Package evaluation to test NeighborhoodApproximationIndex on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T21:59:49.414 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.08s ################################################################################ # Installation # Installing NeighborhoodApproximationIndex... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [73dc1408] + NeighborhoodApproximationIndex v0.4.1 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [324d7699] + CategoricalArrays v0.10.9 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [842dd82b] + InlineStrings v1.4.5 ⌅ [6d0fbc77] + Intersections v0.2.8 ⌅ [b20bd276] + InvertedFiles v0.2.2 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [5d8de97f] + KCenters v0.6.1 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [7f8f8fb0] + LearnBase v0.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌃ [9920b226] + MLDataPattern v0.5.4 [cc2ba9b6] + MLDataUtils v0.5.4 [66a33bbf] + MLLabelUtils v0.5.7 [dbb5928d] + MappedArrays v0.4.3 [e1d29d7a] + Missings v1.2.0 [73dc1408] + NeighborhoodApproximationIndex v0.4.1 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.2.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [0e966ebe] + SearchModels v0.3.3 [91c51154] + SentinelArrays v1.4.9 ⌅ [053f045d] + SimilaritySearch v0.8.20 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.94s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1352.9 ms ✓ Intersections 8339.5 ms ✓ SimilaritySearch 10417.7 ms ✓ KCenters 3975.2 ms ✓ InvertedFiles 13776.2 ms ✓ NeighborhoodApproximationIndex 5 dependencies successfully precompiled in 38 seconds. 63 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 26 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 61.99s ################################################################################ # Testing # Testing NeighborhoodApproximationIndex Status `/tmp/jl_K2OT8Y/Project.toml` ⌅ [6d0fbc77] Intersections v0.2.8 ⌅ [b20bd276] InvertedFiles v0.2.2 ⌅ [5d8de97f] KCenters v0.6.1 [73dc1408] NeighborhoodApproximationIndex v0.4.1 [d96e819e] Parameters v0.12.3 ⌅ [0e966ebe] SearchModels v0.3.3 ⌅ [053f045d] SimilaritySearch v0.8.20 ⌅ [2913bbd2] StatsBase v0.33.21 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_K2OT8Y/Manifest.toml` ⌅ [324d7699] CategoricalArrays v0.10.9 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [842dd82b] InlineStrings v1.4.5 ⌅ [6d0fbc77] Intersections v0.2.8 ⌅ [b20bd276] InvertedFiles v0.2.2 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [5d8de97f] KCenters v0.6.1 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [7f8f8fb0] LearnBase v0.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [9920b226] MLDataPattern v0.5.4 [cc2ba9b6] MLDataUtils v0.5.4 [66a33bbf] MLLabelUtils v0.5.7 [dbb5928d] MappedArrays v0.4.3 [e1d29d7a] Missings v1.2.0 [73dc1408] NeighborhoodApproximationIndex v0.4.1 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.2.3 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 ⌅ [0e966ebe] SearchModels v0.3.3 [91c51154] SentinelArrays v1.4.9 ⌅ [053f045d] SimilaritySearch v0.8.20 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3a884ed6] UnPack v1.0.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: ********************* JIT warming ********************* [ Info: creating gold standard 0.332101 seconds (238.69 k allocations: 14.034 MiB, 99.93% compilation time) SearchModels> search params iter=0, tol=-1.0, initialpopulation=16, maxpopulation=16, bsize=4, mutbsize=16, crossbsize=8 SearchModels iteration 1> population: 13, bsize: 4, queue: 16, observed: 29, best-error: (visited = (8.0, 9.5, 10.0), radius = (6.185568332672119, 12.97965636253357, 19.008323669433594), recall = 0.95, searchtime = 0.0318187723) worst-error: (visited = (7.0, 9.1, 10.0), radius = (5.73635196685791, 11.887200784683227, 19.008323669433594), recall = 0.9100000000000001, searchtime = 2.904e-6) SearchModels iteration 2> population: 16, bsize: 4, queue: 7, observed: 36, best-error: (visited = (8.0, 9.5, 10.0), radius = (6.185568332672119, 12.97965636253357, 19.008323669433594), recall = 0.95, searchtime = 0.0318187723) worst-error: (visited = (10.0, 10.0, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 1.0, searchtime = 1.8638999999999998e-6) SearchModels iteration 3> population: 16, bsize: 4, queue: 7, observed: 43, best-error: (visited = (8.0, 9.5, 10.0), radius = (6.185568332672119, 12.97965636253357, 19.008323669433594), recall = 0.95, searchtime = 0.0318187723) worst-error: (visited = (10.0, 10.0, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 1.0, searchtime = 1.7329999999999998e-6) SearchModels iteration 4> population: 16, bsize: 4, queue: 4, observed: 47, best-error: (visited = (9.0, 9.5, 10.0), radius = (6.0824079513549805, 11.75631594657898, 19.008323669433594), recall = 0.95, searchtime = 2.054e-6) worst-error: (visited = (9.0, 9.9, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.99, searchtime = 2.3030000000000002e-6) SearchModels iteration 5> population: 16, bsize: 4, queue: 4, observed: 51, best-error: (visited = (9.0, 9.5, 10.0), radius = (6.0824079513549805, 11.75631594657898, 19.008323669433594), recall = 0.95, searchtime = 2.054e-6) worst-error: (visited = (9.0, 9.9, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.99, searchtime = 2.3030000000000002e-6) SearchModels iteration 6> population: 16, bsize: 4, queue: 5, observed: 56, best-error: (visited = (9.0, 9.5, 10.0), radius = (6.0824079513549805, 11.75631594657898, 19.008323669433594), recall = 0.95, searchtime = 2.054e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 