Package evaluation to test CrystalNets on Julia 1.14.0-DEV.2043 (b936235316*) started at 2026-04-16T20:50:08.969 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 19.75s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [7952bbbe] + CrystalNets v1.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.2.0 [864edb3b] + DataStructures v0.19.4 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] + PeriodicGraphs v1.0.1 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.1+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 6.16s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.3 s ✓ Chemfiles_jll 2.3 s ✓ spglib_jll 7.5 s ✓ AtomsBase 89.5 s ✓ PeriodicGraphs 9.7 s ✓ Chemfiles 112.2 s ✓ PeriodicGraphEmbeddings 26.7 s ✓ PeriodicGraphEquilibriumPlacement 370.9 s ✓ CrystalNets 8 dependencies successfully precompiled in 622 seconds. 59 already precompiled. Precompilation completed after 651.61s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_baHsow/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [86223c79] Graphs v1.14.0 [18c5b727] PeriodicGraphs v1.0.1 [90137ffa] StaticArrays v1.9.18 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_baHsow/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [864edb3b] DataStructures v0.19.4 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.14.0 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] PeriodicGraphs v1.0.1 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.1+0 [3f19e933] p7zip_jll v17.8.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 73 3 76 19m29.6s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 0.8s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 9m49.5s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 50.7s Test Summary: | Pass Broken Total Time Executable | 29 1 30 9.3s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 ........................................... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 37 running 1 of 1 signal (10): User defined signal 1 checkbounds at ./essentials.jl:387 [inlined] checkbounds at ./essentials.jl:391 [inlined] getindex at ./essentials.jl:1039 [inlined] _fkeep! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:1792 fkeep! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:1856 [inlined] triu! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:1867 [inlined] triu! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:1867 [inlined] linsolve! at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:312 dixon_p at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:442 try_modulo at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:487 [inlined] dixon_solve at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:507 equilibrium at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/embedding.jl:41 CrystalNet at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:675 #UnderlyingNets##8 at ./none (unknown line) iterate at ./generator.jl:48 [inlined] _append! at ./array.jl:1446 append! at ./array.jl:1439 [inlined] UnderlyingNets at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:992 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:86 [inlined] #topological_genome#224 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 unknown function (ip: 0x714484dc93fc) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:768 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:782 ijl_toplevel_eval_in at /source/src/toplevel.c:827 eval at ./boot.jl:517 include_string at ./loading.jl:3107 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3167 include at ./Base.jl:327 IncludeInto at ./Base.jl:328 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:768 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:782 ijl_toplevel_eval_in at /source/src/toplevel.c:827 eval at ./boot.jl:517 exec_options at ./client.jl:318 _start at ./client.jl:593 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7144e16fa249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) . ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007144c6ffc010 Total snapshots: 52. Utilization: 100% ╎51 @Base/client.jl:593 _start() ╎ 51 @Base/client.jl:318 exec_options(opts::Base.JLOptions) ╎ 51 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ 51 @Base/Base.jl:328 (::Base.IncludeInto)(fname::String) ╎ 51 @Base/Base.jl:327 include(mapexpr::Function, mod::Module, _path::Stri… ╎ 51 @Base/loading.jl:3167 _include(mapexpr::Function, mod::Module, _path… ╎ ╎ 51 @Base/loading.jl:3107 include_string(mapexpr::typeof(identity), mod… ╎ ╎ 51 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ 51 @CrystalNets/…query.jl:90 topological_genome(g::PeriodicGraph3D) ╎ ╎ 51 @CrystalNets/…uery.jl:90 #topological_genome#224 ╎ ╎ 18 @CrystalNets/…uery.jl:86 topological_genome ╎ ╎ ╎ 1 @CrystalNets/…pes.jl:977 UnderlyingNets(g::PeriodicGraph3D, op… ╎ ╎ ╎ 1 @PeriodicGraphs/….jl:430 split_connected_components(graph::Pe… ╎ ╎ ╎ 1 @PeriodicGraphs/…jl:371 _explore_one_component!(expected::Ve… ╎ ╎ ╎ 1 @PeriodicGraphs/…jl:130 PeriodicGraph3D(nv::Int64, t::Vecto… ╎ ╎ ╎ 1 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:802 _sort!(v::Vector{PeriodicEdge3D}, … ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1380 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1154 _sort!(v::Vector{PeriodicEdg… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1165 _sort!(v::Vector{PeriodicE… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:845 _sort!(v::Vector{PeriodicE… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:118 lt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:164 isless 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ 17 @CrystalNets/…pes.jl:992 UnderlyingNets(g::PeriodicGraph3D, op… ╎ ╎ ╎ 17 @Base/array.jl:1439 append! ╎ ╎ ╎ 17 @Base/array.jl:1446 _append!