Package evaluation to test AssignTaxonomy on Julia 1.14.0-DEV.1893 (b4aba01002*) started at 2026-03-15T17:37:42.070 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.08s ################################################################################ # Installation # Installing AssignTaxonomy... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [941572e2] + AssignTaxonomy v0.1.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.5.0 [4fba245c] + ArrayInterface v7.23.0 [941572e2] + AssignTaxonomy v0.1.2 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 ⌅ [7e6ae17a] + BioSequences v3.4.2 [3c28c6f8] + BioSymbols v5.2.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [c2308a5c] + FASTX v2.1.7 [615f187c] + IfElse v0.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [445028e4] + Kmers v1.2.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d125e4d3] + ManualMemory v0.1.8 [bac558e1] + OrderedCollections v1.8.1 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [431bcebd] + SciMLPublic v1.0.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.9.0 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.4 [354b36f9] + StringViews v1.3.7 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 9506.9 ms ✓ BioSequences 2391.2 ms ✓ Kmers 2483.0 ms ✓ FASTX → BioSequencesExt 1652.2 ms ✓ Kmers → RandomExt 1512.2 ms ✓ Kmers → StringViewsExt 5851.6 ms ✓ AssignTaxonomy 6 dependencies successfully precompiled in 24 seconds. 55 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 31 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 47.4s ################################################################################ # Testing # Testing AssignTaxonomy Status `/tmp/jl_knDXtW/Project.toml` [941572e2] AssignTaxonomy v0.1.2 ⌅ [7e6ae17a] BioSequences v3.4.2 [c2308a5c] FASTX v2.1.7 [445028e4] Kmers v1.2.0 [f517fe37] Polyester v0.7.19 ⌅ [08abe8d2] PrettyTables v2.4.0 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_knDXtW/Manifest.toml` [79e6a3ab] Adapt v4.5.0 [4fba245c] ArrayInterface v7.23.0 [941572e2] AssignTaxonomy v0.1.2 [67c07d97] Automa v1.1.0 [47718e42] BioGenerics v0.1.5 ⌅ [7e6ae17a] BioSequences v3.4.2 [3c28c6f8] BioSymbols v5.2.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [fb6a15b2] CloseOpenIntervals v0.1.13 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [c2308a5c] FASTX v2.1.7 [615f187c] IfElse v0.1.1 [82899510] IteratorInterfaceExtensions v1.0.0 [445028e4] Kmers v1.2.0 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [d125e4d3] ManualMemory v0.1.8 [bac558e1] OrderedCollections v1.8.1 [f517fe37] Polyester v0.7.19 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 ⌅ [08abe8d2] PrettyTables v2.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [431bcebd] SciMLPublic v1.0.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.9.0 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.4 [354b36f9] StringViews v1.3.7 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.5 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time AssignTaxonomy.jl | 1 1 1m17.1s Testing AssignTaxonomy tests passed Testing completed after 89.5s PkgEval succeeded after 165.88s