7
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.37
⌃ [aea7be01] PrecompileTools v1.2.1
⌃ [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.4.0
  [1fd47b50] QuadGK v2.11.3
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.7.2
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.10
  [4c63d2b9] StatsFuns v1.5.2
⌃ [354b36f9] StringViews v1.3.3
⌅ [3bb67fe8] TranscodingStreams v0.10.7
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.30+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
fatal: error thrown and no exception handler available.
MethodError(f=Base.startswith, args=("/home/pkgeval/.julia/packages/StringViews/gFPyP/src/StringViews.jl", "/home/pkgeval/.julia/"), world=0x000000000000a080)
jl_method_error_bare at /source/src/gf.c:3155
jl_method_error at /source/src/gf.c:3173
jl_f_throw_methoderror at /source/src/builtins.c:637 [inlined]
jl_f_throw_methoderror at /source/src/builtins.c:633
replace_depot_path at ./loading.jl:3653
unknown function (ip: 0x73733af109da) at (unknown file)
_jl_invoke at /source/src/gf.c:4113 [inlined]
ijl_apply_generic at /source/src/gf.c:4339
jl_apply at /source/src/julia.h:2301 [inlined]
write_dependency_list at /source/src/staticdata_utils.c:772
jl_write_header_for_incremental at /source/src/staticdata.c:3246 [inlined]
ijl_create_system_image at /source/src/staticdata.c:3288
ijl_write_compiler_output at /source/src/precompile.c:140
ijl_atexit_hook at /source/src/init.c:280
jl_repl_entrypoint at /source/src/jlapi.c:1139
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x737351341249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("354b36f9-a18e-4713-926e-db85100087ba"), "StringViews") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2812
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2666
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base ./module.jl:101
 [11] top-level scope
    @ ~/.julia/packages/FASTX/lnY23/src/FASTX.jl:3
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3265
 [14] top-level scope
    @ stdin:5
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3107
 [17] include_string
    @ ./loading.jl:3117 [inlined]
 [18] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [19] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/FASTX/lnY23/src/FASTX.jl:1
in expression starting at stdin:5
  2 dependencies had output during precompilation:
┌ FASTX
│  [Output was shown above]
└  
┌ StringViews
│  fatal: error thrown and no exception handler available.
│  MethodError(f=Base.startswith, args=("/home/pkgeval/.julia/packages/StringViews/gFPyP/src/StringViews.jl", "/home/pkgeval/.julia/"), world=0x000000000000a080)
│  jl_method_error_bare at /source/src/gf.c:3155
│  jl_method_error at /source/src/gf.c:3173
│  jl_f_throw_methoderror at /source/src/builtins.c:637 [inlined]
│  jl_f_throw_methoderror at /source/src/builtins.c:633
│  replace_depot_path at ./loading.jl:3653
│  unknown function (ip: 0x73733af109da) at (unknown file)
│  _jl_invoke at /source/src/gf.c:4113 [inlined]
│  ijl_apply_generic at /source/src/gf.c:4339
│  jl_apply at /source/src/julia.h:2301 [inlined]
│  write_dependency_list at /source/src/staticdata_utils.c:772
│  jl_write_header_for_incremental at /source/src/staticdata.c:3246 [inlined]
│  ijl_create_system_image at /source/src/staticdata.c:3288
│  ijl_write_compiler_output at /source/src/precompile.c:140
│  ijl_atexit_hook at /source/src/init.c:280
│  jl_repl_entrypoint at /source/src/jlapi.c:1139
│  main at /source/cli/loader_exe.c:58
│  unknown function (ip: 0x737351341249) at /lib/x86_64-linux-gnu/libc.so.6
│  __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
│  unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
└  
ERROR: LoadError: The following 2 packages failed to precompile:

FASTX 
Failed to precompile FASTX [c2308a5c-f048-11e8-3e8a-31650f418d12] to "/home/pkgeval/.julia/compiled/v1.14/FASTX/jl_IJMZ19" (ProcessExited(1)).

StringViews 
Failed to precompile StringViews [354b36f9-a18e-4713-926e-db85100087ba] to "/home/pkgeval/.julia/compiled/v1.14/StringViews/jl_3P42BD" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/MolecularEvolution/rRKnS/test/runtests.jl:1

Testing failed after 100.55s

ERROR: LoadError: Package MolecularEvolution errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:352
 [14] _start()
    @ Base ./client.jl:593
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 230.19s: package fails to precompile