Package evaluation to test SCTransform on Julia 1.14.0-DEV.1871 (50d44f5be7*) started at 2026-03-08T18:16:27.290 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.65s ################################################################################ # Installation # Installing SCTransform... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed CommonSolve ───────────────── v0.2.6 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.16.0 Installed DataStructures ────────────── v0.19.3 Installed ForwardDiff ───────────────── v1.3.2 Installed StableHashTraits ──────────── v2.0.2 Installed DelimitedFiles ────────────── v1.9.1 Installed ConstructionBase ──────────── v1.6.0 Installed AliasTables ───────────────── v1.1.3 Installed CodecZlib ─────────────────── v0.7.8 Installed StatsBase ─────────────────── v0.34.10 Installed Adapt ─────────────────────── v4.5.0 Installed SCTransform ───────────────── v0.3.1 Installed Optim ─────────────────────── v1.13.3 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed TranscodingStreams ────────── v0.11.3 Installed ArrayInterface ────────────── v7.23.0 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.8.0 Installed StaticArraysCore ──────────── v1.4.4 Installed TupleTools ────────────────── v1.6.0 Installed IrrationalConstants ───────── v0.2.6 Installed CommonSubexpressions ──────── v0.3.1 Installed NaNMath ───────────────────── v1.1.3 Installed ProgressMeter ─────────────── v1.11.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed DiffRules ─────────────────── v1.15.1 Installed Tables ────────────────────── v1.12.1 Installed LogExpFunctions ───────────── v0.3.29 Installed FiniteDiff ────────────────── v2.29.0 Installed PtrArrays ─────────────────── v1.4.0 Installed Requires ──────────────────── v1.3.1 Installed Roots ─────────────────────── v2.2.13 Installed NLSolversBase ─────────────── v7.10.0 Installed EnumX ─────────────────────── v1.0.7 Installed InverseFunctions ──────────── v0.1.17 Installed Missings ──────────────────── v1.2.0 Installed SpecialFunctions ──────────── v2.7.1 Installed Setfield ──────────────────── v1.1.2 Installed Scratch ───────────────────── v1.3.0 Installed Preferences ───────────────── v1.5.2 Installed TableTraits ───────────────── v1.0.1 Installed JLLWrappers ───────────────── v1.7.1 Installed LineSearches ──────────────── v7.5.1 Installed ADTypes ───────────────────── v1.21.0 Installed DocStringExtensions ───────── v0.9.5 Installed KernelDensitySJ ───────────── v0.2.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Accessors ─────────────────── v0.1.43 Installed StructTypes ───────────────── v1.11.0 Installed DifferentiationInterface ──── v0.7.16 Installing 1 artifacts Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [f56ea72b] + SCTransform v0.3.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.23.0 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [49dc5b4e] + KernelDensitySJ v0.2.2 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [85a6dd25] + PositiveFactorizations v0.2.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.13 [f56ea72b] + SCTransform v0.3.1 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [c5dd0088] + StableHashTraits v2.0.2 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95972d] + TupleTools v1.6.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 9.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4782.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ┌ Warning: Ignoring incompatible compat entry `SHA = "0.7"` in "/tmp/jl_xYGI1e/Project.toml". │ SHA is a non-upgradable standard library with version 1.0.0 in the current Julia version. │ Fix by setting compat to "0.7, 1" to mark support of the current version 1.0.0. └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:520 Precompiling package dependencies... Precompiling packages... 