Package evaluation to test StochasticGene on Julia 1.14.0-DEV.1871 (50d44f5be7*) started at 2026-03-11T02:05:29.282 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.41s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed OrderedCollections ────────────────── v1.8.1 Installed InlineStrings ─────────────────────── v1.4.5 Installed MultivariateStats ─────────────────── v0.10.4 Installed Optim ─────────────────────────────── v1.13.3 Installed FastPower ─────────────────────────── v1.3.1 Installed PreallocationTools ────────────────── v1.1.2 Installed CpuId ─────────────────────────────── v0.3.1 Installed EnzymeCore ────────────────────────── v0.8.18 Installed OrdinaryDiffEqExponentialRK ───────── v1.13.0 Installed SentinelArrays ────────────────────── v1.4.9 Installed OrdinaryDiffEqRosenbrock ──────────── v1.25.0 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed OrdinaryDiffEqFIRK ────────────────── v1.23.0 Installed Compiler ──────────────────────────── v0.1.1 Installed Revise ────────────────────────────── v3.13.2 Installed NaNMath ───────────────────────────── v1.1.3 Installed StaticArrayInterface ──────────────── v1.9.0 Installed QuadGK ────────────────────────────── v2.11.2 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed OrdinaryDiffEqQPRK ────────────────── v1.8.0 Installed NonlinearSolveBase ────────────────── v2.15.0 Installed LoweredCodeUtils ──────────────────── v3.5.1 Installed Arpack ────────────────────────────── v0.5.4 Installed Tables ────────────────────────────── v1.12.1 Installed NLSolversBase ─────────────────────── v7.10.0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed EnumX ─────────────────────────────── v1.0.7 Installed LinearSolve ───────────────────────── v3.65.0 Installed Reexport ──────────────────────────── v1.2.2 Installed InverseFunctions ──────────────────── v0.1.17 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.10.0 Installed Missings ──────────────────────────── v1.2.0 Installed Static ────────────────────────────── v1.3.1 Installed Jieko ─────────────────────────────── v0.2.1 Installed BracketingNonlinearSolve ──────────── v1.11.0 Installed DiffEqBase ────────────────────────── v6.210.1 Installed Preferences ───────────────────────── v1.5.2 Installed RegistryInstances ─────────────────── v0.1.0 Installed TableTraits ───────────────────────── v1.0.1 Installed NonlinearSolve ────────────────────── v4.16.0 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed Crayons ───────────────────────────── v4.1.1 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed UnPack ────────────────────────────── v1.0.2 Installed MaybeInplace ──────────────────────── v0.1.4 Installed OrdinaryDiffEqNordsieck ───────────── v1.9.0 Installed MacroTools ────────────────────────── v0.5.16 Installed OrdinaryDiffEqLinear ──────────────── v1.10.0 Installed OpenSSH_jll ───────────────────────── v10.2.1+0 Installed ADTypes ───────────────────────────── v1.21.0 Installed RecursiveArrayTools ───────────────── v3.48.0 Installed DataStructures ────────────────────── v0.19.3 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.9.0 Installed GenericSchur ──────────────────────── v0.5.6 Installed DiffResults ───────────────────────── v1.1.0 Installed ManualMemory ──────────────────────── v0.1.8 Installed FillArrays ────────────────────────── v1.16.0 Installed AbstractTrees ─────────────────────── v0.4.5 Installed DelimitedFiles ────────────────────── v1.9.1 Installed CodecZlib ─────────────────────────── v0.7.8 Installed ExprTools ─────────────────────────── v0.1.10 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed StatsBase ─────────────────────────── v0.34.10 Installed DataValueInterfaces ───────────────── v1.0.0 Installed SciMLJacobianOperators ────────────── v0.1.12 Installed SparseMatrixColorings ─────────────── v0.4.24 Installed CommonSubexpressions ──────────────── v0.3.1 Installed LoggingExtras ─────────────────────── v1.2.0 Installed ArrayInterface ────────────────────── v7.23.