Package evaluation to test PEtabTraining on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-16T03:31:46.483 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.19s ################################################################################ # Installation # Installing PEtabTraining... Resolving package versions... Installed PEtabTraining ─ v0.1.1 Updating `~/.julia/environments/v1.14/Project.toml` [ed36266e] + PEtabTraining v0.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [6e696c72] + AbstractPlutoDingetjes v1.3.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.23.0 [4c555306] + ArrayLayouts v1.12.2 [e2ed5e7c] + Bijections v0.2.2 [caf10ac8] + BipartiteGraphs v0.1.7 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.11.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [479239e8] + Catalyst v16.0.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b0b7db55] + ComponentArrays v0.15.32 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.210.1 [459566f4] + DiffEqCallbacks v4.12.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [8d63f2c5] + DispatchDoctor v0.4.28 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.4 [06fc5a27] + DynamicQuantities v1.12.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.18 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.8.0 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.14.0 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [3263718b] + ImplicitDiscreteSolve v1.8.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.23.1 [ba0b0d4f] + Krylov v0.10.6 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [73f95e8e] + LatticeRules v0.0.1 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.6 [7ed4a6bd] + LinearSolve v3.65.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [7771a370] + ModelingToolkitBase v1.23.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.14 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.16.0 [be0214bd] + NonlinearSolveBase v2.15.0 [5959db7a] + NonlinearSolveFirstOrder v2.0.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [6ad6398a] + OrdinaryDiffEqBDF v1.22.0 [bbf590c4] + OrdinaryDiffEqCore v3.18.0 [4302a76b] + OrdinaryDiffEqDifferentiation v2.2.1 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.23.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.25.0 [2d112036] + OrdinaryDiffEqSDIRK v1.12.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.9.0 [90014a1f] + PDMats v0.11.37 [48d54b35] + PEtab v5.0.0 [ed36266e] + PEtabTraining v0.1.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [d236fae5] + PreallocationTools v1.1.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.2.3 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [8a4e6c94] + QuasiMonteCarlo v0.3.5 [988b38a3] + ReadOnlyArrays v0.2.0 [795d4caa] + ReadOnlyDicts v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.48.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [37e2e3b7] + ReverseDiff v1.16.2 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v4.0.0 [9dfe8606] + SCCNonlinearSolve v1.11.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.149.0 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.15.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.11.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.24 [276daf66] + SpecialFunctions v2.7.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.9.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.4 [c3572dad] + Sundials v5.1.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [19f23fe9] + SymbolicLimits v1.1.0 [d1185830] + SymbolicUtils v4.20.1 [0c5d862f] + Symbolics v7.15.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [d30d5f5c] + WeakCacheSets v0.1.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.16 [61579ee1] + Ghostscript_jll v9.55.1+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.13.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.5+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [fe0851c0] + OpenMPI_jll v5.0.10+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.21.0+0 [ca45d3f4] + SuiteSparse32_jll v7.12.1+0 [fb77eaff] + Sundials_jll v7.5.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+1 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 10897.0 ms ✓ NonlinearSolve → NonlinearSolveSundialsExt 147886.1 ms ✓ SBMLImporter 86826.8 ms ✓ SBMLImporter → SBMLImporterForwardDiffExt 423763.5 ms ✓ PEtab 169217.9 ms ✓ PEtab → PEtabLuxExtension 156879.1 ms ✓ PEtabTraining 6 dependencies successfully precompiled in 1001 seconds. 438 already precompiled. 26 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, PCRE2_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, Zstd_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 306 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 1027.68s ################################################################################ # Testing # Testing PEtabTraining Status `/tmp/jl_OknRqS/Project.toml` [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [336ed68f] CSV v0.10.16 [479239e8] Catalyst v16.0.0 [b0b7db55] ComponentArrays v0.15.32 [a93c6f00] DataFrames v1.8.1 [b2108857] Lux v1.31.3 [43230ef6] OrdinaryDiffEqRosenbrock v1.25.0 [48d54b35] PEtab v5.0.0 [ed36266e] PEtabTraining v0.1.1 [1bc83da4] SafeTestsets v0.1.0 [ce78b400] SimpleUnPack v1.1.0 [2913bbd2] StatsBase v0.34.10 [fd094767] Suppressor v0.2.8 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_OknRqS/Manifest.toml` [47edcb42] ADTypes v1.21.0 [6e696c72] AbstractPlutoDingetjes v1.3.2 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.23.0 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.2 [e2ed5e7c] Bijections v0.2.2 [caf10ac8] BipartiteGraphs v0.1.7 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.11.