2.0659999999999998e-6) SearchModels iteration 7> population: 16, bsize: 4, queue: 1, observed: 57, best-error: (visited = (9.0, 9.5, 10.0), radius = (6.0824079513549805, 11.75631594657898, 19.008323669433594), recall = 0.95, searchtime = 2.054e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 12.973012924194336, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.9749999999999997e-6) SearchModels iteration 8> population: 16, bsize: 4, queue: 1, observed: 58, best-error: (visited = (8.0, 9.5, 10.0), radius = (3.6243934631347656, 11.639641523361206, 19.008323669433594), recall = 0.95, searchtime = 1.98e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.874e-6) SearchModels iteration 9> population: 16, bsize: 4, queue: 0, observed: 58, best-error: (visited = (8.0, 9.5, 10.0), radius = (3.6243934631347656, 11.639641523361206, 19.008323669433594), recall = 0.95, searchtime = 1.98e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.874e-6) SearchModels iteration 10> population: 16, bsize: 4, queue: 1, observed: 59, best-error: (visited = (8.0, 9.5, 10.0), radius = (6.185568332672119, 12.97965636253357, 19.008323669433594), recall = 0.95, searchtime = 0.0318187723) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.874e-6) SearchModels iteration 11> population: 16, bsize: 4, queue: 0, observed: 59, best-error: (visited = (9.0, 9.5, 10.0), radius = (6.0824079513549805, 11.75631594657898, 19.008323669433594), recall = 0.95, searchtime = 2.054e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.874e-6) SearchModels iteration 12> population: 16, bsize: 4, queue: 1, observed: 60, best-error: (visited = (8.0, 9.5, 10.0), radius = (6.185568332672119, 12.97965636253357, 19.008323669433594), recall = 0.95, searchtime = 0.0318187723) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.874e-6) SearchModels iteration 13> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (8.0, 9.5, 10.0), radius = (6.185568332672119, 11.001292181015014, 19.008323669433594), recall = 0.95, searchtime = 2.039e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.987e-6) SearchModels iteration 14> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (9.0, 9.5, 10.0), radius = (6.0824079513549805, 11.75631594657898, 19.008323669433594), recall = 0.95, searchtime = 2.054e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.987e-6) SearchModels iteration 15> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (8.0, 9.5, 10.0), radius = (3.6243934631347656, 11.639641523361206, 19.008323669433594), recall = 0.95, searchtime = 1.98e-6) worst-error: (visited = (9.0, 9.8, 10.0), radius = (6.185568332672119, 13.115119123458863, 19.008323669433594), recall = 0.9800000000000001, searchtime = 1.987e-6) SearchModels> reached maximum number of iterations 16 NeighborhoodApproximationIndex.jl: Error During Test at /home/pkgeval/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:55 Got exception outside of a @test MethodError: no method matching InvertedFiles.BinaryInvertedFile(::Int64, ::JaccardDistance, ::Type{Int32}) The type `InvertedFiles.BinaryInvertedFile` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: InvertedFiles.BinaryInvertedFile(::Any, ::Any, ::Any, !Matched::Any) @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:19 InvertedFiles.BinaryInvertedFile(::Integer, ::Any) @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:44 InvertedFiles.BinaryInvertedFile(::Integer) @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:44 ... Stacktrace: [1] KnrIndex(dist::SqL2Distance, db::MatrixDatabase{Matrix{Float32}}; invfiletype::Type{InvertedFiles.BinaryInvertedFile}, invfiledist::JaccardDistance, refs::MatrixDatabase{Matrix{Float32}}, centers::Nothing, kbuild::Int64, ksearch::Int64, centersrecall::Float64, ordering::DistanceOrdering, pools::Nothing, parallel_block::Int64, verbose::Bool) @ NeighborhoodApproximationIndex ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/src/knr.jl:244 [2] kwcall(::@NamedTuple{kbuild::Int64, ksearch::Int64, parallel_block::Int64, centersrecall::Float64, refs::MatrixDatabase{Matrix{Float32}}, ordering::DistanceOrdering}, ::Type{KnrIndex}, dist::SqL2Distance, db::MatrixDatabase{Matrix{Float32}}) @ NeighborhoodApproximationIndex ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/src/knr.jl:215 [3] macro expansion @ ./timing.jl:503 [inlined] [4] runtest(; dim::Int64, n::Int64, m::Int64, numcenters::Int64, k::Int64, centersrecall::Float64, kbuild::Int64, ksearch::Int64, parallel_block::Int64, ordering::DistanceOrdering, minrecall::Float64) @ Main ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:17 [5] kwcall(::@NamedTuple{dim::Int64, n::Int64, m::Int64, numcenters::Int64, k::Int64, centersrecall::Float64}, ::typeof(runtest)) @ Main ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:5 [6] top-level scope @ ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:56 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [8] macro expansion @ ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:58 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:517 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [13] _start() @ Base ./client.jl:585 Test Summary: | Error Total Time NeighborhoodApproximationIndex.jl | 1 1 20.8s RNG of the outermost testset: Random.Xoshiro(0x7fd657fecd63a2c8, 0xe57179bec5177b2a, 0xf2ce638ba437d420, 0x2620c30d3324e355, 0xf9180c51b7c37039) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:55 Testing failed after 43.31s ERROR: LoadError: Package NeighborhoodApproximationIndex errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 142.73s: package tests unexpectedly errored