Package evaluation to test BigWig on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T15:15:47.890 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.01s ################################################################################ # Installation # Installing BigWig... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [9d649c22] + BigWig v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [67c07d97] + Automa v0.8.4 [19670fab] + BBI v0.2.1 [9d649c22] + BigWig v0.1.0 [37cfa864] + BioCore v2.0.5 [47718e42] + BioGenerics v0.1.5 [e1450e63] + BufferedStreams v1.2.2 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 ⌅ [899a7d2d] + GenomicFeatures v2.1.0 [524e6230] + IntervalTrees v1.1.0 [692b3bcd] + JLLWrappers v1.7.1 [2ec943e9] + Libz v1.0.1 [bac558e1] + OrderedCollections v1.8.1 [21216c6a] + Preferences v1.5.2 [69024149] + StringEncodings v0.3.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [ddb6d928] + YAML v0.4.16 [94ce4f54] + Libiconv_jll v1.18.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 2175.2 ms ✓ BBI 2410.9 ms ✓ BigWig 2 dependencies successfully precompiled in 5 seconds. 31 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 19 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 28.68s ################################################################################ # Testing # Testing BigWig Status `/tmp/jl_tNOZUJ/Project.toml` [19670fab] BBI v0.2.1 [9d649c22] BigWig v0.1.0 [37cfa864] BioCore v2.0.5 [e1450e63] BufferedStreams v1.2.2 [3372ea36] FormatSpecimens v1.4.0 ⌅ [899a7d2d] GenomicFeatures v2.1.0 [2ec943e9] Libz v1.0.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_tNOZUJ/Manifest.toml` ⌅ [67c07d97] Automa v0.8.4 [19670fab] BBI v0.2.1 [9d649c22] BigWig v0.1.0 [37cfa864] BioCore v2.0.5 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [34da2185] Compat v4.18.1 ⌅ [864edb3b] DataStructures v0.18.22 [3372ea36] FormatSpecimens v1.4.0 ⌅ [899a7d2d] GenomicFeatures v2.1.0 [524e6230] IntervalTrees v1.1.0 [692b3bcd] JLLWrappers v1.7.1 [2ec943e9] Libz v1.0.1 [bac558e1] OrderedCollections v1.8.1 [21216c6a] Preferences v1.5.2 [69024149] StringEncodings v0.3.7 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [ddb6d928] YAML v0.4.16 [94ce4f54] Libiconv_jll v1.18.0+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... empty: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:423 [inlined] [2] read @ ./iobuffer.jl:433 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [7] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:10 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:14 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:517 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:585 small: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:18 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:423 [inlined] [2] read @ ./iobuffer.jl:433 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [7] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:19 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:24 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:517 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:585 large: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:96 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:423 [inlined] [2] read @ ./iobuffer.jl:433 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [7] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:97 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:113 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:517 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:585 round trip: Error During Test at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:133 Got exception outside of a @test EOFError: read end of file Stacktrace: [1] peek @ ./iobuffer.jl:423 [inlined] [2] read @ ./iobuffer.jl:433 [inlined] [3] read(io::IOBuffer, ::Type{BBI.Header}) @ BBI ~/.julia/packages/BBI/9fptT/src/header.jl:26 [4] BigWig.Reader(input::IOBuffer) @ BigWig ~/.julia/packages/BigWig/J8jWa/src/reader.jl:34 [5] (::var"#test_round_trip#test_round_trip##0")(filepath::String) @ Main ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:148 [6] top-level scope @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:9 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [8] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:134 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [10] macro expansion @ ~/.julia/packages/BigWig/J8jWa/test/runtests.jl:162 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:517 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [15] _start() @ Base ./client.jl:585 Test Summary: | Error Total Time BigWig | 4 4 1m57.0s empty | 1 1 12.2s small | 1 1 0.7s large | 1 1 0.2s round trip | 1 1 1m43.7s RNG of the outermost testset: Random.Xoshiro(0x8cda41ca148f914e, 0xd024bd1ae7f4c783, 0x4c8a88cba75fd836, 0x40911968f827724d, 0x3ff4d6f3da614100) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 4 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BigWig/J8jWa/test/runtests.jl:8 Testing failed after 132.22s ERROR: LoadError: Package BigWig errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 197.74s: package tests unexpectedly errored