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [479239e8] Catalyst v16.0.0 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b0b7db55] ComponentArrays v0.15.32 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.210.1 [459566f4] DiffEqCallbacks v4.12.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [8d63f2c5] DispatchDoctor v0.4.28 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [7c1d4256] DynamicPolynomials v0.6.4 [06fc5a27] DynamicQuantities v1.12.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.18 [e2ba6199] ExprTools v0.1.10 [21656369] ExpressionExplorer v1.1.4 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [64ca27bc] FindFirstFunctions v1.8.0 [6a86dc24] FiniteDiff v2.29.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 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Testing Running tests... Test Summary: | Pass Total Time Aqua | 10 10 15m20.0s Uniform splitting time: Error During Test at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:89 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/Boehm_JProteomeRes2014/measurementData_Boehm_JProteomeRes2014.tsv": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:188 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:390 [5] open(fname::String, mode::String) @ Base ./iostream.jl:389 [6] with(f::CSV.var"#90#91"{Bool, Bool, Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, DataFrames.DataFrameRows{DataFrames.DataFrame}, CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}, Vector{UInt8}, Int64, Int64, NTuple{8, Symbol}}, io::Any, append::Bool, compress::Bool) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:287 [7] #write#88 @ ~/.julia/packages/CSV/LiiJM/src/write.jl:215 [inlined] [8] kwcall(::@NamedTuple{append::Bool, compress::Bool, header::Bool, delim::Char}, ::typeof(CSV.write), sch::Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, rows::DataFrames.DataFrameRows{DataFrames.DataFrame}, file::String, opts::CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:203 [9] write(file::String, itr::DataFrames.DataFrame; append::Bool, compress::Bool, writeheader::Nothing, partition::Bool, kw::@Kwargs{delim::Char}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:199 [10] write @ ~/.julia/packages/CSV/LiiJM/src/write.jl:162 [inlined] [11] test_nllh(model_id::String, measurements_df::DataFrames.DataFrame, measurements_df_tmp::DataFrames.DataFrame, prob_original::PEtab.PEtabODEProblem{PEtab.var"#_get_nllh##0#_get_nllh##1"{PEtab.var"#_get_nllh##2#_get_nllh##3"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo, Bool, PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}, 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PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}}}, PEtab.ModelInfo}, PEtab.var"#_get_prior##4#_get_prior##5"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}}}}) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/common.jl:19 [12] test_split_uniform_time(model_id::String, n_chunks::Int64) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:16 [13] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:91 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:90 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:89 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [19] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:10 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [21] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:10 [inlined] [22] eval(m::Module, e::Any) @ Core ./boot.jl:517 [23] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:28 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:517 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 Custom time: Error During Test at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:107 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/Boehm_JProteomeRes2014/measurementData_Boehm_JProteomeRes2014.tsv": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:188 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:390 [5] open(fname::String, mode::String) @ Base ./iostream.jl:389 [6] with(f::CSV.var"#90#91"{Bool, Bool, Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, DataFrames.DataFrameRows{DataFrames.DataFrame}, CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}, Vector{UInt8}, Int64, Int64, NTuple{8, Symbol}}, io::Any, append::Bool, compress::Bool) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:287 [7] #write#88 @ ~/.julia/packages/CSV/LiiJM/src/write.jl:215 [inlined] [8] kwcall(::@NamedTuple{append::Bool, compress::Bool, header::Bool, delim::Char}, ::typeof(CSV.write), sch::Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, rows::DataFrames.DataFrameRows{DataFrames.DataFrame}, file::String, opts::CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:203 [9] write(file::String, itr::DataFrames.DataFrame; append::Bool, compress::Bool, writeheader::Nothing, partition::Bool, kw::@Kwargs{delim::Char}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:199 [10] write @ ~/.julia/packages/CSV/LiiJM/src/write.jl:162 [inlined] [11] 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PEtabTraining.var"#_get_hess!