Package evaluation to test FaSTLMM on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T16:09:01.803


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 13.76s


################################################################################
# Installation
#

Installing FaSTLMM...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [18d3ab0b] + FaSTLMM v0.2.3
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.21.0
  [79e6a3ab] + Adapt v4.5.0
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.23.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [187b0558] + ConstructionBase v1.6.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.16
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.7
  [18d3ab0b] + FaSTLMM v0.2.3
  [1a297f60] + FillArrays v1.16.0
  [6a86dc24] + FiniteDiff v2.29.0
  [f6369f11] + ForwardDiff v1.3.2
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
⌃ [d3d80556] + LineSearches v7.5.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
⌅ [e1d29d7a] + Missings v0.4.5
⌅ [d41bc354] + NLSolversBase v7.10.0
  [77ba4419] + NaNMath v1.1.3
⌅ [429524aa] + Optim v1.13.3
  [bac558e1] + OrderedCollections v1.8.1
  [85a6dd25] + PositiveFactorizations v0.2.4
  [21216c6a] + Preferences v1.5.2
  [43287f4e] + PtrArrays v1.4.0
  [ae029012] + Requires v1.3.1
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.7.1
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.10
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 5.81s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   1237.8 ms  ✓ Missings
   2415.7 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   4966.2 ms  ✓ StatsBase
   2778.4 ms  ✓ NLSolversBase
   2818.8 ms  ✓ LineSearches
   6716.5 ms  ✓ Optim
WARNING: Method definition flmm(Array{Float64, 2}, Array{Float64, 2}, Array{Float64, 1}) in module FaSTLMM at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:107 overwritten at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:132.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
   2508.5 ms  ? FaSTLMM
  6 dependencies successfully precompiled in 24 seconds. 66 already precompiled.
  9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 25 dependents of these packages may trigger further precompilation to work with the unexpected versions.
  1 dependencies failed but may be precompilable after restarting julia

  1 dependency had output during precompilation:
┌ FaSTLMM
│  WARNING: Method definition flmm(Array{Float64, 2}, Array{Float64, 2}, Array{Float64, 1}) in module FaSTLMM at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:107 overwritten at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:132.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  

Precompilation completed after 47.76s


################################################################################
# Testing
#

     Testing FaSTLMM
      Status `/tmp/jl_bwLWqA/Project.toml`
  [8bb1440f] DelimitedFiles v1.9.1
  [18d3ab0b] FaSTLMM v0.2.3
⌅ [e1d29d7a] Missings v0.4.5
⌅ [429524aa] Optim v1.13.3
  [37e2e46d] LinearAlgebra v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_bwLWqA/Manifest.toml`
  [47edcb42] ADTypes v1.21.0
  [79e6a3ab] Adapt v4.5.0
  [66dad0bd] AliasTables v1.1.3
  [4fba245c] ArrayInterface v7.23.0
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [187b0558] ConstructionBase v1.6.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.3
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.7.16
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.7
  [18d3ab0b] FaSTLMM v0.2.3
  [1a297f60] FillArrays v1.16.0
  [6a86dc24] FiniteDiff v2.29.0
  [f6369f11] ForwardDiff v1.3.2
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
⌃ [d3d80556] LineSearches v7.5.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
⌅ [e1d29d7a] Missings v0.4.5
⌅ [d41bc354] NLSolversBase v7.10.0
  [77ba4419] NaNMath v1.1.3
⌅ [429524aa] Optim v1.13.3
  [bac558e1] OrderedCollections v1.8.1
  [85a6dd25] PositiveFactorizations v0.2.4
  [21216c6a] Preferences v1.5.2
  [43287f4e] PtrArrays v1.4.0
  [ae029012] Requires v1.3.1
  [efcf1570] Setfield v1.1.2
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.7.1
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.10
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.30+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
WARNING: Method definition flmm(Array{Float64, 2}, Array{Float64, 2}, Array{Float64, 1}) in module FaSTLMM at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:107 overwritten at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:132.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.

  1 dependency had output during precompilation:
┌ FaSTLMM
│  [Output was shown above]
└  
WARNING: Method definition flmm(Array{Float64, 2}, Array{Float64, 2}, Array{Float64, 1}) in module FaSTLMM at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:107 overwritten at /home/pkgeval/.julia/packages/FaSTLMM/n7kpb/src/lmm.jl:132.
     Testing FaSTLMM tests passed 

Testing completed after 60.33s

PkgEval succeeded after 140.01s