Package evaluation to test PhyNEST on Julia 1.14.0-DEV.1871 (50d44f5be7*) started at 2026-03-09T02:19:05.704 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.01s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Libuuid_jll ───────────────── v2.41.3+0 Installed Cairo_jll ─────────────────── v1.18.5+1 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Functors ──────────────────── v0.3.0 Installed InlineStrings ─────────────── v1.4.5 Installed Optim ─────────────────────── v1.13.3 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed OrderedCollections ────────── v1.8.1 Installed SentinelArrays ────────────── v1.4.9 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed libsass_jll ───────────────── v3.6.6+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed FileIO ────────────────────── v1.18.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed Graphics ──────────────────── v1.1.3 Installed Xorg_libXinerama_jll ──────── v1.1.7+0 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Tables ────────────────────── v1.12.1 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed NLSolversBase ─────────────── v7.10.0 Installed Reexport ──────────────────── v1.2.2 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed TableTraits ───────────────── v1.0.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed EnumX ─────────────────────── v1.0.7 Installed Crayons ───────────────────── v4.1.1 Installed Preferences ───────────────── v1.5.2 Installed DiffResults ───────────────── v1.1.0 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed ADTypes ───────────────────── v1.21.0 Installed Sass ──────────────────────── v0.2.0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.16.0 Installed DelimitedFiles ────────────── v1.9.1 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.33.21 Installed MethodAnalysis ────────────── v1.0.0 Installed Xorg_libXdamage_jll ───────── v1.1.7+0 Installed RoundingIntegers ──────────── v1.1.0 Installed Cairo ─────────────────────── v1.1.1 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed ArrayInterface ────────────── v7.23.0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed libpng_jll ────────────────── v1.6.55+0 Installed IrrationalConstants ───────── v0.2.6 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed BitFlags ──────────────────── v0.1.9 Installed Pixman_jll ────────────────── v0.44.2+0 Installed PooledArrays ──────────────── v1.4.3 Installed IOCapture ─────────────────── v0.2.5 Installed Scratch ───────────────────── v1.3.0 Installed BenchmarkTools ────────────── v1.6.3 Installed Graphene_jll ──────────────── v1.10.8+0 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed PDMats ────────────────────── v0.11.35 Installed FASTX ─────────────────────── v2.1.7 Installed WorkerUtilities ───────────── v1.6.1 Installed Setfield ──────────────────── v1.1.2 Installed BioSequences ──────────────── v3.5.1 Installed DocStringExtensions ───────── v0.9.5 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed StringViews ───────────────── v1.3.7 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed StatsModels ───────────────── v0.6.33 Installed ForwardDiff ───────────────── v1.3.2 Installed AliasTables ───────────────── v1.1.3 Installed MathOptInterface ──────────── v1.49.0 Installed DifferentiationInterface ──── v0.7.16 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed Combinatorics ─────────────── v1.1.0 Installed SIMD ──────────────────────── v3.7.2 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed DataAPI ───────────────────── v1.16.0 Installed Wayland_jll ───────────────── v1.24.0+0 Installed InvertedIndices ───────────── v1.3.1 Installed CSV ───────────────────────── v0.10.16 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Twiddle ───────────────────── v1.1.2 Installed StaticArraysCore ──────────── v1.4.4 Installed GtkObservables ────────────── v2.2.2 Installed Colors ────────────────────── v0.13.1 Installed StaticArrays ──────────────── v1.9.17 Installed Xorg_libxkbfile_jll ───────── v1.2.0+0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed ColorTypes ────────────────── v0.12.1 Installed StringManipulation ────────── v0.4.4 Installed Documenter ────────────────── v0.27.25 Installed Requires ──────────────────── v1.3.1 Installed Git_jll ───────────────────── v2.53.0+0 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Glib_jll ──────────────────── v2.86.3+0 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed Distributions ─────────────── v0.25.123 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed FiniteDiff ────────────────── v2.29.0 Installed StatsFuns ─────────────────── v1.5.2 Installed DocumenterTools ───────────── v0.1.21 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed MutableArithmetics ────────── v1.6.7 Installed DataFrames ────────────────── v1.8.1 Installed PrettyTables ──────────────── v3.2.3 Installed XZ_jll ────────────────────── v5.8.2+0 Installed JLLWrappers ───────────────── v1.7.1 Installed Pango_jll ─────────────────── v1.57.0+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed NLopt ─────────────────────── v0.6.5 Installed GLM ───────────────────────── v1.8.3 Installed FilePathsBase ─────────────── v0.9.24 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed ConstructionBase ──────────── v1.6.0 Installed PhyloNetworks ─────────────── v0.15.3 Installed FlameGraphs ───────────────── v1.1.0 Installed Adapt ─────────────────────── v4.5.0 Installed HypergeometricFunctions ───── v0.3.28 Installed Libmount_jll ──────────────── v2.41.3+0 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed Compat ────────────────────── v4.18.1 Installed Suppressor ────────────────── v0.2.8 Installed PositiveFactorizations ────── v0.2.4 Installed TranscodingStreams ────────── v0.11.3 Installed Statistics ────────────────── v1.11.1 Installed Xorg_libX11_jll ───────────── v1.8.13+0 Installed StatsAPI ──────────────────── v1.8.0 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed BioSymbols ────────────────── v5.2.0 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed CodecBzip2 ────────────────── v0.8.5 Installed PrecompileTools ───────────── v1.3.3 Installed ProfileView ───────────────── v1.10.3 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed PtrArrays ─────────────────── v1.4.0 Installed SpecialFunctions ──────────── v2.7.1 Installed IntervalSets ──────────────── v0.7.13 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Gtk4 ──────────────────────── v0.7.12 Installed Gumbo ─────────────────────── v0.8.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed IndirectArrays ────────────── v1.0.0 Installed Automa ────────────────────── v1.1.0 Installed LineSearches ──────────────── v7.5.1 Installed Xorg_libXext_jll ──────────── v1.3.8+0 Installed Xorg_libXrandr_jll ────────── v1.5.6+0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed ANSIColoredPrinters ───────── v0.0.1 Installed MathProgBase ──────────────── v0.7.8 Installed PhyNEST ───────────────────── v0.1.12 Installing 61 artifacts Installed artifact Rmath 121.9 KiB Installed artifact Wayland 390.6 KiB Installed artifact Libffi 44.2 KiB Installed artifact Pango 2.0 MiB Installed artifact Pixman 372.2 KiB Installed artifact XZ 1.5 MiB Installed artifact NLopt 322.7 KiB Installed artifact Expat 283.3 KiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact Gumbo 703.8 KiB