(a::Vector{Tuple{Vector{CrystalN… ╎ ╎ ╎ 17 @Base/generator.jl:48 iterate ╎ ╎ ╎ 17 none:? (::CrystalNets.var"#UnderlyingNets##8#UnderlyingNet… ╎ ╎ ╎ ╎ 17 @CrystalNets/…s.jl:675 (CrystalNet3D)(cell::PeriodicGraph… ╎ ╎ ╎ ╎ 17 @PeriodicGraphEquilibriumPlacement/…:41 equilibrium(g::P… ╎ ╎ ╎ ╎ 17 @PeriodicGraphEquilibriumPlacement/…:507 dixon_solve(::… ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:485 try_modulo ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:255 rational_lu(… ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:58 rational_lu!… 2╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:192 searchsortedfirst ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:68 rational_lu!… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:60 - ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:1078 Int32 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:988 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:951 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:74 rational_lu!… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:25 compat_lu ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:897 materialize ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:195 copy ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:184 _noshapecheck_map(::Type{Per… ╎ ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:272 _map_zeropres!(f::Type{Peri… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1043 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1048 _setindex! ╎ ╎ ╎ ╎ 13 @PeriodicGraphEquilibriumPlacement/…:487 try_modulo ╎ ╎ ╎ ╎ 7 @PeriodicGraphEquilibriumPlacement/…:441 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:116 * ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:119 mul ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:123 _mul ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:270 mul! ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:302 mul! ╎ ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:333 _mul! ╎ ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:348 generic_matmatmul_wrapper! ╎ ╎ ╎ ╎ ╎ ╎ 7 @SparseArrays/…:50 generic_matmatmul! ╎ ╎ ╎ ╎ ╎ ╎ 7 @SparseArrays/…:60 spdensemul! ╎ ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:89 _spmatmul!(C::Matrix{Big… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1058 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:507 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:172 mul(a::BigInt, b::BigIn… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:171 mul! ╎ ╎ ╎ ╎ ╎ ╎ 6 @SparseArrays/…:91 _spmatmul!(C::Matrix{Big… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:569 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:568 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:201 mul_si(a::BigInt, b::In… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:507 + ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:172 add(a::BigInt, b::BigInt) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:70 _ 5╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:442 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:309 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1865 tril! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1865 tril! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1856 fkeep! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1793 _fkeep!(f::SparseArrays.var… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1040 getindex ╎ ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:312 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 3 @SparseArrays/…:2800 getindex(A::SparseArrays.Spars… 1╎ ╎ ╎ ╎ ╎ 3 @SparseArrays/…:2784 getindex_cols(A::SparseArrays… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1043 setindex! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1048 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1039 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:391 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1867 triu! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1867 triu! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1856 fkeep! 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:0 _fkeep!(f::SparseArrays.var"#t… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:313 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:295 backward_s… ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:296 macro ex… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:74 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ 33 @CrystalNets/…uery.jl:87 topological_genome ╎ ╎ ╎ 33 @CrystalNets/…ery.jl:153 topological_genome(group::UnderlyingN… ╎ ╎ ╎ 3 @CrystalNets/…ery.jl:22 topological_genome(net::CrystalNet3D{… ╎ ╎ ╎ 3 @CrystalNets/…ty.jl:232 collision_nodes(net::CrystalNet3D{Ra… ╎ ╎ ╎ 3 @CrystalNets/…ty.jl:87 get_CollisionList(g::PeriodicGraph3D… ╎ ╎ ╎ 3 @CrystalNets/…ty.jl:28 get_CollisionNode(g::PeriodicGraph3… ╎ ╎ ╎ ╎ 2 @Base/array.jl:828 collect(itr::Base.Generator{UnitRange{… ╎ ╎ ╎ ╎ 2 @Base/generator.jl:48 iterate ╎ ╎ ╎ ╎ 2 none:? #get_CollisionNode##0 ╎ ╎ ╎ ╎ 2 @PeriodicGraphs/…:148 coordination_sequence(g::Periodi… ╎ ╎ ╎ ╎ 2 @PeriodicGraphs/…:107 _neighborhood(g::PeriodicGraph3… ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1368 push! ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1371 _push! ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1228 _growend! ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1208 _growend_internal!(a::Vector{… ╎ ╎ ╎ ╎ ╎ 2 @Base/…mory.jl:139 unsafe_copyto! 