##0#_get_hess!##1"{Vector{Int64}, Vector{Int64}, PEtab.PEtabODEProblem{PEtab.var"#_get_nllh##0#_get_nllh##1"{PEtab.var"#_get_nllh##2#_get_nllh##3"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo, Bool, PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}, PEtab.var"#_get_grad##0#_get_grad##1"{PEtab.var"#_get_grad##2#_get_grad##3"{PEtab.var"#_get_grad_forward_AD##0#_get_grad_forward_AD##1"{PEtab.var"#298#299"{Bool, Bool, Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, ForwardDiff.GradientConfig{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6}}}, PEtab.ModelInfo, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}}, PEtab.var"#_get_prior##2#_get_prior##3"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}, PEtab.var"#262#263"{PEtab.var"#264#265"{Bool, PEtab.var"#_get_hess_forward_AD##2#_get_hess_forward_AD##3"{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, ForwardDiff.HessianConfig{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}, 9}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}}}, PEtab.ModelInfo}, PEtab.var"#_get_prior##4#_get_prior##5"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}}}}) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/common.jl:19 [12] test_split_custom_time(model_id::String, time_split::Vector{Float64}) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:50 [13] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:110 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:108 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:89 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [19] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:10 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [21] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:10 [inlined] [22] eval(m::Module, e::Any) @ Core ./boot.jl:517 [23] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:28 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:517 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 Uniform splitting data-points: Error During Test at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:118 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/Boehm_JProteomeRes2014/measurementData_Boehm_JProteomeRes2014.tsv": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:188 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:390 [5] open(fname::String, mode::String) @ Base ./iostream.jl:389 [6] with(f::CSV.var"#90#91"{Bool, Bool, Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, DataFrames.DataFrameRows{DataFrames.DataFrame}, CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}, Vector{UInt8}, Int64, Int64, NTuple{8, Symbol}}, io::Any, append::Bool, compress::Bool) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:287 [7] #write#88 @ ~/.julia/packages/CSV/LiiJM/src/write.jl:215 [inlined] [8] kwcall(::@NamedTuple{append::Bool, compress::Bool, header::Bool, delim::Char}, ::typeof(CSV.write), sch::Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, rows::DataFrames.DataFrameRows{DataFrames.DataFrame}, file::String, opts::CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:203 [9] write(file::String, itr::DataFrames.DataFrame; append::Bool, compress::Bool, writeheader::Nothing, partition::Bool, kw::@Kwargs{delim::Char}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:199 [10] write @ ~/.julia/packages/CSV/LiiJM/src/write.jl:162 [inlined] [11] test_nllh(model_id::String, measurements_df::DataFrames.DataFrame, measurements_df_tmp::DataFrames.DataFrame, prob_original::PEtab.PEtabODEProblem{PEtab.var"#_get_nllh##0#_get_nllh##1"{PEtab.var"#_get_nllh##2#_get_nllh##3"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo, Bool, PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}, PEtab.var"#_get_grad##0#_get_grad##1"{PEtab.var"#_get_grad##2#_get_grad##3"{PEtab.var"#_get_grad_forward_AD##0#_get_grad_forward_AD##1"{PEtab.var"#298#299"{Bool, Bool, Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, ForwardDiff.GradientConfig{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6}}}, PEtab.ModelInfo, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}}, PEtab.var"#_get_prior##2#_get_prior##3"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}, PEtab.var"#262#263"{PEtab.var"#264#265"{Bool, PEtab.var"#_get_hess_forward_AD##2#_get_hess_forward_AD##3"{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, ForwardDiff.HessianConfig{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}, 9}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}}}, PEtab.ModelInfo}, PEtab.var"#_get_prior##4#_get_prior##5"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}}, prob_cl_stage::PEtab.PEtabODEProblem{PEtabTraining.var"#_get_nllh##0#_get_nllh##1"{Vector{Int64}, PEtab.PEtabODEProblem{PEtab.var"#_get_nllh##0#_get_nllh##1"{PEtab.var"#_get_nllh##2#_get_nllh##3"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, 