Installed artifact Bzip2 503.5 KiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact Xorg_libXext 286.6 KiB Installed artifact Cairo 2.2 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_libXinerama 25.5 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Glib 7.7 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libxkbfile 91.1 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact XML2 2.5 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact libpng 328.7 KiB Installed artifact Libepoxy 504.4 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact libsass 8.9 MiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_libXrandr 97.3 KiB Installed artifact LERC 272.9 KiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact testfiles 6.2 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libmount 6.5 MiB Installed artifact iso_codes 7.5 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Libiconv 1.9 MiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Libtiff 2.3 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Graphene 223.2 KiB Installed artifact Librsvg 9.3 MiB Installed artifact Xorg_libX11 4.8 MiB Installed artifact Xorg_libXdamage 24.2 KiB Installed artifact GTK4 14.1 MiB Installed artifact Git 49.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.23.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.16 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.7 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.18.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.2 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.12 [8710efd8] + GtkObservables v2.2.2 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.13 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.49.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.2.3 [c46f51b8] + ProfileView v1.10.3 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.4 [354b36f9] + StringViews v1.3.7 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+1 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [7746bdde] + Glib_jll v2.86.3+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.3+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.3+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.7+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.55+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 33.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4757.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4505.0 ms ✓ MacroTools 1680.3 ms ✓ InlineStrings 785.5 ms ✓ Reexport 1182.3 ms ✓ ConstructionBase 2036.4 ms ✓ IrrationalConstants 769.3 ms ✓ DataValueInterfaces 879.4 ms ✓ StatsAPI 1039.0 ms ✓ Observables 842.3 ms ✓ Twiddle 1061.0 ms ✓ IntervalSets 849.0 ms ✓ CEnum 1013.6 ms ✓ Functors 2162.5 ms ✓ Combinatorics 1127.8 ms ✓ StringViews 1315.6 ms ✓ TranscodingStreams 870.3 ms ✓ LaTeXStrings 1148.0 ms ✓ Statistics 1065.9 ms ✓ StaticArraysCore 847.6 ms ✓ Suppressor 865.0 ms ✓ PtrArrays 1044.0 ms ✓ ANSIColoredPrinters 1036.6 ms ✓ PositiveFactorizations 884.6 ms ✓ DataAPI 845.4 ms ✓ InvertedIndices 888.1 ms ✓ BitFlags 885.8 ms ✓ ShiftedArrays 1159.7 ms ✓ AbstractTrees 896.8 ms ✓ EnumX 1047.1 ms ✓ WorkerUtilities 2264.8 ms ✓ FillArrays 853.6 ms ✓ IndirectArrays 883.1 ms ✓ RoundingIntegers 1402.0 ms ✓ OrderedCollections 1424.7 ms ✓ ADTypes 1147.6 ms ✓ DocStringExtensions 762.3 ms ✓ IteratorInterfaceExtensions 1922.4 ms ✓ Crayons 871.7 ms ✓ IOCapture 994.9 ms ✓ DelimitedFiles 1049.2 ms ✓ NaNMath 1233.6 ms ✓ Requires 1974.7 ms ✓ PDMats 2402.0 ms ✓ MathProgBase 1321.6 ms ✓ Scratch 2501.6 ms ✓ SentinelArrays 1202.7 ms ✓ Compat 1635.0 ms ✓ Preferences 12287.5 ms ✓ MutableArithmetics 1735.1 ms ✓ CommonSubexpressions 853.