Package evaluation to test GenomicOffsets on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T20:17:09.352 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 12.96s ################################################################################ # Installation # Installing GenomicOffsets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [496adb70] + GenomicOffsets v0.2.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [13072b0f] + AxisAlgorithms v1.1.0 [d360d2e6] + ChainRulesCore v1.26.0 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [7806a523] + DecisionTree v0.12.4 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [b86e33f2] + FFTA v0.3.1 [442a2c76] + FastGaussQuadrature v1.1.0 [1a297f60] + FillArrays v1.16.0 [92c85e6c] + GSL v1.0.1 [496adb70] + GenomicOffsets v0.2.1 [34004b35] + HypergeometricFunctions v0.3.28 [18e54dd8] + IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] + Interpolations v0.15.1 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [5ab0869b] + KernelDensity v0.6.11 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [f8716d33] + MultipleTesting v0.6.0 [6f286f6a] + MultivariateStats v0.10.4 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [2576dda1] + RandomMatrices v0.5.6 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [efce3f68] + WoodburyMatrices v1.1.0 ⌅ [68821587] + Arpack_jll v3.5.2+0 [1b77fbbe] + GSL_jll v2.8.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.86s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 5906.1 ms ✓ RandomMatrices WARNING: Constructor for type "TracyWidom" was extended in `GenomicOffsets` without explicit qualification or import.  NOTE: Assumed "TracyWidom" refers to `RandomMatrices.TracyWidom`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function TracyWidom end`.  Hint: To silence the warning, qualify `TracyWidom` as `RandomMatrices.TracyWidom` in the method signature or explicitly `import RandomMatrices: TracyWidom`. 6894.0 ms ✓ GenomicOffsets 2 dependencies successfully precompiled in 15 seconds. 96 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 46 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ GenomicOffsets │ WARNING: Constructor for type "TracyWidom" was extended in `GenomicOffsets` without explicit qualification or import. │ NOTE: Assumed "TracyWidom" refers to `RandomMatrices.TracyWidom`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function TracyWidom end`. │ Hint: To silence the warning, qualify `TracyWidom` as `RandomMatrices.TracyWidom` in the method signature or explicitly `import RandomMatrices: TracyWidom`. └ Precompilation completed after 38.24s ################################################################################ # Testing # Testing GenomicOffsets Status `/tmp/jl_TD1Pei/Project.toml` [7806a523] DecisionTree v0.12.4 [31c24e10] Distributions v0.25.123 [496adb70] GenomicOffsets v0.2.1 ⌅ [a98d9a8b] Interpolations v0.15.1 [5ab0869b] KernelDensity v0.6.11 [f8716d33] MultipleTesting v0.6.0 [6f286f6a] MultivariateStats v0.10.4 [2576dda1] RandomMatrices v0.5.6 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_TD1Pei/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [13072b0f] AxisAlgorithms v1.1.0 [d360d2e6] ChainRulesCore v1.26.0 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [7806a523] DecisionTree v0.12.4 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [b86e33f2] FFTA v0.3.1 [442a2c76] FastGaussQuadrature v1.1.0 [1a297f60] FillArrays v1.16.0 [92c85e6c] GSL v1.0.1 [496adb70] GenomicOffsets v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [18e54dd8] IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] Interpolations v0.15.1 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [5ab0869b] KernelDensity v0.6.11 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.4 [f8716d33] MultipleTesting v0.6.0 [6f286f6a] MultivariateStats v0.10.4 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [2576dda1] RandomMatrices v0.5.6 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6e75b9c4] ScikitLearnBase v0.5.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [efce3f68] WoodburyMatrices v1.1.0 ⌅ [68821587] Arpack_jll v3.5.2+0 [1b77fbbe] GSL_jll v2.8.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time GenomicOffsets.jl | 33 33 34m54.1s Testing GenomicOffsets tests passed Testing completed after 2105.11s PkgEval succeeded after 2184.78s