Package evaluation to test MatrixLMnet on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T19:33:31.283 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.54s ################################################################################ # Installation # Installing MatrixLMnet... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [436227dc] + MatrixLMnet v1.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [f0e99cf1] + MLBase v0.9.2 ⌅ [37290134] + MatrixLM v0.2.3 [436227dc] + MatrixLMnet v1.1.1 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.2.3 [43287f4e] + PtrArrays v1.4.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.9 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.98s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 9483.4 ms ✓ MatrixLM 9305.8 ms ✓ MatrixLMnet 2 dependencies successfully precompiled in 20 seconds. 77 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 26 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 41.61s ################################################################################ # Testing # Testing MatrixLMnet Status `/tmp/jl_U1FxWX/Project.toml` [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [3f79f04f] Helium v0.2.1 [f0e99cf1] MLBase v0.9.2 ⌅ [37290134] MatrixLM v0.2.3 [436227dc] MatrixLMnet v1.1.1 [189a3867] Reexport v1.2.2 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_U1FxWX/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [3f79f04f] Helium v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [f0e99cf1] MLBase v0.9.2 ⌅ [37290134] MatrixLM v0.2.3 [436227dc] MatrixLMnet v1.1.1 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.2.3 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.9 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed Lasso vs Elastic Net when α=1 test 5 - cd: Test Passed Test that original data remains unchanged test 6: Test Passed Tests mlmnet finished! CV Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed CV Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed CV Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed CV Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed CV Lasso vs Elastic Net when α=1 test 5 - cd: Test Passed Tests mlmnet_cv finished! Summary cross-validation test 1 - ista: Test Passed Summary cross-validation test 2 - fista: Test Passed Summary cross-validation test 3 - fista_bt: Test Passed Summary cross-validation test 4 - admm: Test Passed Summary cross-validation test 5 - cd: Test Passed BIC validation test 1:Test Passed Criterion: 26.61961006805839 Number of iterations: 12 Criterion: 18.625904007145174 Number of iterations: 9 Criterion: 13.744251601890443 Number of iterations: 9 Adding X intercept to newPredictors. Adding Z intercept to newPredictors. Criterion: 133.9853461153782 Number of iterations: 16 Criterion: 77.64117896934785 Number of iterations: 19 Criterion: 50.598463881853284 Number of iterations: 14 Removing X intercept from newPredictors. Removing Z intercept from newPredictors. Backtransform test α=0 and λ=0 test 3-a: Test Passed Backtransform test α=0 and λ=0 test 3-b: Test Passed Backtransform test α=0 and λ=0 test 3-c: Test Passed Backtransform test α=0 and λ=0 test 3-d: Test Passed Tests utilities finished! Testing minimize_rows function: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:24 Expression: MatrixLMnet.minimize_rows([CartesianIndex(3, 5), CartesianIndex(2, 1)]) == [CartesianIndex(3, 5), CartesianIndex(2, 1)] Evaluated: CartesianIndex{2}[CartesianIndex(2, 1), CartesianIndex(3, 5)] == CartesianIndex{2}[CartesianIndex(3, 5), CartesianIndex(2, 1)] Stacktrace: [1] top-level scope @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:15 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:24 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] Testing minimize_rows function: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:30 Expression: MatrixLMnet.minimize_rows([CartesianIndex(4, 3), CartesianIndex(1, 3), CartesianIndex(2, 4), CartesianIndex(3, 4)]) == [CartesianIndex(2, 4), CartesianIndex(1, 3)] Evaluated: CartesianIndex{2}[CartesianIndex(1, 3), CartesianIndex(2, 4)] == CartesianIndex{2}[CartesianIndex(2, 4), CartesianIndex(1, 3)] Stacktrace: [1] top-level scope @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:15 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:30 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] Test Summary: | Pass Fail Total Time MatrixLMnet | 34 2 36 2m15.3s coef and predict | 2 2 0.3s With Intercept | 4 4 3.0s Testing minimize_rows function | 4 2 6 5.0s RNG of the outermost testset: Xoshiro(0x335686823a5b4419, 0x88648265ae0a5b52, 0x736d6b9e2254dd7b, 0x05e5dfbd4703cae7, 0x36f045f6e13d35c7) ERROR: LoadError: Some tests did not pass: 34 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:7 Testing failed after 154.36s ERROR: LoadError: Package MatrixLMnet errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 227.45s: package has test failures