Package evaluation to test HMMBase on Julia 1.14.0-DEV.2028 (45a2de3f7a*) started at 2026-04-12T20:09:14.309 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.65s ################################################################################ # Installation # Installing HMMBase... Resolving package versions... Installed Rmath_jll ─────────────── v0.5.1+0 Installed AbstractTrees ─────────── v0.4.5 Installed FillArrays ────────────── v1.16.0 Installed HypergeometricFunctions ─ v0.3.28 Installed AliasTables ───────────── v1.1.3 Installed DataStructures ────────── v0.18.22 Installed Hungarian ─────────────── v0.6.0 Installed OrderedCollections ────── v1.8.1 Installed StatsBase ─────────────── v0.33.21 Installed Compat ────────────────── v4.18.1 Installed DataAPI ───────────────── v1.16.0 Installed StatsAPI ──────────────── v1.8.0 Installed Statistics ────────────── v1.11.1 Installed HMMBase ───────────────── v1.0.7 Installed NearestNeighbors ──────── v0.4.27 Installed ArgCheck ──────────────── v2.5.0 Installed Distances ─────────────── v0.10.12 Installed StaticArraysCore ──────── v1.4.4 Installed IrrationalConstants ───── v0.2.6 Installed PrecompileTools ───────── v1.3.3 Installed StaticArrays ──────────── v1.9.18 Installed Clustering ────────────── v0.14.4 Installed QuadGK ────────────────── v2.11.3 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed Rmath ─────────────────── v0.9.0 Installed StatsFuns ─────────────── v1.5.2 Installed LogExpFunctions ───────── v0.3.29 Installed PtrArrays ─────────────── v1.4.0 Installed Reexport ──────────────── v1.2.2 Installed SpecialFunctions ──────── v2.7.2 Installed Distributions ─────────── v0.25.123 Installed Missings ──────────────── v1.2.0 Installed PDMats ────────────────── v0.11.35 Installed JLLWrappers ───────────── v1.7.1 Installed DocStringExtensions ───── v0.9.5 Installed Preferences ───────────── v1.5.2 Installed SortingAlgorithms ─────── v1.2.2 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [b2b3ca75] + HMMBase v1.0.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 ⌅ [aaaa29a8] + Clustering v0.14.4 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [b2b3ca75] + HMMBase v1.0.7 ⌅ [e91730f6] + Hungarian v0.6.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.27 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.67s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5024.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 979.3 ms ✓ Reexport 1417.7 ms ✓ Statistics 918.2 ms ✓ DataAPI 2213.2 ms ✓ IrrationalConstants 1014.1 ms ✓ StaticArraysCore 904.8 ms ✓ StatsAPI 1405.5 ms ✓ OrderedCollections 1216.6 ms ✓ DocStringExtensions 1304.5 ms ✓ AbstractTrees 977.8 ms ✓ ArgCheck 2321.4 ms ✓ FillArrays 875.6 ms ✓ PtrArrays 2020.3 ms ✓ PDMats 1540.9 ms ✓ Hungarian 2008.8 ms ✓ StructUtils 1257.1 ms ✓ Compat 1647.0 ms ✓ Preferences 1515.5 ms ✓ Statistics → SparseArraysExt 1057.7 ms ✓ Missings 1571.3 ms ✓ Distances 1774.3 ms ✓ LogExpFunctions 1733.4 ms ✓ FillArrays → FillArraysSparseArraysExt 1187.8 ms ✓ FillArrays → FillArraysStatisticsExt 989.0 ms ✓ AliasTables 1615.4 ms ✓ FillArrays → FillArraysPDMatsExt 1227.2 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 912.4 ms ✓ Compat → CompatLinearAlgebraExt 1568.3 ms ✓ JLLWrappers 1271.8 ms ✓ PrecompileTools 1479.3 ms ✓ Distances → DistancesSparseArraysExt 4036.3 ms ✓ DataStructures 2367.1 ms ✓ Rmath_jll 2348.9 ms ✓ OpenSpecFun_jll 15184.0 ms ✓ StaticArrays 18309.9 ms ✓ Parsers 1711.5 ms ✓ SortingAlgorithms 3025.0 ms ✓ QuadGK 1982.1 ms ✓ Rmath 6080.1 ms ✓ SpecialFunctions 1838.