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 836.1 ms ✓ IntervalSets → IntervalSetsRandomExt 782.7 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 984.5 ms ✓ BioGenerics 1009.7 ms ✓ CodecZlib 1573.1 ms ✓ Statistics → SparseArraysExt 3919.6 ms ✓ FixedPointNumbers 822.2 ms ✓ IntervalSets → IntervalSetsStatisticsExt 887.5 ms ✓ DiffResults 1040.4 ms ✓ AliasTables 1001.8 ms ✓ Missings 1061.4 ms ✓ PooledArrays 874.8 ms ✓ LeftChildRightSiblingTrees 1133.8 ms ✓ MethodAnalysis 1680.3 ms ✓ FillArrays → FillArraysSparseArraysExt 1114.6 ms ✓ FillArrays → FillArraysStatisticsExt 782.8 ms ✓ ADTypes → ADTypesConstructionBaseExt 1891.3 ms ✓ DifferentiationInterface 1376.5 ms ✓ LogExpFunctions 792.2 ms ✓ TableTraits 956.0 ms ✓ Adapt 9332.2 ms ✓ FileIO 1624.5 ms ✓ FillArrays → FillArraysPDMatsExt 873.3 ms ✓ Compat → CompatLinearAlgebraExt 1200.7 ms ✓ PrecompileTools 1543.7 ms ✓ JLLWrappers 3026.9 ms ✓ Setfield 2864.9 ms ✓ ColorTypes 1513.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1929.2 ms ✓ Tables 1151.1 ms ✓ ArrayInterface 1479.1 ms ✓ Adapt → AdaptSparseArraysExt 2494.4 ms ✓ FilePathsBase 4568.5 ms ✓ DataStructures 3253.0 ms ✓ BioSymbols 3802.1 ms ✓ StringManipulation 14675.1 ms ✓ SIMD 14333.3 ms ✓ StaticArrays 17650.6 ms ✓ Parsers 2274.7 ms ✓ Libffi_jll 2330.5 ms ✓ LZO_jll 2270.3 ms ✓ Bzip2_jll 2249.3 ms ✓ XZ_jll 2302.4 ms ✓ NLopt_jll 2261.7 ms ✓ Rmath_jll 2234.5 ms ✓ OpenSpecFun_jll 1578.8 ms ✓ Xorg_xtrans_jll 2196.7 ms ✓ libpng_jll 2093.7 ms ✓ iso_codes_jll 1420.6 ms ✓ EpollShim_jll 1545.1 ms ✓ Wayland_protocols_jll 2239.9 ms ✓ Libmount_jll 2209.5 ms ✓ Libuuid_jll 2238.7 ms ✓ FriBidi_jll 2317.3 ms ✓ LERC_jll 2331.3 ms ✓ Git_LFS_jll 2293.7 ms ✓ libsass_jll 2286.3 ms ✓ Gumbo_jll 2331.4 ms ✓ Xorg_libXau_jll 2477.0 ms ✓ OpenSSH_jll 2302.3 ms ✓ hicolor_icon_theme_jll 2319.2 ms ✓ Graphite2_jll 2326.8 ms ✓ LLVMOpenMP_jll 2331.7 ms ✓ Libiconv_jll 2318.9 ms ✓ Xorg_libXdmcp_jll 2345.1 ms ✓ Expat_jll 2349.8 ms ✓ JpegTurbo_jll 1304.6 ms ✓ ColorTypes → StyledStringsExt 8206.4 ms ✓ Colors 806.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1475.9 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 3204.1 ms ✓ FilePathsBase → FilePathsBaseTestExt 1288.6 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1674.5 ms ✓ SortingAlgorithms 2953.1 ms ✓ QuadGK 10456.3 ms ✓ BioSequences 41065.0 ms ✓ PrettyTables 17721.1 ms ✓ Automa 1809.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1791.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1922.3 ms ✓ FillArrays → FillArraysStaticArraysExt 1812.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1750.7 ms ✓ Adapt → AdaptStaticArraysExt 4127.8 ms ✓ JSON 1452.3 ms ✓ InlineStrings → ParsersExt 1531.3 ms ✓ CodecBzip2 2367.7 ms ✓ FreeType2_jll 1912.1 ms ✓ Rmath 5376.2 ms ✓ SpecialFunctions 2394.4 ms ✓ Sass 1514.8 ms ✓ Gumbo 2364.7 ms ✓ adwaita_icon_theme_jll 2164.2 ms ✓ Pixman_jll 2324.0 ms ✓ XML2_jll 2286.2 ms ✓ GettextRuntime_jll 2311.6 ms ✓ Xorg_libxcb_jll 2374.7 ms ✓ Git_jll 2380.6 ms ✓ Wayland_jll 2489.3 ms ✓ Libtiff_jll 1401.4 ms ✓ Graphics 10532.2 ms ✓ FlameGraphs 1368.7 ms ✓ FiniteDiff 5169.5 ms ✓ StatsBase 83190.6 ms ✓ DataFrames 20052.0 ms ✓ FASTX 9684.9 ms ✓ Documenter 3465.8 ms ✓ BenchmarkTools 2832.0 ms ✓ WeakRefStrings 2548.1 ms ✓ Fontconfig_jll 2584.2 ms ✓ HypergeometricFunctions 1361.8 ms ✓ DiffRules 2547.4 ms ✓ Glib_jll 2552.7 ms ✓ Xorg_libX11_jll 1377.5 ms ✓ Git 1874.2 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1569.0 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1064.