Package evaluation to test PhyNEST on Julia 1.14.0-DEV.2028 (45a2de3f7a*) started at 2026-04-13T04:27:04.382 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.43s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Libuuid_jll ───────────────── v2.42.0+0 Installed InlineStrings ─────────────── v1.4.5 Installed Functors ──────────────────── v0.3.0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Cairo_jll ─────────────────── v1.18.6+0 Installed Xorg_libXinerama_jll ──────── v1.1.7+0 Installed OrderedCollections ────────── v1.8.1 Installed Optim ─────────────────────── v1.13.3 Installed libsass_jll ───────────────── v3.6.6+0 Installed SentinelArrays ────────────── v1.4.9 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed NaNMath ───────────────────── v1.1.3 Installed Graphics ──────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.3 Installed FileIO ────────────────────── v1.18.0 Installed Tables ────────────────────── v1.12.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed NLSolversBase ─────────────── v7.10.0 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Reexport ──────────────────── v1.2.2 Installed EnumX ─────────────────────── v1.0.7 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Preferences ───────────────── v1.5.2 Installed Missings ──────────────────── v1.2.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed EpollShim_jll ─────────────── v0.0.20230411+1 (no artifacts on this platform) Installed TableTraits ───────────────── v1.0.1 Installed LERC_jll ──────────────────── v4.1.0+0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed ADTypes ───────────────────── v1.21.0 Installed OpenSSH_jll ───────────────── v10.3.1+0 Installed DiffResults ───────────────── v1.1.0 Installed AbstractTrees ─────────────── v0.4.5 Installed Sass ──────────────────────── v0.2.0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.16.0 Installed DataStructures ────────────── v0.18.22 Installed DelimitedFiles ────────────── v1.9.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed Xorg_libXdamage_jll ───────── v1.1.7+0 Installed Cairo ─────────────────────── v1.1.1 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed MethodAnalysis ────────────── v1.0.0 Installed ArrayInterface ────────────── v7.23.0 Installed RoundingIntegers ──────────── v1.1.0 Installed CEnum ─────────────────────── v0.5.0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed DataValueInterfaces ───────── v1.0.0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed CommonSubexpressions ──────── v0.3.1 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed libpng_jll ────────────────── v1.6.57+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed BitFlags ──────────────────── v0.1.9 Installed IrrationalConstants ───────── v0.2.6 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed IOCapture ─────────────────── v0.2.5 Installed Scratch ───────────────────── v1.3.0 Installed PDMats ────────────────────── v0.11.35 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed PooledArrays ──────────────── v1.4.3 Installed Setfield ──────────────────── v1.1.2 Installed BenchmarkTools ────────────── v1.7.0 Installed Graphene_jll ──────────────── v1.10.8+0 Installed FASTX ─────────────────────── v2.1.7 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DocStringExtensions ───────── v0.9.5 Installed WorkerUtilities ───────────── v1.6.1 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed BioSequences ──────────────── v3.5.1 Installed ForwardDiff ───────────────── v1.3.3 Installed StatsModels ───────────────── v0.6.33 Installed DifferentiationInterface ──── v0.7.16 Installed MathOptInterface ──────────── v1.50.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed AliasTables ───────────────── v1.1.