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 2042.8 ms ✓ FillArrays → FillArraysStaticArraysExt 8676.1 ms ✓ JSON 5158.3 ms ✓ StatsBase 2617.2 ms ✓ HypergeometricFunctions 8953.4 ms ✓ NearestNeighbors 3396.9 ms ✓ StatsFuns 5290.2 ms ✓ Clustering 10873.9 ms ✓ Distributions 4295.9 ms ✓ Distributions → DistributionsTestExt 6019.5 ms ✓ HMMBase 50 dependencies successfully precompiled in 156 seconds. 17 already precompiled. Precompilation completed after 187.43s ################################################################################ # Testing # Testing HMMBase Status `/tmp/jl_WFzxM2/Project.toml` [dce04be8] ArgCheck v2.5.0 ⌅ [aaaa29a8] Clustering v0.14.4 [31c24e10] Distributions v0.25.123 [b2b3ca75] HMMBase v1.0.7 ⌅ [e91730f6] Hungarian v0.6.0 [682c06a0] JSON v1.5.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WFzxM2/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 ⌅ [aaaa29a8] Clustering v0.14.4 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [b2b3ca75] HMMBase v1.0.7 ⌅ [e91730f6] Hungarian v0.6.0 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.5.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.27 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [ec057cc2] StructUtils v2.7.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: `MvNormal(μ::AbstractVector{<:Real}, σ::AbstractVector{<:Real})` is deprecated, use `MvNormal(μ, LinearAlgebra.Diagonal(map(abs2, σ)))` instead. │ caller = ip:0x0 └ @ Core :-1 Test Summary: | Pass Total Time Base | 4 4 7.5s Test Summary: | Pass Total Time Base (2) | 5 5 1.8s Test Summary: | Pass Total Time Base (3) | 4 4 0.8s Test Summary: | Pass Total Time Base (4) | 10 10 3.6s Test Summary: | Pass Total Time Base (5) | 1 1 1.7s Test Summary: | Pass Total Time Constructors | 6 6 2.1s Test Summary: | Pass Total Time Stationnary Distributions | 6 6 9.9s Test Summary: | Pass Total Time Messages (1) | 4 4 3.2s Test Summary: | Pass Broken Total Time Messages (3) | 4 2 6 1.8s Test Summary: | Pass Total Time Viterbi | 1 1 0.0s Test Summary: | Pass Total Time MLE | 4 4 5.8s Test Summary: | Pass Total Time Utilities (1) | 8 8 0.7s Test Summary: | Pass Total Time Utilities (2) | 2 2 7.5s Test Summary: | Pass Total Time Reproducibility | 4 4 1.1s Experimental: Error During Test at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/unit.jl:294 Got exception outside of a @test UndefVarError: `json` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/HMMBase/ZYC4P/test/unit.jl:296 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/HMMBase/ZYC4P/test/unit.jl:297 [inlined] [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [5] top-level scope @ ~/.julia/packages/HMMBase/ZYC4P/test/runtests.jl:2 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:517 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [10] _start() @ Base ./client.jl:593 Test Summary: | Error Total Time Experimental | 1 1 2.4s RNG of the outermost testset: Xoshiro(0xcb82d87b3279db46, 0x5b02822dab8f4a3f, 0x570b36e900712aba, 0x7b378b16d870c1e6, 0xee473f312272dcef) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/unit.jl:294 in expression starting at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/runtests.jl:2 Testing failed after 73.75s ERROR: LoadError: Package HMMBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3160 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [14] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 306.4s: package tests unexpectedly errored