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed Expat_jll ─────────────────────────── v2.7.3+0 Installed ConcreteStructs ───────────────────── v0.2.3 Installed IrrationalConstants ───────────────── v0.2.6 Installed IOCapture ─────────────────────────── v1.0.0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.11.0 Installed PooledArrays ──────────────────────── v1.4.3 Installed OrdinaryDiffEqRKN ─────────────────── v1.10.0 Installed PDMats ────────────────────────────── v0.11.37 Installed Setfield ──────────────────────────── v1.1.2 Installed OrdinaryDiffEqPRK ─────────────────── v1.8.0 Installed WorkerUtilities ───────────────────── v1.6.1 Installed OrdinaryDiffEqExtrapolation ───────── v1.16.0 Installed NonlinearSolveQuasiNewton ─────────── v1.12.0 Installed CompositionsBase ──────────────────── v0.1.2 Installed DocStringExtensions ───────────────── v0.9.5 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.9.0 Installed CommonSolve ───────────────────────── v0.2.6 Installed Moshi ─────────────────────────────── v0.3.7 Installed ForwardDiff ───────────────────────── v1.3.2 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed VersionParsing ────────────────────── v1.3.0 Installed ZMQ ───────────────────────────────── v1.5.1 Installed DifferentiationInterface ──────────── v0.7.16 Installed OrdinaryDiffEq ────────────────────── v6.108.0 Installed AliasTables ───────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed RecipesBase ───────────────────────── v1.3.4 Installed OrdinaryDiffEqStabilizedRK ────────── v1.8.0 Installed LineSearch ────────────────────────── v0.1.6 Installed CSV ───────────────────────────────── v0.10.16 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed Git_LFS_jll ───────────────────────── v3.7.0+0 Installed DataAPI ───────────────────────────── v1.16.0 Installed SciMLOperators ────────────────────── v1.15.1 Installed InvertedIndices ───────────────────── v1.3.1 Installed Krylov ────────────────────────────── v0.10.6 Installed OrdinaryDiffEqSymplecticRK ────────── v1.11.0 Installed Conda ─────────────────────────────── v1.10.3 Installed OrdinaryDiffEqBDF ─────────────────── v1.22.0 Installed SciMLStructures ───────────────────── v1.10.0 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed StaticArrays ──────────────────────── v1.9.17 Installed StaticArraysCore ──────────────────── v1.4.4 Installed CodeTracking ──────────────────────── v3.0.0 Installed LSODA ─────────────────────────────── v0.7.5 Installed OrdinaryDiffEqLowStorageRK ────────── v1.12.0 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed Documenter ────────────────────────── v1.17.0 Installed SciMLPublic ───────────────────────── v1.0.1 Installed LogExpFunctions ───────────────────── v0.3.29 Installed Requires ──────────────────────────── v1.3.1 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.23.0 Installed OrdinaryDiffEqDifferentiation ─────── v2.2.1 Installed DiffRules ─────────────────────────── v1.15.1 Installed StringManipulation ────────────────── v0.4.4 Installed Distributions ─────────────────────── v0.25.123 Installed FunctionWrappers ──────────────────── v1.1.3 Installed Git_jll ───────────────────────────── v2.53.0+0 Installed Parsers ───────────────────────────── v2.8.3 Installed JSON ──────────────────────────────── v0.21.4 Installed Rmath ─────────────────────────────── v0.9.0 Installed NonlinearSolveFirstOrder ──────────── v2.0.0 Installed OrdinaryDiffEqCore ────────────────── v3.17.0 Installed JuliaInterpreter ──────────────────── v0.10.10 Installed PrettyTables ──────────────────────── v3.2.3 Installed SciMLBase ─────────────────────────── v2.149.0 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed OrdinaryDiffEqExplicitRK ──────────── v1.9.0 Installed StatsFuns ─────────────────────────── v1.5.2 Installed Arpack_jll ────────────────────────── v3.5.2+0 Installed libsodium_jll ─────────────────────── v1.0.21+0 Installed FastClosures ──────────────────────── v0.3.2 Installed FiniteDiff ────────────────────────── v2.29.0 Installed Polyester ─────────────────────────── v0.7.19 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed ZeroMQ_jll ────────────────────────── v4.3.6+0 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.12.0 