4427.4 ms ✓ MacroTools 1739.6 ms ✓ InlineStrings 824.9 ms ✓ Reexport 1065.8 ms ✓ PositiveFactorizations 922.4 ms ✓ DataAPI 1220.7 ms ✓ Statistics 1257.8 ms ✓ ConstructionBase 2287.2 ms ✓ IrrationalConstants 825.3 ms ✓ DataValueInterfaces 1040.3 ms ✓ StaticArraysCore 928.9 ms ✓ StatsAPI 1307.9 ms ✓ Requires 1400.8 ms ✓ OrderedCollections 926.8 ms ✓ InvertedIndices 983.5 ms ✓ StableRNGs 995.2 ms ✓ InverseFunctions 1531.3 ms ✓ ADTypes 908.1 ms ✓ CompositionsBase 1169.7 ms ✓ DocStringExtensions 930.5 ms ✓ EnumX 2416.5 ms ✓ FillArrays 855.1 ms ✓ PtrArrays 848.2 ms ✓ CommonSolve 1437.3 ms ✓ TranscodingStreams 1057.8 ms ✓ TupleTools 827.8 ms ✓ IteratorInterfaceExtensions 903.2 ms ✓ LaTeXStrings 2031.6 ms ✓ Crayons 1143.3 ms ✓ NaNMath 1062.2 ms ✓ DelimitedFiles 1893.3 ms ✓ ProgressMeter 2624.0 ms ✓ SentinelArrays 1263.3 ms ✓ Scratch 2154.1 ms ✓ StructTypes 1212.4 ms ✓ Compat 1563.4 ms ✓ Preferences 1816.9 ms ✓ CommonSubexpressions 1041.5 ms ✓ Missings 1096.1 ms ✓ PooledArrays 1557.0 ms ✓ Statistics → SparseArraysExt 856.4 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 942.2 ms ✓ DiffResults 990.4 ms ✓ Adapt 3829.8 ms ✓ DataStructures 1725.8 ms ✓ InverseFunctions → InverseFunctionsTestExt 1362.7 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1999.5 ms ✓ DifferentiationInterface 853.2 ms ✓ ADTypes → ADTypesConstructionBaseExt 866.0 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1409.0 ms ✓ LogExpFunctions 1768.7 ms ✓ FillArrays → FillArraysSparseArraysExt 1089.8 ms ✓ FillArrays → FillArraysStatisticsExt 1040.3 ms ✓ AliasTables 1067.6 ms ✓ CodecZlib 844.7 ms ✓ TableTraits 902.6 ms ✓ Compat → CompatLinearAlgebraExt 1553.7 ms ✓ JLLWrappers 2420.0 ms ✓ MPIPreferences 1299.3 ms ✓ PrecompileTools 3218.6 ms ✓ Setfield 1243.7 ms ✓ ArrayInterface 1553.7 ms ✓ Adapt → AdaptSparseArraysExt 1198.9 ms ✓ SortingAlgorithms 1527.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 5736.6 ms ✓ Accessors 870.2 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 2016.5 ms ✓ Tables 2310.4 ms ✓ libaec_jll 2350.6 ms ✓ Xorg_libpciaccess_jll 2228.4 ms ✓ Libiconv_jll 1581.9 ms ✓ MicrosoftMPI_jll 2196.3 ms ✓ OpenSpecFun_jll 5116.5 ms ✓ MPItrampoline_jll 4190.6 ms ✓ StringManipulation 822.6 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1482.9 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 4960.1 ms ✓ StatsBase 2653.8 ms ✓ Accessors → LinearAlgebraExt 2195.8 ms ✓ Accessors → TestExt 1628.3 ms ✓ StableHashTraits 2248.1 ms ✓ XML2_jll 5741.1 ms ✓ SpecialFunctions 42096.5 ms ✓ PrettyTables 1394.6 ms ✓ FiniteDiff 8010.3 ms ✓ Roots 2516.9 ms ✓ Hwloc_jll 1398.8 ms ✓ DiffRules 89313.2 ms ✓ DataFrames 1556.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1045.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2041.5 ms ✓ KernelDensitySJ 6125.3 ms ✓ MPICH_jll 5405.5 ms ✓ OpenMPI_jll 8197.1 ms ✓ ForwardDiff 6875.2 ms ✓ HDF5_jll 1859.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1717.0 ms ✓ Roots → RootsForwardDiffExt 16717.9 ms ✓ HDF5 2474.5 ms ✓ NLSolversBase 6958.3 ms ✓ SingleCell10x 2963.8 ms ✓ LineSearches 7127.6 ms ✓ Optim 4167.5 ms ✓ SCTransform 103 dependencies successfully precompiled in 362 seconds. 39 already precompiled. Precompilation completed after 399.57s ################################################################################ # Testing # Testing SCTransform ┌ Warning: Ignoring incompatible compat entry `SHA = "0.7"` in "/tmp/jl_zdKMRx/Project.toml". │ SHA is a non-upgradable standard library with version 1.0.0 in the current Julia version. │ Fix by setting compat to "0.7, 1" to mark support of the current version 1.0.0. └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:520 Status `/tmp/jl_zdKMRx/Project.toml` [944b1d66] CodecZlib v0.7.8 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [49dc5b4e] KernelDensitySJ v0.2.2 ⌅ [429524aa] Optim v1.13.3 [92933f4c] ProgressMeter v1.11.0 [f56ea72b] SCTransform v0.3.1 [6c6a2e73] Scratch v1.3.0 [eddce310] SingleCell10x v0.2.2 [276daf66] SpecialFunctions v2.7.1 [c5dd0088] StableHashTraits v2.0.2 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zdKMRx/Manifest.toml` [47edcb42] ADTypes v1.21.0 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.23.0 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.2 [f67ccb44] HDF5 v0.17.2 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [49dc5b4e] KernelDensitySJ v0.2.2 [b964fa9f] LaTeXStrings v1.4.0 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.2.3 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [f2b01f46] Roots v2.2.13 [f56ea72b] SCTransform v0.3.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [eddce310] SingleCell10x v0.2.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [c5dd0088] StableHashTraits v2.0.2 [860ef19b] StableRNGs v1.0.4 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [892a3eda] StringManipulation v0.4.4 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [9d95972d] TupleTools v1.6.0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.13.