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PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6}}}, PEtab.ModelInfo, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}}, PEtab.var"#_get_prior##2#_get_prior##3"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}, PEtab.var"#262#263"{PEtab.var"#264#265"{Bool, PEtab.var"#_get_hess_forward_AD##2#_get_hess_forward_AD##3"{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, ForwardDiff.HessianConfig{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}, 9}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}}}, PEtab.ModelInfo}, PEtab.var"#_get_prior##4#_get_prior##5"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}}}}) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/common.jl:19 [12] test_split_uniform_datapoints(model_id::String, n_chunks::Int64) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:33 [13] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:120 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:119 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:89 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [19] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:10 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [21] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:10 [inlined] [22] eval(m::Module, e::Any) @ Core ./boot.jl:517 [23] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:28 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:517 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 Custom data-points: Error During Test at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:133 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/Boehm_JProteomeRes2014/measurementData_Boehm_JProteomeRes2014.tsv": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:188 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:390 [5] open(fname::String, mode::String) @ Base ./iostream.jl:389 [6] with(f::CSV.var"#90#91"{Bool, Bool, Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, DataFrames.DataFrameRows{DataFrames.DataFrame}, CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}, Vector{UInt8}, Int64, Int64, NTuple{8, Symbol}}, io::Any, append::Bool, compress::Bool) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:287 [7] #write#88 @ ~/.julia/packages/CSV/LiiJM/src/write.jl:215 [inlined] [8] kwcall(::@NamedTuple{append::Bool, compress::Bool, header::Bool, delim::Char}, ::typeof(CSV.write), sch::Tables.Schema{(:observableId, :preequilibrationConditionId, :simulationConditionId, :measurement, :time, :observableParameters, :noiseParameters, :datasetId), Tuple{String, Missing, String, Float64, Float64, Missing, String, String}}, rows::DataFrames.DataFrameRows{DataFrames.DataFrame}, file::String, opts::CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:203 [9] write(file::String, itr::DataFrames.DataFrame; append::Bool, compress::Bool, writeheader::Nothing, partition::Bool, kw::@Kwargs{delim::Char}) @ CSV ~/.julia/packages/CSV/LiiJM/src/write.jl:199 [10] write @ ~/.julia/packages/CSV/LiiJM/src/write.jl:162 [inlined] [11] test_nllh(model_id::String, measurements_df::DataFrames.DataFrame, measurements_df_tmp::DataFrames.DataFrame, prob_original::PEtab.PEtabODEProblem{PEtab.var"#_get_nllh##0#_get_nllh##1"{PEtab.var"#_get_nllh##2#_get_nllh##3"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo, Bool, PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}, PEtab.var"#_get_grad##0#_get_grad##1"{PEtab.var"#_get_grad##2#_get_grad##3"{PEtab.var"#_get_grad_forward_AD##0#_get_grad_forward_AD##1"{PEtab.var"#298#299"{Bool, Bool, Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, ForwardDiff.GradientConfig{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6}}}, PEtab.ModelInfo, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}}, PEtab.var"#_get_prior##2#_get_prior##3"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}, PEtab.var"#262#263"{PEtab.var"#264#265"{Bool, PEtab.var"#_get_hess_forward_AD##2#_get_hess_forward_AD##3"{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, ForwardDiff.HessianConfig{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}, 9}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}}}, PEtab.ModelInfo}, PEtab.var"#_get_prior##4#_get_prior##5"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}}, prob_cl_stage::PEtab.PEtabODEProblem{PEtabTraining.var"#_get_nllh##0#_get_nllh##1"{Vector{Int64}, PEtab.PEtabODEProblem{PEtab.var"#_get_nllh##0#_get_nllh##1"{PEtab.var"#_get_nllh##2#_get_nllh##3"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo, Bool, PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}, PEtab.var"#_get_grad##0#_get_grad##1"{PEtab.var"#_get_grad##2#_get_grad##3"{PEtab.var"#_get_grad_forward_AD##0#_get_grad_forward_AD##1"{PEtab.var"#298#299"{Bool, Bool, Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, ForwardDiff.GradientConfig{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6}}}, PEtab.ModelInfo, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}}, PEtab.var"#_get_prior##2#_get_prior##3"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}, PEtab.var"#262#263"{PEtab.var"#264#265"{Bool, PEtab.var"#_get_hess_forward_AD##2#_get_hess_forward_AD##3"{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, 