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed Combinatorics ─────────────── v1.1.0 Installed CSV ───────────────────────── v0.10.16 Installed StringViews ───────────────── v1.3.7 Installed SIMD ──────────────────────── v3.7.2 Installed DataAPI ───────────────────── v1.16.0 Installed Documenter ────────────────── v0.27.25 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Colors ────────────────────── v0.13.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Twiddle ───────────────────── v1.1.2 Installed InvertedIndices ───────────── v1.3.1 Installed GtkObservables ────────────── v2.2.2 Installed StaticArraysCore ──────────── v1.4.4 Installed Xorg_libxkbfile_jll ───────── v1.2.0+0 Installed StaticArrays ──────────────── v1.9.18 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Glib_jll ──────────────────── v2.86.3+0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed StringManipulation ────────── v0.4.4 Installed ColorTypes ────────────────── v0.12.1 Installed Git_jll ───────────────────── v2.53.0+0 Installed Parsers ───────────────────── v2.8.3 Installed DiffRules ─────────────────── v1.15.1 Installed JSON ──────────────────────── v0.21.4 Installed PrettyTables ──────────────── v3.3.2 Installed PhyloNetworks ─────────────── v0.15.3 Installed Distributions ─────────────── v0.25.123 Installed FiniteDiff ────────────────── v2.29.0 Installed Rmath ─────────────────────── v0.9.0 Installed DocumenterTools ───────────── v0.1.21 Installed BioGenerics ───────────────── v0.1.5 Installed StatsFuns ─────────────────── v1.5.2 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.3+0 Installed Pango_jll ─────────────────── v1.57.0+0 Installed MutableArithmetics ────────── v1.7.1 Installed NLopt ─────────────────────── v0.6.5 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed FilePathsBase ─────────────── v0.9.24 Installed GLM ───────────────────────── v1.8.3 Installed JpegTurbo_jll ─────────────── v3.1.5+0 Installed DataFrames ────────────────── v1.8.1 Installed FlameGraphs ───────────────── v1.1.0 Installed ConstructionBase ──────────── v1.6.0 Installed Adapt ─────────────────────── v4.5.2 Installed HypergeometricFunctions ───── v0.3.28 Installed PhyNEST ───────────────────── v0.1.12 Installed Xorg_libX11_jll ───────────── v1.8.13+0 Installed Libmount_jll ──────────────── v2.42.0+0 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed Suppressor ────────────────── v0.2.8 Installed Compat ────────────────────── v4.18.1 Installed TranscodingStreams ────────── v0.11.3 Installed Statistics ────────────────── v1.11.1 Installed PositiveFactorizations ────── v0.2.4 Installed CodecBzip2 ────────────────── v0.8.5 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed StatsAPI ──────────────────── v1.8.0 Installed BioSymbols ────────────────── v5.2.0 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed PrecompileTools ───────────── v1.3.3 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed PtrArrays ─────────────────── v1.4.0 Installed ProfileView ───────────────── v1.10.3 Installed iso_codes_jll ─────────────── v4.20.1+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed FreeType2_jll ─────────────── v2.14.3+1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed Gumbo ─────────────────────── v0.8.3 Installed IntervalSets ──────────────── v0.7.14 Installed SpecialFunctions ──────────── v2.7.2 Installed LineSearches ──────────────── v7.5.1 Installed Gtk4 ──────────────────────── v0.7.12 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXext_jll ──────────── v1.3.8+0 Installed Xorg_libXrandr_jll ────────── v1.5.6+0 Installed MathProgBase ──────────────── v0.7.8 Installed ANSIColoredPrinters ───────── v0.0.1 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed Automa ────────────────────── v1.1.0 Installing 60 artifacts Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Wayland 390.6 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact FriBidi 78.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Xorg_libXext 286.