Package evaluation to test BioCCP on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T16:48:23.578 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.15s ################################################################################ # Installation # Installing BioCCP... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [79e6b149] + BioCCP v0.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [79e6b149] + BioCCP v0.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 5.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 5303.5 ms ✓ StatsBase 1820.8 ms ✓ PDMats → StatsBaseExt 11227.7 ms ✓ Distributions 3394.8 ms ✓ BioCCP 4492.7 ms ✓ Distributions → DistributionsTestExt 5 dependencies successfully precompiled in 27 seconds. 44 already precompiled. 8 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 15 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 52.09s ################################################################################ # Testing # Testing BioCCP Cloning git-repo `https://github.com/kirstvh/BioCCP` Updating git-repo `https://github.com/kirstvh/BioCCP` Status `/tmp/jl_kjbhNx/Project.toml` [79e6b149] BioCCP v0.1.0 `https://github.com/kirstvh/BioCCP#main` [8dfed614] Test v1.11.0 Status `/tmp/jl_kjbhNx/Manifest.toml` [79e6b149] BioCCP v0.1.0 `https://github.com/kirstvh/BioCCP#main` [2a0f44e3] Base64 v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 Testing Running tests... Expectation: Test Failed at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:17 Expression: expectation_minsamplesize(n; p = p_uniform) isa Int64 Evaluated: 72.0 isa Int64 Stacktrace: [1] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:17 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:17 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] Standard deviation: Test Failed at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:25 Expression: std_minsamplesize(n; p = p_uniform) isa Int64 Evaluated: 24.0 isa Int64 Stacktrace: [1] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:25 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:25 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] Probability occurence: Error During Test at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 Test threw exception Expression: prob_occurrence_module(pᵢ, t, r, k) isa Float64 MethodError: no method matching prob_occurrence_module(::Float64, ::Int64, ::Int64, ::Int64) The function `prob_occurrence_module` exists, but no method is defined for this combination of argument types. Closest candidates are: prob_occurrence_module(::Any, ::Any, ::Any) @ BioCCP ~/.julia/packages/BioCCP/QzG6a/src/BioCCP.jl:243 Stacktrace: [1] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Probability occurence: Error During Test at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:57 Test threw exception Expression: all(prob_occurrence_module.(pᵢ, [0, 10, 100, 1000, 10000], r, k) .>= 0) MethodError: no method matching prob_occurrence_module(::Float64, ::Int64, ::Int64, ::Int64) The function `prob_occurrence_module` exists, but no method is defined for this combination of argument types. Closest candidates are: prob_occurrence_module(::Any, ::Any, ::Any) @ BioCCP ~/.julia/packages/BioCCP/QzG6a/src/BioCCP.jl:243 Stacktrace: [1] _broadcast_getindex_evalf @ ./broadcast.jl:702 [inlined] [2] _broadcast_getindex @ ./broadcast.jl:675 [inlined] [3] _getindex @ ./broadcast.jl:698 [inlined] [4] _broadcast_getindex @ ./broadcast.jl:674 [inlined] [5] _getindex @ ./broadcast.jl:619 [inlined] [6] getindex @ ./broadcast.jl:615 [inlined] [7] copy @ ./broadcast.jl:936 [inlined] [8] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(>=), Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(prob_occurrence_module), Tuple{Float64, Vector{Int64}, Int64, Int64}}, Int64}}) @ Base.Broadcast ./broadcast.jl:897 [9] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [11] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [13] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:57 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Probability occurence: Error During Test at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:58 Test threw exception Expression: all(prob_occurrence_module.(pᵢ, [0, 10, 100, 1000, 10000], r, k) .<= 1) MethodError: no method matching prob_occurrence_module(::Float64, ::Int64, ::Int64, ::Int64) The function `prob_occurrence_module` exists, but no method is defined for this combination of argument types. Closest candidates are: prob_occurrence_module(::Any, ::Any, ::Any) @ BioCCP ~/.julia/packages/BioCCP/QzG6a/src/BioCCP.jl:243 Stacktrace: [1] _broadcast_getindex_evalf @ ./broadcast.jl:702 [inlined] [2] _broadcast_getindex @ ./broadcast.jl:675 [inlined] [3] _getindex @ ./broadcast.jl:698 [inlined] [4] _broadcast_getindex @ ./broadcast.jl:674 [inlined] [5] _getindex @ ./broadcast.jl:619 [inlined] [6] getindex @ ./broadcast.jl:615 [inlined] [7] copy @ ./broadcast.jl:936 [inlined] [8] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(<=), Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(prob_occurrence_module), Tuple{Float64, Vector{Int64}, Int64, Int64}}, Int64}}) @ Base.Broadcast ./broadcast.jl:897 [9] top-level scope @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:5 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [11] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:56 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [13] macro expansion @ ~/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:58 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Test Summary: | Pass Fail Error Total Time BioCCP | 17 2 3 22 14.7s Expectation | 4 1 5 7.5s Standard deviation | 2 1 3 0.2s Success probability | 6 6 1.3s Expected fraction collected | 5 5 1.2s Probability occurence | 3 3 3.5s RNG of the outermost testset: Random.Xoshiro(0xd8ed3d1c30835df2, 0xd7b585b35b3aa5af, 0x56a28768a0c3be9d, 0x9f2dd80bbd1fcc91, 0x6b7b5b9391e4a007) ERROR: LoadError: Some tests did not pass: 17 passed, 2 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/BioCCP.jl:3 in expression starting at /home/pkgeval/.julia/packages/BioCCP/ajPEe/test/runtests.jl:3 Testing failed after 30.12s ERROR: LoadError: Package BioCCP errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 119.81s: package tests unexpectedly errored