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2465.8 ms ✓ FASTX → BioSequencesExt 26699.4 ms ✓ CSV 3296.0 ms ✓ StatsFuns 7450.1 ms ✓ ForwardDiff 2309.2 ms ✓ Graphene_jll 2343.3 ms ✓ Xorg_libXfixes_jll 2325.5 ms ✓ Xorg_libXrender_jll 2354.2 ms ✓ Xorg_libXext_jll 2192.5 ms ✓ Xorg_libxkbfile_jll 2304.0 ms ✓ gdk_pixbuf_jll 4363.7 ms ✓ DocumenterTools 5444.4 ms ✓ StatsModels 10325.4 ms ✓ Distributions 2225.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1800.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 78478.8 ms ✓ MathOptInterface 2359.7 ms ✓ Xorg_libXdamage_jll 2337.9 ms ✓ Xorg_libXcursor_jll 2423.8 ms ✓ Xorg_libXrandr_jll 2461.1 ms ✓ Xorg_libXinerama_jll 2382.0 ms ✓ Xorg_libXi_jll 2486.5 ms ✓ Cairo_jll 2394.2 ms ✓ Libglvnd_jll 2367.2 ms ✓ Xorg_xkbcomp_jll 6138.4 ms ✓ GLM 3981.0 ms ✓ Distributions → DistributionsTestExt 2313.6 ms ✓ NLSolversBase 7193.8 ms ✓ NLopt 2397.1 ms ✓ HarfBuzz_jll 2347.3 ms ✓ Libepoxy_jll 1695.0 ms ✓ Xorg_xkeyboard_config_jll 2739.4 ms ✓ LineSearches 28826.1 ms ✓ PhyloNetworks 2387.9 ms ✓ Pango_jll 2379.7 ms ✓ xkbcommon_jll 7491.7 ms ✓ Optim 2983.2 ms ✓ Cairo 2447.1 ms ✓ Librsvg_jll 2543.0 ms ✓ GTK4_jll 7025.8 ms ✓ Optim → OptimMOIExt 50761.0 ms ✓ Gtk4  (julia:879): Gtk-WARNING **: 02:34:54.581: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 25019.4 ms ✓ GtkObservables  (julia:888): Gtk-WARNING **: 02:35:27.721: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 17298.3 ms ✓ ProfileView 22840.2 ms ✓ PhyNEST 210 dependencies successfully precompiled in 920 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ GtkObservables │ (julia:879): Gtk-WARNING **: 02:34:54.581: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ ProfileView │ (julia:888): Gtk-WARNING **: 02:35:27.721: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 942.7s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_8vVxWH/Project.toml` [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [429524aa] Optim v1.13.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.3 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_8vVxWH/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.23.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.16 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.7 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.18.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.2 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.12 [8710efd8] GtkObservables v2.2.2 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.49.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.2.3 [c46f51b8] ProfileView v1.10.3 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [90137ffa] StaticArrays v1.9.17 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.4 [354b36f9] StringViews v1.3.7 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+1 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.53.0+0 [7746bdde] Glib_jll v2.86.3+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.3+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.3+0 [079eb43e] NLopt_jll v2.10.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [2381bf8a] Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.7+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.7+0 [ec84b674] Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.2.0+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b437f822] adwaita_icon_theme_jll v43.0.1+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [059c91fe] hicolor_icon_theme_jll v0.18.0+0 [bf975903] iso_codes_jll v4.18.0+0 [b53b4c65] libpng_jll v1.6.55+0 [47bcb7c8] libsass_jll v3.6.6+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.6s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.1s Test Summary: | Pass Total Time Testing Method-of-moment estimates of speciation times | 1500 1500 0.0s Testing PhyNEST tests passed Testing completed after 50.67s PkgEval succeeded after 1068.6s