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/cmem.jl:28 memmove ╎ ╎ ╎ ╎ 1 @Base/array.jl:838 collect(itr::Base.Generator{UnitRange{… ╎ ╎ ╎ ╎ 1 @Base/array.jl:864 collect_to_with_first! ╎ ╎ ╎ ╎ 1 @Base/array.jl:909 collect_to! ╎ ╎ ╎ ╎ 1 @Base/…nerator.jl:48 iterate ╎ ╎ ╎ ╎ 1 none:? #get_CollisionNode##0 ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:148 coordination_sequence(g::Perio… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:99 _neighborhood(g::PeriodicGraph… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:133 hash_position ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:81 hash_position ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:684 checkbounds ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:724 checkbounds_indices 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:724 checkbounds_indices ╎ ╎ ╎ 30 @CrystalNets/…ery.jl:56 topological_genome(net::CrystalNet3D{… ╎ ╎ ╎ 30 @CrystalNets/…ery.jl:63 topological_genome(net::CrystalNet3D… ╎ ╎ ╎ 1 @CrystalNets/…gy.jl:661 topological_key(net::CrystalNet3D{R… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:283 find_candidates(net::CrystalNet3D{R… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:189 partition_by_coordination_sequence ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:192 partition_by_coordination_sequenc… ╎ ╎ ╎ ╎ 1 @Base/array.jl:838 collect(itr::Base.Generator{Vector{I… ╎ ╎ ╎ ╎ 1 @Base/array.jl:864 collect_to_with_first! ╎ ╎ ╎ ╎ 1 @Base/array.jl:909 collect_to! ╎ ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ ╎ 1 none:? #partition_by_coordination_sequence##2 ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:148 coordination_sequence(g::Per… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:85 _neighborhood(g::PeriodicGra… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1609 sizehint! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1636 sizehint!(a::Vector{Tuple{P… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1228 _growend! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1204 _growend_internal!(a::Vect… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1124 array_new_memory 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:654 GenericMemory ╎ ╎ ╎ 18 @CrystalNets/…gy.jl:669 topological_key(net::CrystalNet3D{R… ╎ ╎ ╎ 18 @CrystalNets/…y.jl:112 candidate_key ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:121 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @Base/array.jl:622 zeros ╎ ╎ ╎ ╎ 1 @Base/array.jl:626 zeros ╎ ╎ ╎ ╎ 1 @Base/boot.jl:727 Array ╎ ╎ ╎ ╎ 1 @Base/boot.jl:714 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:654 GenericMemory ╎ ╎ ╎ ╎ 3 @CrystalNets/…y.jl:127 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 3 @StaticArrays/….jl:5 inv ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:27 _inv ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:24 / ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:33 map ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:42 _map ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:24 #/##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:467 / ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:104 // ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:268 mul_with_overflow(x::Int128… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:391 cld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:430 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:29 _inv ╎ ╎ ╎ ╎ 2 @StaticArrays/…jl:245 cross ╎ ╎ ╎ ╎ 2 @StaticArrays/…l:251 _cross ╎ ╎ ╎ ╎ ╎ 2 @Base/…tional.jl:414 -(x::Rational{Int128}, y::Ratio… ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:297 checked_mul 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:264 mul_with_overflow(x::Int128, y… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:48 Rational ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:43 Rational 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ 4 @CrystalNets/…y.jl:133 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @Base/broadcast.jl:897 materialize ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:357 #flatten##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:405 prepare_args ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:401 #_make_makeargs1##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:414 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:48 Rational ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:43 Rational ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:61 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:343 div ╎ ╎ ╎ ╎ 3 @StaticArrays/….jl:10 * ╎ ╎ ╎ ╎ 3 @StaticArrays/….jl:89 _mul ╎ ╎ ╎ ╎ 3 @StaticArrays/…jl:108 macro expansion ╎ ╎ ╎ ╎ 3 @Base/…motion.jl:631 muladd(x::Rational{Int64}, y::Ra… ╎ ╎ ╎ ╎ ╎ 2 @Base/…tional.jl:450 * ╎ ╎ ╎ ╎ ╎ 2 @Base/…tional.jl:61 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:269 div 2╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:182 flipsign ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:404 + ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:60 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 1 @Base/…tfuncs.jl:63 gcd ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:84 _gcd ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:580 >> 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:574 >> ╎ ╎ ╎ ╎ 2 @CrystalNets/…y.jl:136 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:897 materialize ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:922 copy ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:950 copyto! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:997 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:615 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:619 _getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:674 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:699 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:668 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1039 getindex 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:391 checkbounds ╎ ╎ ╎ ╎ 1 @Base/…nsional.jl:1752 unique ╎ ╎ ╎ ╎ 1 @Base/…nsional.jl:1752 #unique#568 ╎ ╎ ╎ ╎ 1 @Base/…sional.jl:1754 _unique_dims ╎ ╎ ╎ ╎ 1 @Base/set.jl:230 unique(itr::Vector{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/set.jl:131 in! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:270 ht_keyindex2_shorthash!(h::Dict{I… ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:148 rehash!(h::Dict{Int64, Nothing},… 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:654 GenericMemory ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:141 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:800 _sort!(v::Vector{Tuple{SVector{3… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:845 _sort!(v::Vector{Tuple{SVector{… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ring.jl:121 lt ╎ ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…:141 #candidate_key##0 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1040 getindex ╎ ╎ ╎ ╎ 7 @CrystalNets/…y.jl:152 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 3 @Base/broadcast.jl:897 materialize ╎ ╎ ╎ ╎ 3 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 3 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 3 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 3 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 3 @Base/…adcast.jl:357 #flatten##0 ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:405 prepare_args ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:401 #_make_makeargs1##0 ╎ ╎ ╎ ╎ ╎ 2 @Base/…onal.jl:405 +(x::Rational{Int128}, y::Rat… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:175 checked_add 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:142 add_with_overflow ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:30 checked_mul ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ked.jl:268 mul_with_overflow(x::Int128… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:414 -(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:48 Rational 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:44 Rational ╎ ╎ ╎ ╎ 4 @StaticArrays/….jl:10 * ╎ ╎ ╎ ╎ 4 @StaticArrays/….jl:89 _mul ╎ ╎ ╎ ╎ 4 @StaticArrays/…jl:108 macro expansion ╎ ╎ ╎ ╎ 2 @Base/…motion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 2 @Base/…motion.jl:631 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:451 * ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:404 +(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 div 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:182 flipsign ╎ ╎ ╎ ╎ 2 @Base/…tional.jl:451 * ╎ ╎ ╎ ╎ ╎ 2 @Base/checked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:268 mul_with_overflow(x::Int128, y… ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:273 mul_with_overflow(x::Int128, y… ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:391 cld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:430 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ 11 @CrystalNets/…gy.jl:684 topological_key(net::CrystalNet3D{R… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:402 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:168 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:32 macro expansion ╎ ╎ ╎ ╎ 1 @Base/set.jl:570 allunique ╎ ╎ ╎ ╎ 1 @Base/set.jl:538 _hashed_allunique(C::Vector{Tuple{Int… ╎ ╎ ╎ ╎ 1 @Base/set.jl:133 in! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:339 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:169 rehash!(h::Dict{Tuple{Int64, Int6… ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:129 hashindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…shing.jl:40 hash ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:579 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:579 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:579 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nal.jl:2110 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…al.jl:2075 hash_shaped ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…al.jl:2085 hash_shaped ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…al.jl:2072 union_split ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…al.jl:647 hash(x::Rational{Int64},… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:637 == ╎ ╎ ╎ 8 @CrystalNets/…y.jl:403 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 4 @CrystalNets/…y.jl:356 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 1 @Base/broadcast.jl:897 materialize ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:357 #flatten##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:405 prepare_args ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:401 #_make_makeargs1##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:414 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:48 Rational ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:43 Rational ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:61 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:343 div ╎ ╎ ╎ ╎ 3 @StaticArrays/….jl:10 * ╎ ╎ ╎ ╎ 3 @StaticArrays/….jl:89 _mul ╎ ╎ ╎ ╎ 3 @StaticArrays/…jl:108 macro expansion ╎ ╎ ╎ ╎ 3 @Base/…motion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 3 @Base/…motion.jl:631 muladd ╎ ╎ ╎ ╎ ╎ 2 @Base/…tional.jl:451 * ╎ ╎ ╎ ╎ ╎ 2 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 2 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:391 cld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:430 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:405 +(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:391 cld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:430 