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact Libepoxy 504.4 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Graphene 223.2 KiB Installed artifact Xorg_libXdamage 24.2 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Libffi 44.2 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact libpng 329.4 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Cairo 2.2 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_libXinerama 25.5 KiB Installed artifact Gumbo 703.8 KiB Installed artifact Librsvg 9.3 MiB Installed artifact XZ 1.6 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libmount 6.9 MiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact LERC 267.4 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact libsass 8.9 MiB Installed artifact Xorg_libXrandr 97.3 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact XML2 2.5 MiB Installed artifact Expat 283.3 KiB Installed artifact Xorg_libxkbfile 91.1 KiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact OpenSSH 4.1 MiB Installed artifact testfiles 6.2 MiB Installed artifact Pango 2.0 MiB Installed artifact iso_codes 7.9 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libX11 4.8 MiB Installed artifact Libuuid 3.9 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Glib 7.7 MiB Installed artifact GTK4 14.1 MiB Installed artifact Git 49.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.5.2 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.23.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.7.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.16 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.7 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.18.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.3 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.12 [8710efd8] + GtkObservables v2.2.2 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.14 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.50.1 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.7.1 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [c46f51b8] + ProfileView v1.10.3 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.4 [354b36f9] + StringViews v1.3.7 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.6+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [7746bdde] + Glib_jll v2.86.3+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [88015f11] + LERC_jll v4.1.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.42.0+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.42.0+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.3.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.7+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.20.1+0 [b53b4c65] + libpng_jll v1.6.57+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.1+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 40.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3344.1 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3756.9 ms ✓ MacroTools 1334.0 ms ✓ InlineStrings 629.7 ms ✓ Reexport 943.7 ms ✓ ConstructionBase 1735.0 ms ✓ IrrationalConstants 659.9 ms ✓ DataValueInterfaces 1068.6 ms ✓ StatsAPI 1035.9 ms ✓ Observables 715.6 ms ✓ Twiddle 842.8 ms ✓ IntervalSets 723.8 ms ✓ CEnum 825.6 ms ✓ Functors 1664.4 ms ✓ Combinatorics 850.5 ms ✓ StringViews 992.5 ms ✓ TranscodingStreams 647.2 ms ✓ LaTeXStrings 866.6 ms ✓ Statistics 740.2 ms ✓ StaticArraysCore 624.8 ms ✓ PtrArrays 804.4 ms ✓ ANSIColoredPrinters 749.6 ms ✓ PositiveFactorizations 656.5 ms ✓ DataAPI 655.7 ms ✓ InvertedIndices 661.7 ms ✓ BitFlags 719.8 ms ✓ ShiftedArrays 858.4 ms ✓ AbstractTrees 712.0 ms ✓ EnumX 796.1 ms ✓ WorkerUtilities 1749.8 ms ✓ FillArrays 670.3 ms ✓ IndirectArrays 694.3 ms ✓ RoundingIntegers 1076.3 ms ✓ OrderedCollections 1103.9 ms ✓ ADTypes 920.1 ms ✓ DocStringExtensions 597.9 ms ✓ IteratorInterfaceExtensions 1574.1 ms ✓ Crayons 760.5 ms ✓ IOCapture 763.1 ms ✓ Suppressor 859.5 ms ✓ DelimitedFiles 888.0 ms ✓ NaNMath 1053.4 ms ✓ Requires 1870.2 ms ✓ MathProgBase 969.4 ms ✓ Scratch 2340.1 ms ✓ SentinelArrays 1849.8 ms ✓ PDMats 1217.4 ms ✓ Compat 1507.6 ms ✓ Preferences 13181.4 ms ✓ MutableArithmetics 2236.9 ms ✓ CommonSubexpressions 833.4 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 766.4 ms ✓ IntervalSets → IntervalSetsRandomExt 781.