Package evaluation to test LightGBM on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T15:10:02.502 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.55s ################################################################################ # Installation # Installing LightGBM... Resolving package versions... Installed LightGBM ─ v2.2.2 Updating `~/.julia/environments/v1.14/Project.toml` [7acf609c] + LightGBM v2.2.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [692b3bcd] + JLLWrappers v1.7.1 [7acf609c] + LightGBM v2.2.2 [e80e1ace] + MLJModelInterface v1.12.1 [21216c6a] + Preferences v1.5.2 [30f210dd] + ScientificTypesBase v3.1.0 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 ⌅ [0e4427ef] + LightGBM_jll v3.3.5+1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building LightGBM → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/38597e3f0b9dbaa3461b71b7e1ee425bceb2dd5b/build.log` Installation completed after 10.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 2686.4 ms ✓ LightGBM_jll 6667.6 ms ✓ LightGBM 2 dependencies successfully precompiled in 10 seconds. 153 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 83 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 35.99s ################################################################################ # Testing # Testing LightGBM Status `/tmp/jl_1vXhZY/Project.toml` [324d7699] CategoricalArrays v1.0.2 [8bb1440f] DelimitedFiles v1.9.1 [7acf609c] LightGBM v2.2.2 [a7f614a8] MLJBase v1.12.1 [a19d573c] StatisticalMeasures v0.3.4 [ade2ca70] Dates v1.11.0 [8f399da3] Libdl v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1vXhZY/Manifest.toml` [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.8 [9718e550] Baselet v0.1.1 [324d7699] CategoricalArrays v1.0.2 [af321ab8] CategoricalDistributions v0.2.1 [d360d2e6] ChainRulesCore v1.26.0 [3da002f7] ColorTypes v0.12.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.40 [b964fa9f] LaTeXStrings v1.4.0 [92ad9a40] LearnAPI v2.0.1 [7acf609c] LightGBM v2.2.2 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [a7f614a8] MLJBase v1.12.1 [e80e1ace] MLJModelInterface v1.12.1 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.33 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v3.2.3 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.2.0 [30f210dd] ScientificTypesBase v3.1.0 [7e506255] ScopedValues v1.6.0 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [a19d573c] StatisticalMeasures v0.3.4 [c062fc1d] StatisticalMeasuresBase v0.1.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [28d57a85] Transducers v0.4.85 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 ⌅ [0e4427ef] LightGBM_jll v3.3.5+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: lib_lightgbm found in system dirs! [LightGBM] [Fatal] Size of feature_names error, should equal with total number of features [LightGBM] [Fatal] Size of feature_names error, should equal with total number of features [LightGBM] [Fatal] Size of feature_names error, should equal with total number of features [LightGBM] [Fatal] Size of feature_names error, should equal with total number of features [LightGBM] [Fatal] Could not find ignore column any_column in data file [LightGBM] [Fatal] Unknown token label in data file [LightGBM] [Fatal] Could not find group/query column some_column in data file [LightGBM] [Fatal] [Used indices of subset]: does not tolerate element [#1 = 4] outside [0, 2] [LightGBM] [Fatal] Input data type error or field not found [LightGBM] [Warning] Feature (Column_0) is missed in data file. If it is weight/query/group/ignore_column, you can ignore this warning. [LightGBM] [Warning] Feature (Column_1) is missed in data file. If it is weight/query/group/ignore_column, you can ignore this warning. [LightGBM] [Warning] Contains only one class [LightGBM] [Info] Number of positive: 0, number of negative: 3 [LightGBM] [Info] Total Bins 0 [LightGBM] [Info] Number of data points in the train set: 3, number of used features: 0 [LightGBM] [Warning] Contains only one class [LightGBM] [Info] Number of positive: 0, number of negative: 3 [LightGBM] [Info] Total Bins 0 [LightGBM] [Info] Number of data points in the train set: 3, number of used features: 0 Test Summary: | Pass Broken Total Time FFI unit tests | 256 3 259 31.0s [LightGBM] [Warning] Auto-choosing col-wise multi-threading, the overhead of testing was 0.000343 seconds. You