Package evaluation to test PeriodicHiddenMarkovModels on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T15:48:36.438


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 13.96s


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# Installation
#

Installing PeriodicHiddenMarkovModels...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [4873b48c] + PeriodicHiddenMarkovModels v0.2.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [dce04be8] + ArgCheck v2.5.0
  [d360d2e6] + ChainRulesCore v1.26.0
  [34da2185] + Compat v4.18.1
  [b429d917] + DensityInterface v0.4.0
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.16.0
⌅ [84ca31d5] + HiddenMarkovModels v0.5.4
  [34004b35] + HypergeometricFunctions v0.3.28
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [4873b48c] + PeriodicHiddenMarkovModels v0.2.0
  [21216c6a] + Preferences v1.5.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [276daf66] + SpecialFunctions v2.7.1
  [82ae8749] + StatsAPI v1.8.0
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.71s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   4649.0 ms  ✓ HiddenMarkovModels
   3629.4 ms  ✓ Distributions → DistributionsDensityInterfaceExt
   3752.6 ms  ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt
   4029.3 ms  ✓ PeriodicHiddenMarkovModels
  4 dependencies successfully precompiled in 17 seconds. 65 already precompiled.
  9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 30 dependents of these packages may trigger further precompilation to work with the unexpected versions.

Precompilation completed after 41.07s


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# Testing
#

     Testing PeriodicHiddenMarkovModels
      Status `/tmp/jl_4vn1TT/Project.toml`
  [31c24e10] Distributions v0.25.123
⌅ [84ca31d5] HiddenMarkovModels v0.5.4
  [4873b48c] PeriodicHiddenMarkovModels v0.2.0
  [860ef19b] StableRNGs v1.0.4
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_4vn1TT/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
  [d360d2e6] ChainRulesCore v1.26.0
  [34da2185] Compat v4.18.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.3
  [b429d917] DensityInterface v0.4.0
  [31c24e10] Distributions v0.25.123
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.16.0
⌅ [84ca31d5] HiddenMarkovModels v0.5.4
  [34004b35] HypergeometricFunctions v0.3.28
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.37
  [4873b48c] PeriodicHiddenMarkovModels v0.2.0
  [21216c6a] Preferences v1.5.2
  [43287f4e] PtrArrays v1.4.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.7.1
  [860ef19b] StableRNGs v1.0.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.10
  [4c63d2b9] StatsFuns v1.5.2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.30+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...