Installed OrdinaryDiffEqFeagin ──────────────── v1.8.0 Installed DataFrames ────────────────────────── v1.8.1 Installed OrdinaryDiffEqPDIRK ───────────────── v1.11.0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.11.0 Installed ThreadingUtilities ────────────────── v0.5.5 Installed Accessors ─────────────────────────── v0.1.43 Installed OrdinaryDiffEqSDIRK ───────────────── v1.12.0 Installed IJulia ────────────────────────────── v1.34.4 Installed ConstructionBase ──────────────────── v1.6.0 Installed OrdinaryDiffEqDefault ─────────────── v1.13.0 Installed OrdinaryDiffEqVerner ──────────────── v1.11.0 Installed ExponentialUtilities ──────────────── v1.30.0 Installed FilePathsBase ─────────────────────── v0.9.24 Installed RuntimeGeneratedFunctions ─────────── v0.5.17 Installed Adapt ─────────────────────────────── v4.5.0 Installed PositiveFactorizations ────────────── v0.2.4 Installed Compat ────────────────────────────── v4.18.1 Installed Statistics ────────────────────────── v1.11.1 Installed TranscodingStreams ────────────────── v0.11.3 Installed HypergeometricFunctions ───────────── v0.3.28 Installed StrideArraysCore ──────────────────── v0.5.8 Installed StochasticGene ────────────────────── v1.7.2 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed StatsAPI ──────────────────────────── v1.8.0 Installed TimerOutputs ──────────────────────── v0.5.29 Installed ExproniconLite ────────────────────── v0.10.14 Installed CPUSummary ────────────────────────── v0.2.7 Installed ChainRulesCore ────────────────────── v1.26.0 Installed Parameters ────────────────────────── v0.12.3 Installed MarkdownAST ───────────────────────── v0.1.3 Installed PrecompileTools ───────────────────── v1.3.3 Installed LazilyInitializedFields ───────────── v1.3.0 Installed IfElse ────────────────────────────── v0.1.1 Installed MuladdMacro ───────────────────────── v0.2.4 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed SpecialFunctions ──────────────────── v2.7.1 Installed FFTW ──────────────────────────────── v1.10.0 Installed SciMLLogging ──────────────────────── v1.9.1 Installed PtrArrays ─────────────────────────── v1.4.0 Installed SimpleNonlinearSolve ──────────────── v2.11.0 Installed Git ───────────────────────────────── v1.5.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed LineSearches ──────────────────────── v7.5.1 Installed OrdinaryDiffEqTsit5 ───────────────── v1.9.0 Installed OrdinaryDiffEqFunctionMap ─────────── v1.9.0 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installing 13 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Expat 283.3 KiB Installed artifact LSODA 24.9 KiB Installed artifact Arpack 138.3 KiB Installed artifact libsodium 1.6 MiB Installed artifact ZeroMQ 316.1 KiB Installed artifact FFTW 2.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact testfiles 6.2 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Git 49.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [a2598c62] + StochasticGene v1.7.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.23.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.11.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v3.0.0 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.210.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.17.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.18 [d4d017d3] + ExponentialUtilities v1.30.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.10.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [d7ba0133] + Git v1.5.0 [34004b35] + HypergeometricFunctions v0.3.28 [7073ff75] + IJulia v1.34.4 [b5f81e59] + IOCapture v1.0.0 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.10.10 [ba0b0d4f] + Krylov v0.10.6 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [87fe0de2] + LineSearch v0.1.6 ⌃ [d3d80556] + LineSearches v7.5.1 [7ed4a6bd] + LinearSolve v3.65.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [6f1432cf] + LoweredCodeUtils v3.5.1 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.3 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [6f286f6a] + MultivariateStats v0.10.4 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.16.0 [be0214bd] + NonlinearSolveBase v2.15.0 [5959db7a] + NonlinearSolveFirstOrder v2.0.