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 947.0 ms ✓ BioGenerics 937.6 ms ✓ CodecZlib 1372.8 ms ✓ Statistics → SparseArraysExt 4049.3 ms ✓ FixedPointNumbers 758.8 ms ✓ IntervalSets → IntervalSetsStatisticsExt 867.1 ms ✓ DiffResults 965.7 ms ✓ AliasTables 983.8 ms ✓ Missings 1048.1 ms ✓ PooledArrays 871.4 ms ✓ LeftChildRightSiblingTrees 1136.9 ms ✓ MethodAnalysis 1758.8 ms ✓ FillArrays → FillArraysSparseArraysExt 1072.0 ms ✓ FillArrays → FillArraysStatisticsExt 786.7 ms ✓ ADTypes → ADTypesConstructionBaseExt 1951.0 ms ✓ DifferentiationInterface 1385.9 ms ✓ LogExpFunctions 774.7 ms ✓ TableTraits 991.1 ms ✓ Adapt 9158.2 ms ✓ FileIO 1452.0 ms ✓ FillArrays → FillArraysPDMatsExt 861.8 ms ✓ Compat → CompatLinearAlgebraExt 1227.6 ms ✓ PrecompileTools 1494.5 ms ✓ JLLWrappers 3059.1 ms ✓ Setfield 2916.1 ms ✓ ColorTypes 1584.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 2019.3 ms ✓ Tables 1218.5 ms ✓ ArrayInterface 1542.8 ms ✓ Adapt → AdaptSparseArraysExt 2688.0 ms ✓ FilePathsBase 4006.9 ms ✓ DataStructures 3380.5 ms ✓ BioSymbols 3936.2 ms ✓ StringManipulation 15361.8 ms ✓ SIMD 14730.2 ms ✓ StaticArrays 17740.7 ms ✓ Parsers 2917.0 ms ✓ Libffi_jll 2659.4 ms ✓ Bzip2_jll 2660.2 ms ✓ XZ_jll 2708.5 ms ✓ NLopt_jll 2723.6 ms ✓ Rmath_jll 2336.6 ms ✓ OpenSpecFun_jll 1711.7 ms ✓ Xorg_xtrans_jll 2256.0 ms ✓ libpng_jll 2463.0 ms ✓ iso_codes_jll 1997.1 ms ✓ EpollShim_jll 2608.6 ms ✓ Wayland_protocols_jll 2626.5 ms ✓ Libmount_jll 2581.8 ms ✓ Libuuid_jll 2371.8 ms ✓ FriBidi_jll 2362.5 ms ✓ LERC_jll 2513.0 ms ✓ Git_LFS_jll 2716.8 ms ✓ libsass_jll 2428.3 ms ✓ Gumbo_jll 2222.1 ms ✓ Xorg_libXau_jll 2464.2 ms ✓ OpenSSH_jll 2301.1 ms ✓ hicolor_icon_theme_jll 2163.2 ms ✓ Graphite2_jll 2413.9 ms ✓ LLVMOpenMP_jll 2422.5 ms ✓ Libiconv_jll 2426.7 ms ✓ Xorg_libXdmcp_jll 2373.4 ms ✓ Expat_jll 2485.3 ms ✓ JpegTurbo_jll 1593.6 ms ✓ ColorTypes → StyledStringsExt 9131.2 ms ✓ Colors 823.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1407.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2927.9 ms ✓ FilePathsBase → FilePathsBaseTestExt 1286.2 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1607.0 ms ✓ SortingAlgorithms 2825.4 ms ✓ QuadGK 10332.9 ms ✓ BioSequences 42452.2 ms ✓ PrettyTables 17755.9 ms ✓ Automa 1760.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1852.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1902.5 ms ✓ FillArrays → FillArraysStaticArraysExt 1751.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1878.1 ms ✓ Adapt → AdaptStaticArraysExt 4293.2 ms ✓ JSON 1337.1 ms ✓ InlineStrings → ParsersExt 1430.9 ms ✓ CodecBzip2 2385.5 ms ✓ FreeType2_jll 2040.3 ms ✓ Rmath 6057.6 ms ✓ SpecialFunctions 2608.4 ms ✓ Sass 1606.1 ms ✓ Gumbo 2407.7 ms ✓ adwaita_icon_theme_jll 2324.0 ms ✓ Pixman_jll 2527.9 ms ✓ XML2_jll 2539.7 ms ✓ GettextRuntime_jll 2575.1 ms ✓ Xorg_libxcb_jll 2551.3 ms ✓ Git_jll 2652.8 ms ✓ Wayland_jll 2555.3 ms ✓ Libtiff_jll 1720.1 ms ✓ Graphics 11178.3 ms ✓ FlameGraphs 1429.1 ms ✓ FiniteDiff 5283.2 ms ✓ StatsBase 87322.3 ms ✓ DataFrames 20470.2 ms ✓ FASTX 9390.4 ms ✓ Documenter 3626.5 ms ✓ BenchmarkTools 2965.7 ms ✓ WeakRefStrings 2597.3 ms ✓ Fontconfig_jll 2735.6 ms ✓ HypergeometricFunctions 1390.7 ms ✓ DiffRules 2588.5 ms ✓ Glib_jll 2426.8 ms ✓ Xorg_libX11_jll 1420.7 ms ✓ Git 1833.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1798.7 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1060.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2557.3 ms ✓ FASTX → BioSequencesExt 27193.6 ms ✓ CSV 3289.9 ms ✓ StatsFuns 7361.1 ms ✓ ForwardDiff 2288.8 ms ✓ Graphene_jll 2310.6 ms ✓ Xorg_libXfixes_jll 2312.8 ms ✓ Xorg_libXrender_jll 2338.0 ms ✓ Xorg_libXext_jll 2345.0 ms ✓ Xorg_libxkbfile_jll 2392.2 ms ✓ gdk_pixbuf_jll 4526.0 ms ✓ DocumenterTools 5497.5 ms ✓ StatsModels 10813.0 ms ✓ Distributions 1983.7 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1768.