Package evaluation to test HMMBase on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T18:00:14.360


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 14.03s


################################################################################
# Installation
#

Installing HMMBase...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [b2b3ca75] + HMMBase v1.0.7
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
⌅ [aaaa29a8] + Clustering v0.14.4
  [34da2185] + Compat v4.18.1
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.123
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.16.0
  [b2b3ca75] + HMMBase v1.0.7
⌅ [e91730f6] + Hungarian v0.6.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [b8a86587] + NearestNeighbors v0.4.27
  [bac558e1] + OrderedCollections v1.8.1
⌃ [90014a1f] + PDMats v0.11.35
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.2
  [43287f4e] + PtrArrays v1.4.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.7.1
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 5.81s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   1908.9 ms  ✓ Hungarian
   6335.5 ms  ✓ HMMBase
  2 dependencies successfully precompiled in 9 seconds. 64 already precompiled.
  9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 28 dependents of these packages may trigger further precompilation to work with the unexpected versions.

Precompilation completed after 34.05s


################################################################################
# Testing
#

     Testing HMMBase
      Status `/tmp/jl_xT5ER0/Project.toml`
  [dce04be8] ArgCheck v2.5.0
⌅ [aaaa29a8] Clustering v0.14.4
  [31c24e10] Distributions v0.25.123
  [b2b3ca75] HMMBase v1.0.7
⌅ [e91730f6] Hungarian v0.6.0
  [682c06a0] JSON v1.4.0
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_xT5ER0/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
⌅ [aaaa29a8] Clustering v0.14.4
  [34da2185] Compat v4.18.1
  [9a962f9c] DataAPI v1.16.0
⌅ [864edb3b] DataStructures v0.18.22
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.123
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.16.0
  [b2b3ca75] HMMBase v1.0.7
⌅ [e91730f6] Hungarian v0.6.0
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [b8a86587] NearestNeighbors v0.4.27
  [bac558e1] OrderedCollections v1.8.1
⌃ [90014a1f] PDMats v0.11.35
  [69de0a69] Parsers v2.8.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.2
  [43287f4e] PtrArrays v1.4.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.7.1
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.5.2
  [ec057cc2] StructUtils v2.6.3
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.30+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
┌ Warning: `MvNormal(μ::AbstractVector{<:Real}, σ::AbstractVector{<:Real})` is deprecated, use `MvNormal(μ, LinearAlgebra.Diagonal(map(abs2, σ)))` instead.
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total  Time
Base          |    4      4  7.5s
Test Summary: | Pass  Total  Time
Base (2)      |    5      5  1.5s
Test Summary: | Pass  Total  Time
Base (3)      |    4      4  0.8s
Test Summary: | Pass  Total  Time
Base (4)      |   10     10  3.5s
Test Summary: | Pass  Total  Time
Base (5)      |    1      1  1.7s
Test Summary: | Pass  Total  Time
Constructors  |    6      6  2.2s
Test Summary:             | Pass  Total  Time
Stationnary Distributions |    6      6  9.2s
Test Summary: | Pass  Total  Time
Messages (1)  |    4      4  3.6s
Test Summary: | Pass  Broken  Total  Time
Messages (3)  |    4       2      6  2.2s
Test Summary: | Pass  Total  Time
Viterbi       |    1      1  0.0s
Test Summary: | Pass  Total  Time
MLE           |    4      4  5.9s
Test Summary: | Pass  Total  Time
Utilities (1) |    8      8  0.7s
Test Summary: | Pass  Total  Time
Utilities (2) |    2      2  9.2s
Test Summary:   | Pass  Total  Time
Reproducibility |    4      4  1.2s

Experimental: Error During Test at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/unit.jl:294
  Got exception outside of a @test
  UndefVarError: `json` not defined in `Main`
  Suggestion: check for spelling errors or missing imports.
  Stacktrace:
    [1] top-level scope
      @ ~/.julia/packages/HMMBase/ZYC4P/test/unit.jl:296
    [2] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined]
    [3] macro expansion
      @ ~/.julia/packages/HMMBase/ZYC4P/test/unit.jl:297 [inlined]
    [4] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:324
    [5] top-level scope
      @ ~/.julia/packages/HMMBase/ZYC4P/test/runtests.jl:2
    [6] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:324
    [7] top-level scope
      @ none:6
    [8] eval(m::Module, e::Any)
      @ Core ./boot.jl:517
    [9] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:310
   [10] _start()
      @ Base ./client.jl:585
Test Summary: | Error  Total  Time
Experimental  |     1      1  2.9s
RNG of the outermost testset: Xoshiro(0xcb82d87b3279db46, 0x5b02822dab8f4a3f, 0x570b36e900712aba, 0x7b378b16d870c1e6, 0xee473f312272dcef)
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/unit.jl:294
in expression starting at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/runtests.jl:2

Testing failed after 76.76s

ERROR: LoadError: Package HMMBase errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:323
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 148.98s: package tests unexpectedly errored