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.108.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 [6ad6398a] + OrdinaryDiffEqBDF v1.22.0 [bbf590c4] + OrdinaryDiffEqCore v3.17.0 [50262376] + OrdinaryDiffEqDefault v1.13.0 [4302a76b] + OrdinaryDiffEqDifferentiation v2.2.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.9.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.13.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.16.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.23.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.12.0 [521117fe] + OrdinaryDiffEqLinear v1.10.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.12.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.23.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.9.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.11.0 [5b33eab2] + OrdinaryDiffEqPRK v1.8.0 [04162be5] + OrdinaryDiffEqQPRK v1.8.0 [af6ede74] + OrdinaryDiffEqRKN v1.10.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.25.0 [2d112036] + OrdinaryDiffEqSDIRK v1.12.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.11.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.11.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] + OrdinaryDiffEqVerner v1.11.0 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v1.1.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.2.3 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.48.0 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.13.2 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.149.0 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.15.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.11.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.24 [276daf66] + SpecialFunctions v2.7.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.9.0 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [a2598c62] + StochasticGene v1.7.2 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.4 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c2297ded] + ZMQ v1.5.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [2e619515] + Expat_jll v2.7.3+0 [f5851436] + FFTW_jll v3.3.11+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aae0fff6] + LSODA_jll v0.1.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/102656c4efc9737f892e1bca7e66ae374c650740/build.log` Installation completed after 69.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4462.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4250.5 ms ✓ MacroTools 1604.9 ms ✓ InlineStrings 774.0 ms ✓ Reexport 1091.2 ms ✓ ConstructionBase 1946.8 ms ✓ IrrationalConstants 758.8 ms ✓ DataValueInterfaces 859.7 ms ✓ StatsAPI 860.6 ms ✓ LazilyInitializedFields 897.9 ms ✓ VersionParsing 812.6 ms ✓ CommonSolve 1266.4 ms ✓ TranscodingStreams 841.5 ms ✓ LaTeXStrings 1121.6 ms ✓ Statistics 1001.7 ms ✓ StaticArraysCore 1270.1 ms ✓ EnzymeCore 774.4 ms ✓ IfElse 831.4 ms ✓ PtrArrays 995.4 ms ✓ ANSIColoredPrinters 899.7 ms ✓ ManualMemory 984.3 ms ✓ PositiveFactorizations 873.8 ms ✓ DataAPI 856.0 ms ✓ SciMLPublic 3591.0 ms ✓ ExproniconLite 812.4 ms ✓ CommonWorldInvalidations 812.2 ms ✓ FastPower 881.2 ms ✓ InvertedIndices 971.1 ms ✓ InverseFunctions 818.1 ms ✓ CompositionsBase 1096.7 ms ✓ AbstractTrees 796.6 ms ✓ MuladdMacro 1013.8 ms ✓ AbstractFFTs 850.3 ms ✓ EnumX 959.2 ms ✓ WorkerUtilities 2193.9 ms ✓ FillArrays 846.1 ms ✓ ExprTools 786.3 ms ✓ UnPack 783.8 ms ✓ ConcreteStructs 1304.8 ms ✓ OrderedCollections 1407.0 ms ✓ FunctionWrappers 1309.8 ms ✓ ADTypes 1065.2 ms ✓ DocStringExtensions 800.2 ms ✓ FastClosures 1614.0 ms ✓ Compiler 776.6 ms ✓ SIMDTypes 752.8 ms ✓ IteratorInterfaceExtensions 1826.2 ms ✓ Crayons 840.5 ms ✓ IOCapture 1399.7 ms ✓ DelimitedFiles 14949.7 ms ✓ Krylov 2488.3 ms ✓ GenericSchur 932.3 ms ✓ NaNMath 1102.9 ms ✓ Requires 1518.0 ms ✓ CpuId 1628.9 ms ✓ PDMats 2329.3 ms ✓ SentinelArrays 1432.0 ms ✓ LoggingExtras 1312.5 ms ✓ CodeTracking 888.9 ms ✓ Compat 1068.6 ms ✓ Preferences 1484.6 ms ✓ CommonSubexpressions 776.