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 104677.0 ms ✓ MathOptInterface 2345.1 ms ✓ Xorg_libXdamage_jll 2421.4 ms ✓ Xorg_libXcursor_jll 2338.5 ms ✓ Xorg_libXrandr_jll 2454.0 ms ✓ Xorg_libXinerama_jll 2502.4 ms ✓ Xorg_libXi_jll 2396.2 ms ✓ Cairo_jll 2508.0 ms ✓ Libglvnd_jll 2256.6 ms ✓ Xorg_xkbcomp_jll 6260.2 ms ✓ GLM 4243.6 ms ✓ Distributions → DistributionsTestExt 2273.3 ms ✓ NLSolversBase 10086.1 ms ✓ NLopt 2505.7 ms ✓ HarfBuzz_jll 2382.5 ms ✓ Libepoxy_jll 1699.0 ms ✓ Xorg_xkeyboard_config_jll 2886.3 ms ✓ LineSearches 34791.5 ms ✓ PhyloNetworks 2399.3 ms ✓ Pango_jll 2424.7 ms ✓ xkbcommon_jll 7560.6 ms ✓ Optim 3082.5 ms ✓ Cairo 2456.0 ms ✓ Librsvg_jll 2618.2 ms ✓ GTK4_jll 9553.8 ms ✓ Optim → OptimMOIExt 53075.3 ms ✓ Gtk4  (julia:872): Gtk-WARNING **: 04:49:25.971: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 27002.7 ms ✓ GtkObservables  (julia:881): Gtk-WARNING **: 04:50:01.498: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 18841.4 ms ✓ ProfileView 26644.3 ms ✓ PhyNEST 209 dependencies successfully precompiled in 975 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ ProfileView │ (julia:881): Gtk-WARNING **: 04:50:01.498: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ GtkObservables │ (julia:872): Gtk-WARNING **: 04:49:25.971: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 980.2s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_nCzcia/Project.toml` [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [429524aa] Optim v1.13.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.3 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_nCzcia/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.5.2 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.23.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.7.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.16 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.7 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.18.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.3 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.12 [8710efd8] GtkObservables v2.2.2 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.14 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.50.1 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.7.1 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [c46f51b8] ProfileView v1.10.3 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.4 [354b36f9] StringViews v1.3.7 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.6+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.14.3+1 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 ⌅ [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.53.0+0 [7746bdde] Glib_jll v2.86.3+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.5+0 [88015f11] LERC_jll v4.1.0+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [42c93a91] Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.42.0+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.42.0+0 [079eb43e] NLopt_jll v2.10.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [2381bf8a] Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.3+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.7+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.7+0 [ec84b674] Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.2.0+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b437f822] adwaita_icon_theme_jll v43.0.1+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [059c91fe] hicolor_icon_theme_jll v0.18.0+0 [bf975903] iso_codes_jll v4.20.1+0 [b53b4c65] libpng_jll v1.6.57+0 [47bcb7c8] libsass_jll v3.6.6+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.1+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.7s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.1s Test Summary: | Pass Total Time Testing Method-of-moment estimates of speciation times | 1500 1500 0.0s Testing PhyNEST tests passed Testing completed after 56.13s PkgEval succeeded after 1471.39s