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 3 @CrystalNets/…y.jl:358 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 3 @Base/broadcast.jl:897 materialize ╎ ╎ ╎ ╎ 3 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 3 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 3 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 3 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 3 @Base/…tional.jl:414 -(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 3 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 3 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:391 cld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:430 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:362 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:32 macro expansion ╎ ╎ ╎ ╎ 1 @Base/set.jl:570 allunique ╎ ╎ ╎ ╎ 1 @Base/set.jl:538 _hashed_allunique(C::Vector{Tuple{Int… ╎ ╎ ╎ ╎ 1 @Base/set.jl:133 in! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:339 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:159 rehash!(h::Dict{Tuple{Int64, Int6… 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:654 GenericMemory ╎ ╎ ╎ 1 @CrystalNets/…y.jl:407 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:802 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1380 _sort!(v::Vector{Tuple{Int64,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1165 _sort!(v::Vector{Tuple{Int6… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:848 _sort!(v::Vector{Tuple{Int6… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1043 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1048 _setindex! ╎ ╎ ╎ 1 @CrystalNets/…y.jl:439 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:88 findbasis(edges::Vector{Tuple{Int64… ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:32 macro expansion ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:202 all ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:211 _all ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:88 (::CrystalNets.var"#findbasis##0… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:10 * ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:89 _mul ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:108 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:454 *(x::Rational{BigInt}, y::Int… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:404 promote ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:379 _promote ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:315 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:71 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:92 finalizer . ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) . ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ..┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007634e05b84c0 Total snapshots: 414. Utilization: 0% ╎414 @Base/task.jl:1168 wait_forever() 413╎ 414 @Base/task.jl:1246 wait() ........ [37] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/gASyq/test/runtests.jl:415 gc_sweep_pool at /source/src/gc-stock.c:1442 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3215 ijl_gc_collect at /source/src/gc-stock.c:3523 maybe_collect at /source/src/gc-stock.c:357 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:734 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:792 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:806 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:654 [inlined] array_new_memory at ./array.jl:1124 [inlined] _growend_internal! at ./array.jl:1204 _growend! at ./array.jl:1228 [inlined] resize! at ./array.jl:1563 _allocres at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/higherorderfns.jl:254 [inlined] _noshapecheck_map at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/higherorderfns.jl:183 copy at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/higherorderfns.jl:195 [inlined] materialize at ./broadcast.jl:897 [inlined] compat_lu at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:25 [inlined] rational_lu! at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:74 rational_lu at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:255 try_modulo at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:485 [inlined] dixon_solve at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:507 equilibrium at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/embedding.jl:41 CrystalNet at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:675 #UnderlyingNets##8 at ./none (unknown line) iterate at ./generator.jl:48 [inlined] _append! at ./array.jl:1446 append! at ./array.jl:1439 [inlined] UnderlyingNets at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:992 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:86 [inlined] #topological_genome#224 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 unknown function (ip: 0x714484dc93fc) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:768 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:782 ijl_toplevel_eval_in at /source/src/toplevel.c:827 eval at ./boot.jl:517 include_string at ./loading.jl:3107 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3167 include at ./Base.jl:327 IncludeInto at ./Base.jl:328 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:768 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:782 ijl_toplevel_eval_in at /source/src/toplevel.c:827 eval at ./boot.jl:517 exec_options at ./client.jl:318 _start at ./client.jl:593 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2301 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7144e16fa249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1279428966 (Pool: 1279424362; Big: 4604); GC: 494 PkgEval terminated after 2721.76s: test duration exceeded the time limit