Comparing with HiddenMarkovModels.jl in trivial case T = 1 (homogeneous): Error During Test at /home/pkgeval/.julia/packages/PeriodicHiddenMarkovModels/dkyMt/test/runtests.jl:8
  Got exception outside of a @test
  TypeError: in keyword argument seq_ends, expected AbstractVector{Int64}, got a value of type Tuple{Int64}
  Stacktrace:
    [1] kwcall(::@NamedTuple{seq_ends::Tuple{Int64}}, ::typeof(fit!), hmm::PeriodicHMM{Float64, Distribution{Univariate, Continuous}, 1, Vector{Float64}, SubArray{Float64, 2, Array{Float64, 3}, Tuple{Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Int64}, true}, SubArray{Distribution{Univariate, Continuous}, 1, Matrix{Distribution{Univariate, Continuous}}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}}, fb_storage::HiddenMarkovModels.ForwardBackwardStorage{Float64, Matrix{Float64}}, obs_seq::Vector{Float64}, n2t::Vector{Int64})
      @ PeriodicHiddenMarkovModels ~/.julia/packages/PeriodicHiddenMarkovModels/dkyMt/src/fit.jl:1
    [2] baum_welch!(fb_storage::HiddenMarkovModels.ForwardBackwardStorage{Float64, Matrix{Float64}}, logL_evolution::Vector{Float64}, hmm::PeriodicHMM{Float64, Distribution{Univariate, Continuous}, 1, Vector{Float64}, SubArray{Float64, 2, Array{Float64, 3}, Tuple{Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Int64}, true}, SubArray{Distribution{Univariate, Continuous}, 1, Matrix{Distribution{Univariate, Continuous}}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}}, obs_seq::Vector{Float64}, control_seq::Vector{Int64}; seq_ends::Tuple{Int64}, atol::Float64, max_iterations::Int64, loglikelihood_increasing::Bool)
      @ HiddenMarkovModels ~/.julia/packages/HiddenMarkovModels/TAbNC/src/inference/baum_welch.jl:33
    [3] kwcall(::@NamedTuple{seq_ends::Tuple{Int64}, atol::Float64, max_iterations::Int64, loglikelihood_increasing::Bool}, ::typeof(HiddenMarkovModels.baum_welch!), fb_storage::HiddenMarkovModels.ForwardBackwardStorage{Float64, Matrix{Float64}}, logL_evolution::Vector{Float64}, hmm::PeriodicHMM{Float64, Distribution{Univariate, Continuous}, 1, Vector{Float64}, SubArray{Float64, 2, Array{Float64, 3}, Tuple{Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Int64}, true}, SubArray{Distribution{Univariate, Continuous}, 1, Matrix{Distribution{Univariate, Continuous}}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}}, obs_seq::Vector{Float64}, control_seq::Vector{Int64})
      @ HiddenMarkovModels ~/.julia/packages/HiddenMarkovModels/TAbNC/src/inference/baum_welch.jl:19
    [4] baum_welch(hmm_guess::PeriodicHMM{Float64, Distribution{Univariate, Continuous}, 1, Vector{Float64}, SubArray{Float64, 2, Array{Float64, 3}, Tuple{Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Int64}, true}, SubArray{Distribution{Univariate, Continuous}, 1, Matrix{Distribution{Univariate, Continuous}}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}}, obs_seq::Vector{Float64}, control_seq::Vector{Int64}; seq_ends::Tuple{Int64}, atol::Float64, max_iterations::Int64, loglikelihood_increasing::Bool)
      @ HiddenMarkovModels ~/.julia/packages/HiddenMarkovModels/TAbNC/src/inference/baum_welch.jl:67
    [5] baum_welch(hmm_guess::PeriodicHMM{Float64, Distribution{Univariate, Continuous}, 1, Vector{Float64}, SubArray{Float64, 2, Array{Float64, 3}, Tuple{Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Int64}, true}, SubArray{Distribution{Univariate, Continuous}, 1, Matrix{Distribution{Univariate, Continuous}}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}}, obs_seq::Vector{Float64}, control_seq::Vector{Int64})
      @ HiddenMarkovModels ~/.julia/packages/HiddenMarkovModels/TAbNC/src/inference/baum_welch.jl:54
    [6] top-level scope
      @ ~/.julia/packages/PeriodicHiddenMarkovModels/dkyMt/test/runtests.jl:9
    [7] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined]
    [8] macro expansion
      @ ~/.julia/packages/PeriodicHiddenMarkovModels/dkyMt/test/runtests.jl:55 [inlined]
    [9] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:324
   [10] top-level scope
      @ none:6
   [11] eval(m::Module, e::Any)
      @ Core ./boot.jl:517
   [12] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:310
   [13] _start()
      @ Base ./client.jl:585
Test Summary:                                                            | Error  Total   Time
Comparing with HiddenMarkovModels.jl in trivial case T = 1 (homogeneous) |     1      1  17.1s
RNG of the outermost testset: Xoshiro(0xadd5fc0699fb008e, 0x1397afb6d9465e95, 0x611eec627e9beb17, 0x9c356e51151ff918, 0x13adad4f32b98368)
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/PeriodicHiddenMarkovModels/dkyMt/test/runtests.jl:8

Testing failed after 37.54s

ERROR: LoadError: Package PeriodicHiddenMarkovModels errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:323
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 115.62s: package tests unexpectedly errored