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PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, ForwardDiff.GradientConfig{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#303#304"{Bool, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, Vector{Float64}, Vector{Float64}, Vector{Float64}, PEtab.ModelInfo}, Float64}, Float64, 6}}}, PEtab.ModelInfo, PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}}, PEtab.var"#_get_prior##2#_get_prior##3"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}, PEtab.var"#262#263"{PEtab.var"#264#265"{Bool, PEtab.var"#_get_hess_forward_AD##2#_get_hess_forward_AD##3"{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, ForwardDiff.HessianConfig{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}, 9}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{PEtab.var"#_get_hess_forward_AD##0#_get_hess_forward_AD##1"{PEtab.PEtabODEProblemInfo{PEtab.ODESolver, PEtab.ODESolver, PEtab.PEtabODEProblemCache{Vector{Float64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, Matrix{Float64}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Dict{Symbol, PreallocationTools.DiffCache}, Vector{Float64}}}, PEtab.ModelInfo}, Float64}, Float64, 9}}}, PEtab.ModelInfo}, PEtab.var"#_get_prior##4#_get_prior##5"{PEtab.var"#_get_prior##0#_get_prior##1"{PEtab.Priors, PEtab.ParameterIndices}}}}}}}) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/common.jl:19 [12] test_split_custom_datapoints(model_id::String, chunk_sizes::Vector{Int64}) @ Main.var"##Curriculum learning#148" ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:68 [13] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:136 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [15] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:134 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [17] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:89 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [19] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:10 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [21] macro expansion @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:10 [inlined] [22] eval(m::Module, e::Any) @ Core ./boot.jl:517 [23] top-level scope @ ~/.julia/packages/PEtabTraining/4JoU1/test/runtests.jl:28 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:517 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:585 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 129 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x7e217ba19d40) at /lib/x86_64-linux-gnu/libc.so.6 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) posix_memalign at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) aligned_alloc at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_opa.cc:78 [inlined] operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_opa.cc:149 operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_opant.cc:36 _ZN4llvm15allocate_bufferEmm at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8DenseMapINS_15ScalarEvolution6FoldIDEPKNS_4SCEVENS_12DenseMapInfoIS2_vEENS_6detail12DenseMapPairIS2_S5_EEE4growEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL20insertFoldCacheEntryRKN4llvm15ScalarEvolution6FoldIDEPKNS_4SCEVERNS_8DenseMapIS1_S6_NS_12DenseMapInfoIS1_vEENS_6detail12DenseMapPairIS1_S6_EEEERNS7_IS6_NS_11SmallVectorIS1_Lj2EEENS8_IS6_vEENSB_IS6_SG_EEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution17getZeroExtendExprEPKNS_4SCEVEPNS_4TypeEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution15willNotOverflowENS_11Instruction9BinaryOpsEbPKNS_4SCEVES5_PKS1_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution35getStrengthenedNoWrapFlagsFromBinOpEPKNS_25OverflowingBinaryOperatorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_114SimplifyIndvar13simplifyUsersEPN4llvm7PHINodeEPNS1_9IVVisitorE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17simplifyUsersOfIVEPNS_7PHINodeEPNS_15ScalarEvolutionEPNS_13DominatorTreeEPNS_8LoopInfoEPKNS_19TargetTransformInfoERNS_15SmallVectorImplINS_14WeakTrackingVHEEERNS_12SCEVExpanderEPNS_9IVVisitorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm18IndVarSimplifyPass3runERNS_4LoopERNS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEES5_RNS_10LPMUpdaterE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:976 operator() at /source/src/jitlayers.cpp:1301 operator() at /source/src/jitlayers.cpp:1438 [inlined] optimizeModule at /source/src/jitlayers.cpp:2358 materialize at /source/src/jitlayers.cpp:883 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) process_tasks at /source/src/julia-task-dispatcher.h:370 [inlined] work_until at /source/src/julia-task-dispatcher.h:352 wait at /source/src/julia-task-dispatcher.h:84 [inlined] get at /source/src/julia-task-dispatcher.h:171 [inlined] publishCIs at /source/src/jitlayers.cpp:2069 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:496 jl_compile_method_internal at /source/src/gf.c:3652 _jl_invoke at /source/src/gf.c:4105 [inlined] ijl_apply_generic at /source/src/gf.c:4339 #_get_lv_ude_model#2 at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/ude_model.jl:61 _get_lv_ude_model at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/ude_model.jl:17 [inlined] #_get_petab_problem#6 at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/common.jl:96 [inlined] _get_petab_problem at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/common.jl:88 [inlined] test_output_regularization at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:76 unknown function (ip: 0x7e2106b1e0ff) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 macro expansion at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:145 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] macro expansion at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:145 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] top-level scope at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:89 jl_invoke_oneshot at /source/src/gf.c:4148 ijl_eval_thunk at /source/src/toplevel.c:758 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7e2117f6c112) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_eval_module_expr at /source/src/toplevel.c:263 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e217b9a9249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000079c862f4aef0 Total snapshots: 465. Utilization: 0% ╎465 @Base/task.jl:1168 wait_forever() 464╎ 465 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 22276283 (Pool: 22275426; Big: 857); GC: 17 [129] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:88 unknown function (ip: 0x7e217ba19d40) at /lib/x86_64-linux-gnu/libc.so.6 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) _ZN4llvm15SmallVectorBaseIjE13mallocForGrowEPvmmRm at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23SmallVectorTemplateBaseINS_13MDAttachments10AttachmentELb0EE4growEm at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13MDAttachments6insertEjRNS_6MDNodeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) decorateInst at /source/src/codegen.cpp:1703 emit_aliased_load at /source/src/cgutils.cpp:2349 typed_load at /source/src/cgutils.cpp:2452 emit_getfield_knownidx at /source/src/cgutils.cpp:3474 emit_builtin_call at /source/src/codegen.cpp:4781 emit_call at /source/src/codegen.cpp:5708 emit_expr at /source/src/codegen.cpp:6611 emit_ssaval_assign at /source/src/codegen.cpp:6128 emit_stmtpos at /source/src/codegen.cpp:6431 [inlined] emit_function at /source/src/codegen.cpp:9717 jl_emit_code at /source/src/codegen.cpp:10056 jl_emit_codeinst at /source/src/codegen.cpp:10121 jl_emit_codeinst_to_jit_impl at /source/src/jitlayers.cpp:464 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1712 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1719 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1727 jfptr_typeinf_ext_toplevel_3.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] jl_type_infer at /source/src/gf.c:467 jl_compile_method_internal at /source/src/gf.c:3640 _jl_invoke at /source/src/gf.c:4105 [inlined] ijl_apply_generic at /source/src/gf.c:4339 macro expansion at /home/pkgeval/.julia/packages/PEtab/eGJNp/src/julia_input/petab_model.jl:178 [inlined] macro expansion at ./timing.jl:503 [inlined] #_PEtabModel#153 at /home/pkgeval/.julia/packages/PEtab/eGJNp/src/julia_input/petab_model.jl:176 _PEtabModel at /home/pkgeval/.julia/packages/PEtab/eGJNp/src/julia_input/petab_model.jl:121 [inlined] _PEtabModel at /home/pkgeval/.julia/packages/PEtab/eGJNp/src/julia_input/petab_model.jl:116 #PEtabModel#152 at /home/pkgeval/.julia/packages/PEtab/eGJNp/src/julia_input/petab_model.jl:71 PEtabModel at /home/pkgeval/.julia/packages/PEtab/eGJNp/src/julia_input/petab_model.jl:31 unknown function (ip: 0x7e2106b50425) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 #_get_lv_ude_model#2 at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/ude_model.jl:61 _get_lv_ude_model at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/models/ude_model.jl:17 [inlined] #_get_petab_problem#6 at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/common.jl:96 [inlined] _get_petab_problem at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/common.jl:88 [inlined] test_output_regularization at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:76 unknown function (ip: 0x7e2106b1e0ff) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 macro expansion at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:145 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] macro expansion at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:145 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] top-level scope at /home/pkgeval/.julia/packages/PEtabTraining/4JoU1/test/curriculum.jl:89 jl_invoke_oneshot at /source/src/gf.c:4148 ijl_eval_thunk at /source/src/toplevel.c:758 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7e2117f6c112) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_eval_module_expr at /source/src/toplevel.c:263 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e217b9a9249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 293329412 (Pool: 293325034; Big: 4378); GC: 75 PkgEval terminated after 2723.37s: test duration exceeded the time limit