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3969.5 ms ✓ RegistryInstances 740.1 ms ✓ CodecZlib 1086.5 ms ✓ Statistics → SparseArraysExt 666.8 ms ✓ DiffResults 746.9 ms ✓ AliasTables 1517.1 ms ✓ ThreadingUtilities 799.7 ms ✓ Missings 875.4 ms ✓ PooledArrays 2978.2 ms ✓ Jieko 937.6 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1253.0 ms ✓ InverseFunctions → InverseFunctionsTestExt 653.8 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1392.5 ms ✓ MarkdownAST 3211.2 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1465.1 ms ✓ FillArrays → FillArraysSparseArraysExt 811.5 ms ✓ FillArrays → FillArraysStatisticsExt 2334.8 ms ✓ TimerOutputs 897.0 ms ✓ RuntimeGeneratedFunctions 1007.8 ms ✓ Parameters 3262.6 ms ✓ DataStructures 709.4 ms ✓ FunctionWrappersWrappers 678.2 ms ✓ ADTypes → ADTypesConstructionBaseExt 1740.2 ms ✓ DifferentiationInterface 740.2 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1299.3 ms ✓ LogExpFunctions 630.9 ms ✓ TableTraits 850.9 ms ✓ Adapt 1172.9 ms ✓ FillArrays → FillArraysPDMatsExt 7850.2 ms ✓ JuliaInterpreter 656.1 ms ✓ Compat → CompatLinearAlgebraExt 936.7 ms ✓ PrecompileTools 1208.2 ms ✓ JLLWrappers 1815.0 ms ✓ TruncatedStacktraces 1768.0 ms ✓ SciMLLogging 2573.8 ms ✓ Setfield 12675.1 ms ✓ Moshi 4660.6 ms ✓ Accessors 1062.1 ms ✓ SortingAlgorithms 1855.0 ms ✓ QuadGK 1291.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 659.3 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1574.9 ms ✓ Tables 1051.1 ms ✓ ArrayInterface 1084.9 ms ✓ Adapt → AdaptSparseArraysExt 1004.4 ms ✓ GPUArraysCore 724.1 ms ✓ EnzymeCore → AdaptExt 13573.5 ms ✓ LoweredCodeUtils 2404.4 ms ✓ ChainRulesCore 2228.5 ms ✓ FilePathsBase 3554.2 ms ✓ StringManipulation 11367.0 ms ✓ StaticArrays 2790.1 ms ✓ RecipesBase 12855.3 ms ✓ Parsers 6451.1 ms ✓ Static 10648.4 ms ✓ SparseMatrixColorings 2054.3 ms ✓ libsodium_jll 1895.8 ms ✓ Rmath_jll 1671.8 ms ✓ OpenSpecFun_jll 3756.5 ms ✓ IntelOpenMP_jll 4314.8 ms ✓ oneTBB_jll 1719.4 ms ✓ Arpack_jll 1662.5 ms ✓ Git_LFS_jll 1860.3 ms ✓ FFTW_jll 2058.9 ms ✓ OpenSSH_jll 1682.0 ms ✓ LSODA_jll 1729.9 ms ✓ Libiconv_jll 1655.2 ms ✓ Expat_jll 1550.5 ms ✓ Accessors → TestExt 2128.4 ms ✓ Accessors → LinearAlgebraExt 3546.9 ms ✓ StatsBase 747.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1601.2 ms ✓ MaybeInplace 1084.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1539.0 ms ✓ SciMLStructures 2406.3 ms ✓ PreallocationTools 674.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 675.4 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 9715.7 ms ✓ Revise 1130.0 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 991.5 ms ✓ EnzymeCore → EnzymeCoreChainRulesCoreExt 731.4 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 639.5 ms ✓ ADTypes → ADTypesChainRulesCoreExt 708.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2609.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 675.9 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2327.7 ms ✓ FilePathsBase → FilePathsBaseTestExt 1014.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 31030.8 ms ✓ PrettyTables 1466.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1513.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1359.3 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1574.0 ms ✓ FillArrays → FillArraysStaticArraysExt 1350.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1289.6 ms ✓ Adapt → AdaptStaticArraysExt 1423.4 ms ✓ Accessors → StaticArraysExt 3417.2 ms ✓ JSON 1197.0 ms ✓ InlineStrings → ParsersExt 1067.5 ms ✓ BitTwiddlingConvenienceFunctions 2604.2 ms ✓ CPUSummary 6707.5 ms ✓ StaticArrayInterface 1763.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1733.5 ms ✓ ZeroMQ_jll 1466.8 ms ✓ Rmath 4303.1 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 8481.8 ms ✓ MKL_jll 1439.8 ms ✓ Arpack 2099.3 ms ✓ Git_jll 4714.9 ms ✓ SciMLOperators 1573.7 ms ✓ PDMats → StatsBaseExt 1470.6 ms ✓ FiniteDiff 4081.8 ms ✓ SymbolicIndexingInterface 1437.1 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 41822.1 ms ✓ ExponentialUtilities 4303.4 ms ✓ Revise → DistributedExt 82032.2 ms ✓ DataFrames 2002.1 ms ✓ Conda 2847.0 ms ✓ WeakRefStrings 2011.7 ms ✓ PolyesterWeave 1968.5 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1455.2 ms ✓ CloseOpenIntervals 1686.7 ms ✓ LayoutPointers 6003.6 ms ✓ ZMQ 4582.