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.5+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.10+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.5+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Estimating sc parameters: 4%|█ | ETA: 0:05:02 Estimating sc parameters: 6%|█▌ | ETA: 0:03:30 Estimating sc parameters: 100%|█████████████████████████| Time: 0:00:13 Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/OgRBw/test/runtests.jl:115 Expression: ≈(preg.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266168334, -2.4601871451391686, -5.423359150746391, -6.363339683871518, -5.4879363323633825, -5.32426920185274, -7.796807560919885, -7.823321681383696, -7.823367807779296, -5.188992119819292 … -7.834398223694112, -7.787025109073769, -6.699618709558489, -6.209113450763867, -3.897959026002585, -6.740910353727425, -5.307016057649326, -5.622193904442095, -5.611753220129013, -7.807912158853371] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2324 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:87 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:115 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [ Info: Bandwidth 0.2601508521793458 Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/OgRBw/test/runtests.jl:126 Expression: ≈(preg2.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266168334, -2.4601871451391686, -5.423359150746391, -6.363339683871518, -5.4879363323633825, -5.32426920185274, -7.796807560919885, -7.823321681383696, -7.823367807779296, -5.188992119819292 … -7.834398223694112, -7.787025109073769, -6.699618709558489, -6.209113450763867, -3.897959026002585, -6.740910353727425, -5.307016057649326, -5.622193904442095, -5.611753220129013, -7.807912158853371] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2324 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:87 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:126 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/OgRBw/test/runtests.jl:115 Expression: ≈(preg.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266168334, -2.4601871451391686, -5.423359150746391, -6.363339683871518, -5.4879363323633825, -5.32426920185274, -7.796807560919885, -7.823321681383696, -7.823367807779296, -5.188992119819292 … -7.834398223694112, -7.787025109073769, -6.699618709558489, -6.209113450763867, -3.897959026002585, -6.740910353727425, -5.307016057649326, -5.622193904442095, -5.611753220129013, -7.807912158853371] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2324 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:87 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:115 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [ Info: Bandwidth 0.2601508521793458 Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/OgRBw/test/runtests.jl:126 Expression: ≈(preg2.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266168334, -2.4601871451391686, -5.423359150746391, -6.363339683871518, -5.4879363323633825, -5.32426920185274, -7.796807560919885, -7.823321681383696, -7.823367807779296, -5.188992119819292 … -7.834398223694112, -7.787025109073769, -6.699618709558489, -6.209113450763867, -3.897959026002585, -6.740910353727425, -5.307016057649326, -5.622193904442095, -5.611753220129013, -7.807912158853371] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2324 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:87 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/OgRBw/test/runtests.jl:126 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [ Info: Bandwidth 0.2601508521793458 [ Info: Bandwidth 0.2601508521793458 [ Info: Bandwidth 0.2601508521793458 Test Summary: | Pass Fail Total Time SCTransform.jl | 69 4 73 2m03.2s logcellcounts | 3 3 11.0s 500_PBMC_50genes | 66 4 70 1m52.1s TableType=NamedTuple | 28 2 30 1m06.5s Non-regularized | 8 8 27.0s Regularized | 20 2 22 39.5s TableType=DataFrame | 28 2 30 13.3s Non-regularized | 8 8 6.4s Regularized | 20 2 22 6.9s sctransform | 6 6 6.3s feature_mask | 4 4 1.0s RNG of the outermost testset: Xoshiro(0x24d54b8c45b9912a, 0xb1c91db914052252, 0x0ba9d3a71d4c0ccf, 0xca30a60b8e705203, 0xfbd6514bf9577640) ERROR: LoadError: Some tests did not pass: 69 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SCTransform/OgRBw/test/runtests.jl:31 Testing failed after 162.37s ERROR: LoadError: Package SCTransform errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 610.03s: package has test failures