can set `force_col_wise=true` to remove the overhead. [LightGBM] [Info] Total Bins 1670 [LightGBM] [Info] Number of data points in the train set: 500, number of used features: 10 [LightGBM] [Info] Start training from score -0.054722 [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] There are no meaningful features, as all feature values are constant. [LightGBM] [Info] Total Bins 0 [LightGBM] [Info] Number of data points in the train set: 30, number of used features: 0 Test Summary: | Pass Total Time MLJ interface tests | 109 109 2m05.8s [LightGBM] [Info] Number of positive: 2503, number of negative: 2497 [LightGBM] [Warning] Auto-choosing col-wise multi-threading, the overhead of testing was 0.008415 seconds. You can set `force_col_wise=true` to remove the overhead. [LightGBM] [Info] Total Bins 17850 [LightGBM] [Info] Number of data points in the train set: 5000, number of used features: 70 [LightGBM] [Info] [binary:BoostFromScore]: pavg=0.500600 -> initscore=0.002400 [LightGBM] [Info] Start training from score 0.002400 [ Info: lib_not_on_sys not found in system dirs, trying fallback [ Info: libcrypt found in system dirs! [ Info: lib_that_simply_doesnt_exist not found in system dirs, trying fallback Test Summary: | Pass Total Time Basic tests | 169 169 1m20.2s (OLD) Basic Tests: Error During Test at /home/pkgeval/.julia/packages/LightGBM/UljbR/test/runtests.jl:95 Got exception outside of a @test LoadError: KeyError: key "LIGHTGBM_EXAMPLES_PATH" not found Stacktrace: [1] (::Base.var"#getindex##11#getindex##12")(k::String) @ Base ./env.jl:164 [2] access_env(onError::Base.var"#getindex##11#getindex##12", var::String) @ Base ./env.jl:60 [3] getindex(::Base.EnvDict, k::String) @ Base ./env.jl:164 [4] top-level scope @ ~/.julia/packages/LightGBM/UljbR/test/integration/basic_tests.jl:7 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [6] top-level scope @ ~/.julia/packages/LightGBM/UljbR/test/runtests.jl:95 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [8] macro expansion @ ~/.julia/packages/LightGBM/UljbR/test/runtests.jl:96 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [10] macro expansion @ ~/.julia/packages/LightGBM/UljbR/test/runtests.jl:96 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:517 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [15] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/LightGBM/UljbR/test/integration/basic_tests.jl:1 weightsTest.jl: Test Failed at /home/pkgeval/.julia/packages/LightGBM/UljbR/test/integration/weightsTest.jl:50 Expression: false Stacktrace: [1] top-level scope @ ~/.julia/packages/LightGBM/UljbR/test/integration/weightsTest.jl:10 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/LightGBM/UljbR/test/integration/weightsTest.jl:50 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] initScoreTest.jl: Test Failed at /home/pkgeval/.julia/packages/LightGBM/UljbR/test/integration/initScoreTest.jl:50 Expression: false Stacktrace: [1] top-level scope @ ~/.julia/packages/LightGBM/UljbR/test/integration/initScoreTest.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/LightGBM/UljbR/test/integration/initScoreTest.jl:50 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [LightGBM] [Warning] Auto-choosing col-wise multi-threading, the overhead of testing was 0.000270 seconds. You can set `force_col_wise=true` to remove the overhead. [LightGBM] [Info] Total Bins 12 [LightGBM] [Info] Number of data points in the train set: 8, number of used features: 3 [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] No further splits with positive gain, best gain: -inf [LightGBM] [Warning] Stopped training because there are no more leaves that meet the split requirements Test Summary: | Pass Fail Error Total Time Integration tests | 2 2 1 5 11.8s (OLD) Basic Tests | 1 1 3.3s Weights Test | 1 1 5.2s weightsTest.jl | 1 1 5.2s Init Score Test | 1 1 0.0s initScoreTest.jl | 1 1 0.0s Group Query Test | 2 2 3.3s RNG of the outermost testset: Random.Xoshiro(0x719b693651fb11c6, 0xde6c9088b85d6f3b, 0xd9c158c64582e522, 0xbb81e6384c27b941, 0x6e352239ebb7e9e8) ERROR: LoadError: Some tests did not pass: 2 passed, 2 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/LightGBM/UljbR/test/runtests.jl:93 Testing failed after 261.36s ERROR: LoadError: Package LightGBM errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 340.02s: package tests unexpectedly errored