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 5488.5 ms ✓ FastGaussQuadrature 2639.6 ms ✓ HypergeometricFunctions 1294.7 ms ✓ DiffRules 7617.9 ms ✓ FFTW 1273.1 ms ✓ Git 1319.2 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1859.1 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1685.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1412.3 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 962.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3543.0 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 7986.6 ms ✓ RecursiveArrayTools 6776.4 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 24751.8 ms ✓ CSV 2282.0 ms ✓ StrideArraysCore 15994.4 ms ✓ IJulia 3061.2 ms ✓ StatsFuns 6814.7 ms ✓ ForwardDiff 43092.9 ms ✓ Documenter 2040.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1632.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 1585.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 2146.1 ms ✓ Polyester 20425.5 ms ✓ IJulia → IJuliaReviseExt 4150.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1423.3 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9638.3 ms ✓ Distributions 1982.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1434.5 ms ✓ FastPower → FastPowerForwardDiffExt 1729.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2984.0 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1775.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 29811.4 ms ✓ SciMLBase 2253.8 ms ✓ FastBroadcast 3656.3 ms ✓ Distributions → DistributionsTestExt 3435.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 3859.8 ms ✓ MultivariateStats 2331.7 ms ✓ NLSolversBase 4210.6 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 4358.0 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 3555.6 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 4557.0 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2672.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 2722.4 ms ✓ LineSearches 19772.0 ms ✓ LinearSolve 8768.4 ms ✓ SciMLJacobianOperators 6689.6 ms ✓ Optim 10035.6 ms ✓ LinearSolve → LinearSolveSparseArraysExt 7833.8 ms ✓ LinearSolve → LinearSolveForwardDiffExt 13156.7 ms ✓ LineSearch 20146.3 ms ✓ NonlinearSolveBase 5246.6 ms ✓ LinearSolve → LinearSolveEnzymeExt 3865.9 ms ✓ LineSearch → LineSearchLineSearchesExt 4273.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4427.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3621.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 4835.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 3634.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 4520.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 9693.7 ms ✓ BracketingNonlinearSolve 30274.8 ms ✓ NonlinearSolveQuasiNewton 19433.8 ms ✓ NonlinearSolveSpectralMethods 49985.3 ms ✓ NonlinearSolveFirstOrder 4248.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 8612.1 ms ✓ DiffEqBase 6397.3 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 5052.1 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 4170.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 20082.5 ms ✓ SimpleNonlinearSolve 4950.6 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4316.7 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4743.6 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 7075.5 ms ✓ LSODA 14295.8 ms ✓ OrdinaryDiffEqCore 4725.