Package evaluation to test ManifoldLearning on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T18:33:54.749 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.1s ################################################################################ # Installation # Installing ManifoldLearning... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [06eb3307] + ManifoldLearning v0.9.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.5 ⌃ [86223c79] + Graphs v1.13.1 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [06eb3307] + ManifoldLearning v0.9.0 [e1d29d7a] + Missings v1.2.0 ⌅ [6f286f6a] + MultivariateStats v0.9.0 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [68821587] + Arpack_jll v3.5.2+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 4311.0 ms ✓ MultivariateStats 5149.5 ms ✓ ManifoldLearning 2 dependencies successfully precompiled in 10 seconds. 47 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 19 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 33.52s ################################################################################ # Testing # Testing ManifoldLearning Status `/tmp/jl_bsO8SQ/Project.toml` [861a8166] Combinatorics v1.1.0 ⌃ [86223c79] Graphs v1.13.1 [06eb3307] ManifoldLearning v0.9.0 ⌅ [6f286f6a] MultivariateStats v0.9.0 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_bsO8SQ/Manifest.toml` [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 ⌃ [86223c79] Graphs v1.13.1 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [06eb3307] ManifoldLearning v0.9.0 [e1d29d7a] Missings v1.2.0 ⌅ [6f286f6a] MultivariateStats v0.9.0 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [68821587] Arpack_jll v3.5.2+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Nearest Neighbors | 45 45 44.7s Test Summary: | Pass Total Time Laplacian | 4 4 2.7s ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::Isomap{ManifoldLearning.BruteForce}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::LEM{ManifoldLearning.BruteForce, Float32}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::LEM{ManifoldLearning.BruteForce, Float64}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: Found 3 connected components. Largest component is selected. └ @ ManifoldLearning ~/.julia/packages/ManifoldLearning/qUlAd/src/utils.jl:95 ┌ Warning: k > 3: regularization will be used └ @ ManifoldLearning ~/.julia/packages/ManifoldLearning/qUlAd/src/lle.jl:71 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::LLE{ManifoldLearning.BruteForce, Float32}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: k > 3: regularization will be used └ @ ManifoldLearning ~/.julia/packages/ManifoldLearning/qUlAd/src/lle.jl:71 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::LLE{ManifoldLearning.BruteForce, Float64}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::HLLE{ManifoldLearning.BruteForce, Float32}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::HLLE{ManifoldLearning.BruteForce, Float64}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: Found 3 connected components. Largest component is selected. └ @ ManifoldLearning ~/.julia/packages/ManifoldLearning/qUlAd/src/utils.jl:95 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::LTSA{ManifoldLearning.BruteForce, Float32}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::LTSA{ManifoldLearning.BruteForce, Float64}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::DiffMap{Float32}) at diffmaps.jl:43 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/diffmaps.jl:43 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::DiffMap{Float64}) at diffmaps.jl:43 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/diffmaps.jl:43 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::TSNE{ManifoldLearning.BruteForce, Float32}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 ┌ Warning: `transform(m)` is deprecated, use `predict(m)` instead. │ caller = show(io::IOBuffer, R::TSNE{ManifoldLearning.BruteForce, Float64}) at interface.jl:61 └ @ Core ~/.julia/packages/ManifoldLearning/qUlAd/src/interface.jl:61 Test Summary: | Pass Total Time Manifold Learning | 164 164 2m43.4s Test Summary: | Pass Total Time OOS | 2 2 5.7s Testing ManifoldLearning tests passed Testing completed after 230.59s PkgEval succeeded after 299.18s