Package evaluation to test FlxQTL on Julia 1.14.0-DEV.1918 (78a0dc1151*) started at 2026-03-19T20:23:51.058 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.34s ################################################################################ # Installation # Installing FlxQTL... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [ede81e08] + FlxQTL v4.0.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [ede81e08] + FlxQTL v4.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [30fc2ffe] + LossFunctions v1.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 6.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 4440.1 ms ✓ LossFunctions 13413.1 ms ✓ FlxQTL 2 dependencies successfully precompiled in 19 seconds. 56 already precompiled. Precompilation completed after 38.97s ################################################################################ # Testing # Testing FlxQTL Status `/tmp/jl_09j68Z/Project.toml` [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ede81e08] FlxQTL v4.0.2 [30fc2ffe] LossFunctions v1.2.0 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_09j68Z/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [ede81e08] FlxQTL v4.0.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [30fc2ffe] LossFunctions v1.2.0 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... rand(Random.Xoshiro(seed + myid())) = 0.02903627120676744 From worker 3: rand(Random.Xoshiro(seed + myid())) = 0.6140724580776808 From worker 4: rand(Random.Xoshiro(seed + myid())) = 0.8943305188090829 From worker 5: rand(Random.Xoshiro(seed + myid())) = 0.5261301753598052 From worker 2: rand(Random.Xoshiro(seed + myid())) = 0.2293019828841396 Positive definiteness dropping chromosome 1 is true. Positive definiteness dropping chromosome 2 is true. Test Passed Test Passed Kinship dropping chromosome 1 is corrected to be positive definite:true Kinship dropping chromosome 2 is corrected to be positive definite:true Test Passed Test Passed Kinship dropping chromosome 1 is corrected to be positive definite:true Kinship dropping chromosome 2 is corrected to be positive definite:true Test Passed Test Passed Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedKinship dropping chromosome 1 is corrected to be positive definite:false Kinship dropping chromosome 2 is corrected to be positive definite:false Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed From worker 5: From worker 5: ====================================================================================== From worker 5: Information request received. A stacktrace will print followed by a 1.0 second profile. From worker 5: --trace-compile is enabled during profile collection. From worker 5: ====================================================================================== From worker 5: From worker 5: cmd: /opt/julia/bin/julia 27 running 0 of 1 From worker 5: From worker 5: signal (10): User defined signal 1 From worker 5: epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 5: uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 From worker 5: uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 From worker 5: ijl_task_get_next at /source/src/scheduler.c:457 From worker 5: wait at ./task.jl:1246 From worker 5: wait_forever at ./task.jl:1168 From worker 5: jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) From worker 5: _jl_invoke at /source/src/gf.c:4113 [inlined] From worker 5: ijl_apply_generic at /source/src/gf.c:4339 From worker 5: jl_apply at /source/src/julia.h:2300 [inlined] From worker 5: start_task at /source/src/task.c:1275 From worker 5: unknown function (ip: (nil)) at (unknown file) From worker 5: From worker 5: From worker 5: ============================================================== From worker 5: Profile collected. A report will print at the next yield point. From worker 5: Disabling --trace-compile From worker 5: ============================================================== From worker 5: From worker 3: From worker 3: ====================================================================================== From worker 3: Information request received. A stacktrace will print followed by a 1.0 second profile. From worker 3: --trace-compile is enabled during profile collection. From worker 3: ====================================================================================== From worker 3: From worker 3: cmd: /opt/julia/bin/julia 25 running 0 of 1 From worker 3: From worker 3: signal (10): User defined signal 1 From worker 3: epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 3: uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 From worker 3: uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 From worker 3: ijl_task_get_next at /source/src/scheduler.c:457 From worker 3: wait at ./task.jl:1246 From worker 3: wait_forever at ./task.jl:1168 From worker 3: jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) From worker 3: _jl_invoke at /source/src/gf.c:4113 [inlined] From worker 3: ijl_apply_generic at /source/src/gf.c:4339 From worker 3: jl_apply at /source/src/julia.h:2300 [inlined] From worker 3: start_task at /source/src/task.c:1275 From worker 3: unknown function (ip: (nil)) at (unknown file) From worker 3: From worker 3: From worker 3: ============================================================== From worker 3: Profile collected. A report will print at the next yield point. From worker 3: Disabling --trace-compile From worker 3: ============================================================== From worker 3: From worker 4: From worker 4: ====================================================================================== From worker 4: Information request received. A stacktrace will print followed by a 1.0 second profile. From worker 4: --trace-compile is enabled during profile collection. From worker 4: ====================================================================================== From worker 4: From worker 4: cmd: /opt/julia/bin/julia 26 running 0 of 1 From worker 4: From worker 4: signal (10): User defined signal 1 From worker 4: epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 4: uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 From worker 4: uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 From worker 4: ijl_task_get_next at /source/src/scheduler.c:457 From worker 4: wait at ./task.jl:1246 From worker 4: wait_forever at ./task.jl:1168 From worker 4: jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) From worker 4: _jl_invoke at /source/src/gf.c:4113 [inlined] From worker 4: ijl_apply_generic at /source/src/gf.c:4339 From worker 4: jl_apply at /source/src/julia.h:2300 [inlined] From worker 4: start_task at /source/src/task.c:1275 From worker 4: unknown function (ip: (nil)) at (unknown file) From worker 4: From worker 4: From worker 4: ============================================================== From worker 4: Profile collected. A report will print at the next yield point. From worker 4: Disabling --trace-compile From worker 4: ============================================================== From worker 4: From worker 2: From worker 2: ====================================================================================== From worker 2: Information request received. A stacktrace will print followed by a 1.0 second profile. From worker 2: --trace-compile is enabled during profile collection. From worker 2: ====================================================================================== From worker 2: From worker 2: cmd: /opt/julia/bin/julia 22 running 1 of 1 From worker 2: From worker 2: signal (10): User defined signal 1 From worker 2: jl_gc_small_alloc_inner at /source/src/gc-stock.c:750 From worker 2: ijl_gc_small_alloc at /source/src/gc-stock.c:783 From worker 2: Array at ./boot.jl:715 [inlined] From worker 2: Array at ./boot.jl:727 [inlined] From worker 2: similar at ./array.jl:407 [inlined] From worker 2: similar at ./abstractarray.jl:823 [inlined] From worker 2: #getrf!#5 at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lapack.jl:787 [inlined] From worker 2: getrf! at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lapack.jl:787 [inlined] From worker 2: #lu!#181 at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:91 [inlined] From worker 2: lu! at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:90 [inlined] From worker 2: #lu!#180 at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:89 [inlined] From worker 2: lu! at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:89 [inlined] From worker 2: #_lu#192 at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:405 [inlined] From worker 2: _lu at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:405 [inlined] From worker 2: #lu#189 at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:399 From worker 2: lu at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/lu.jl:399 [inlined] From worker 2: \ at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1241 From worker 2: fixVar! at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:88 From worker 2: eStep! at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:176 From worker 2: fullECM at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:632 From worker 2: #NestrvAG#12 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:716 From worker 2: NestrvAG at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:700 [inlined] From worker 2: #ecmNestrvAG#14 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:792 [inlined] From worker 2: ecmNestrvAG at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:788 [inlined] From worker 2: macro expansion at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/geneScan2D.jl:63 [inlined] From worker 2: #49 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:291 From worker 2: unknown function (ip: 0x74cc19461e14) at (unknown file) From worker 2: _jl_invoke at /source/src/gf.c:4113 [inlined] From worker 2: ijl_apply_generic at /source/src/gf.c:4339 From worker 2: jl_apply at /source/src/julia.h:2300 [inlined] From worker 2: jl_f_invokelatest at /source/src/builtins.c:910 From worker 2: _jl_invoke at /source/src/gf.c:4113 [inlined] From worker 2: ijl_apply_generic at /source/src/gf.c:4339 From worker 2: jl_apply at /source/src/julia.h:2300 [inlined] From worker 2: jl_f__apply_iterate at /source/src/builtins.c:897 From worker 2: #handle_msg##4 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:287 From worker 2: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70 From worker 2: #handle_msg##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:287 From worker 2: unknown function (ip: 0x74cc37746f79) at (unknown file) From worker 2: _jl_invoke at /source/src/gf.c:4113 [inlined] From worker 2: ijl_apply_generic at /source/src/gf.c:4339 From worker 2: jl_apply at /source/src/julia.h:2300 [inlined] From worker 2: start_task at /source/src/task.c:1275 From worker 2: unknown function (ip: (nil)) at (unknown file) From worker 2: From worker 2: From worker 2: ============================================================== From worker 2: Profile collected. A report will print at the next yield point. From worker 2: Disabling --trace-compile From worker 2: ============================================================== From worker 2: Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 19 running 1 of 1 signal (10): User defined signal 1 macro expansion at ./cartesian.jl:67 [inlined] _unsafe_setindex! at ./multidimensional.jl:1048 _setindex! at ./multidimensional.jl:1036 [inlined] setindex! at ./abstractarray.jl:1457 [inlined] fixVar! at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:88 eStep! at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:198 fullECM at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PEcmNestrv.jl:259 #ecmLMM#25 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PEcmNestrv.jl:305 ecmLMM at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PEcmNestrv.jl:292 [inlined] #nul1Scan#74 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:139 nul1Scan at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:134 [inlined] #getKc#75 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:156 [inlined] getKc at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:149 [inlined] #geneScan2#95 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:101 geneScan2 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:78 [inlined] #gene2Scan#97 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:261 [inlined] gene2Scan at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:251 unknown function (ip: 0x7549b01bd814) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7549c8703a62) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7549c8703a62) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7549d1b57249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== [19] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/FlxQTL/sdovl/test/scantest1.jl:213 gc_sweep_page at /source/src/gc-stock.c:926 gc_sweep_pool_page at /source/src/gc-stock.c:996 [inlined] gc_sweep_pool_parallel at /source/src/gc-stock.c:1292 gc_sweep_pool at /source/src/gc-stock.c:1416 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3215 ijl_gc_collect at /source/src/gc-stock.c:3523 maybe_collect at /source/src/gc-stock.c:357 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:734 ijl_gc_small_alloc at /source/src/gc-stock.c:783 Array at ./boot.jl:718 [inlined] Array at ./boot.jl:728 [inlined] similar at ./array.jl:407 [inlined] similar at ./abstractarray.jl:832 [inlined] _similar_for at ./array.jl:695 [inlined] _collect at ./array.jl:853 collect_similar at ./array.jl:763 [inlined] map at ./abstractarray.jl:3386 [inlined] _broadcast_preserving_zero_d at ./arraymath.jl:32 [inlined] * at ./arraymath.jl:54 [inlined] mul_fast at ./fastmath.jl:272 [inlined] Loglik at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/EcmNestrv.jl:371 fullECM at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PEcmNestrv.jl:262 #ecmLMM#25 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PEcmNestrv.jl:305 ecmLMM at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PEcmNestrv.jl:292 [inlined] #nul1Scan#74 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:139 nul1Scan at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:134 [inlined] #getKc#75 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:156 [inlined] getKc at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan1D.jl:149 [inlined] #geneScan2#95 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:101 geneScan2 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:78 [inlined] #gene2Scan#97 at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:261 [inlined] gene2Scan at /home/pkgeval/.julia/packages/FlxQTL/sdovl/src/PgeneScan2D.jl:251 unknown function (ip: 0x7549b01bd814) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7549c8703a62) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7549c8703a62) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7549d1b57249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 3859770856 (Pool: 3859769405; Big: 1451); GC: 19550 PkgEval terminated after 2769.98s: test duration exceeded the time limit