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 5594.0 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreSparseArraysExt 8632.7 ms ✓ OrdinaryDiffEqStabilizedRK 6177.8 ms ✓ OrdinaryDiffEqFunctionMap 59636.0 ms ✓ OrdinaryDiffEqVerner 7025.7 ms ✓ OrdinaryDiffEqQPRK 6742.2 ms ✓ OrdinaryDiffEqSymplecticRK 9562.3 ms ✓ OrdinaryDiffEqLowOrderRK 7468.0 ms ✓ OrdinaryDiffEqFeagin 9388.4 ms ✓ OrdinaryDiffEqSSPRK 6876.1 ms ✓ OrdinaryDiffEqRKN 6502.0 ms ✓ OrdinaryDiffEqHighOrderRK 5214.0 ms ✓ OrdinaryDiffEqExplicitRK 11097.2 ms ✓ OrdinaryDiffEqTsit5 5335.1 ms ✓ OrdinaryDiffEqPRK 10141.5 ms ✓ OrdinaryDiffEqLowStorageRK 38883.8 ms ✓ NonlinearSolve 10532.1 ms ✓ OrdinaryDiffEqLinear 12653.3 ms ✓ OrdinaryDiffEqDifferentiation 7821.4 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 6406.4 ms ✓ OrdinaryDiffEqNordsieck 6555.8 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 13554.6 ms ✓ OrdinaryDiffEqExtrapolation 44544.9 ms ✓ OrdinaryDiffEqRosenbrock 13753.7 ms ✓ OrdinaryDiffEqExponentialRK 13543.8 ms ✓ OrdinaryDiffEqNonlinearSolve 12772.4 ms ✓ OrdinaryDiffEqIMEXMultistep 12427.5 ms ✓ OrdinaryDiffEqStabilizedIRK 12882.8 ms ✓ OrdinaryDiffEqPDIRK 14626.0 ms ✓ OrdinaryDiffEqSDIRK 52964.3 ms ✓ OrdinaryDiffEqFIRK 31094.3 ms ✓ OrdinaryDiffEqBDF 64947.9 ms ✓ OrdinaryDiffEqDefault 21985.2 ms ✓ OrdinaryDiffEq 45090.8 ms ✓ StochasticGene 293 dependencies successfully precompiled in 1722 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1739.6s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_EkUmek/Project.toml` [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [e30172f5] Documenter v1.17.0 [7a1cc6ca] FFTW v1.10.0 [7073ff75] IJulia v1.34.4 ⌅ [682c06a0] JSON v0.21.4 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.4 ⌅ [429524aa] Optim v1.13.3 [1dea7af3] OrdinaryDiffEq v6.108.0 [295af30f] Revise v3.13.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [a2598c62] StochasticGene v1.7.2 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_EkUmek/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.23.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.11.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v3.0.0 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.210.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.18 [d4d017d3] ExponentialUtilities v1.30.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.34.4 [b5f81e59] IOCapture v1.0.0 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.10 [ba0b0d4f] Krylov v0.10.6 [7f56f5a3] LSODA v0.7.5 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [87fe0de2] LineSearch v0.1.6 ⌃ [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.65.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [6f1432cf] LoweredCodeUtils v3.5.1 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.3 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [6f286f6a] MultivariateStats v0.10.4 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.16.0 [be0214bd] NonlinearSolveBase v2.15.0 [5959db7a] NonlinearSolveFirstOrder v2.0.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.108.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 [6ad6398a] OrdinaryDiffEqBDF v1.22.0 [bbf590c4] OrdinaryDiffEqCore v3.17.0 [50262376] OrdinaryDiffEqDefault v1.13.0 [4302a76b] OrdinaryDiffEqDifferentiation v2.2.1 [9286f039] OrdinaryDiffEqExplicitRK v1.9.0 [e0540318] OrdinaryDiffEqExponentialRK v1.13.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.16.0 [5960d6e9] OrdinaryDiffEqFIRK v1.23.0 [101fe9f7] OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.12.0 [521117fe] OrdinaryDiffEqLinear v1.10.0 [1344f307] 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[0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Warmup Sampling Histogram count: 6774.0 Warmup ┌ Info: Updated proposal covariance (scaled) │ proposalcv = │ 3×3 Matrix{Float64}: │ 0.105444 0.159736 0.0541459 │ 0.159736 2.46709 2.27088 └ 0.0541459 2.27088 2.22333 Sampling Sampling Warmup Sampling Warmup Sampling 0.20009053870529653 initial: [0.01, 0.01, 0.1, 0.15, 0.1, 1.0, 50.0, 5.0, 50.0, 5.0] Warmup Sampling 418 862 No rate file, set rate to prior Warmup Sampling Warmup Sampling 314 881 StochasticGene: Test Failed at /home/pkgeval/.julia/packages/StochasticGene/586ID/test/runtests.jl:35 Expression: lower <= target <= upper Evaluated: [0.01000925495375939, 0.009862195780587188, 0.08348938730230807, 0.08608909817273469] <= [0.01, 0.01, 0.1, 0.1] <= [0.01376953015347289, 0.011254748667541278, 0.10251463365215185, 0.10061819573197289] Stacktrace: [1] top-level scope @ ~/.julia/packages/StochasticGene/586ID/test/runtests.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/StochasticGene/586ID/test/runtests.jl:35 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] Warmup Sampling ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1168 running 1 of 1 signal (10): User defined signal 1 gc_setmark_pool_ at /source/src/gc-stock.c:298 [inlined] gc_setmark_pool at /source/src/gc-stock.c:315 [inlined] gc_setmark at /source/src/gc-stock.c:322 [inlined] gc_mark_outrefs at /source/src/gc-stock.c:2481 [inlined] gc_mark_and_steal at /source/src/gc-stock.c:2578 _jl_gc_collect at /source/src/gc-stock.c:3098 ijl_gc_collect at /source/src/gc-stock.c:3523 maybe_collect at /source/src/gc-stock.c:357 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:734 ijl_gc_small_alloc at /source/src/gc-stock.c:783 Array at ./boot.jl:715 [inlined] Array at ./boot.jl:727 [inlined] similar at ./array.jl:407 [inlined] similar at ./abstractarray.jl:832 [inlined] similar at ./abstractarray.jl:821 [inlined] _unsafe_getindex at ./multidimensional.jl:996 [inlined] _getindex at ./multidimensional.jl:984 [inlined] getindex at ./abstractarray.jl:1356 [inlined] forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:973 forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1059 [inlined] _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1647 unknown function (ip: 0x723b0dd9bd92) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1842 unknown function (ip: 0x723b0dd92d45) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:530 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:535 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:584 unknown function (ip: 0x723b0dda0500) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:478 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:468 unknown function (ip: 0x723b0dda5ded) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:322 run_mh at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:130 [inlined] #test_fit_tracejoint#375 at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:404 test_fit_tracejoint at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:396 unknown function (ip: 0x723b0dd61ebf) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x723b5e893249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000074c333ec7850 Total snapshots: 485. Utilization: 0% ╎485 @Base/task.jl:1168 wait_forever() 484╎ 485 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 [1168] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StochasticGene/586ID/test/runtests.jl:11 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 32306468 (Pool: 32305342; Big: 1126); GC: 33 == at ./promotion.jl:637 [inlined] iterate at ./range.jl:925 [inlined] forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:971 forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1059 [inlined] _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1647 unknown function (ip: 0x723b0dd9bd92) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1842 unknown function (ip: 0x723b0dd92d45) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:530 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:535 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:584 unknown function (ip: 0x723b0dda0500) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:478 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:468 unknown function (ip: 0x723b0dda5ded) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:322 run_mh at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:130 [inlined] #test_fit_tracejoint#375 at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:404 test_fit_tracejoint at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:396 unknown function (ip: 0x723b0dd61ebf) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3131 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 _include at ./loading.jl:3191 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4339 jl_apply at /source/src/julia.h:2300 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x723b5e893249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 5510128892 (Pool: 5510127520; Big: 1372); GC: 4210 PkgEval terminated after 2722.83s: test duration exceeded the time limit