Package evaluation to test MRIFiles on Julia 1.14.0-DEV.1871 (50d44f5be7*) started at 2026-03-08T20:14:27.678 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.52s ################################################################################ # Installation # Installing MRIFiles... Resolving package versions... Installed NFFTTools ──────────── v0.2.7 Installed MKL_jll ────────────── v2025.2.0+0 Installed libaec_jll ─────────── v1.1.5+0 Installed MPICH_jll ──────────── v4.3.2+0 Installed LightXML ───────────── v0.9.3 Installed oneTBB_jll ─────────── v2022.0.0+1 Installed MicrosoftMPI_jll ───── v10.1.4+3 Installed HashArrayMappedTries ─ v0.2.0 Installed Compat ─────────────── v4.18.1 Installed IntelOpenMP_jll ────── v2025.2.0+0 Installed AbstractFFTs ───────── v1.5.0 Installed MRIFiles ───────────── v0.3.2 Installed Hwloc_jll ──────────── v2.12.1+0 Installed OpenMPI_jll ────────── v5.0.10+0 Installed XML2_jll ───────────── v2.15.1+0 Installed Reexport ───────────── v1.2.2 Installed FileIO ─────────────── v1.18.0 Installed ScopedValues ───────── v1.5.0 Installed Requires ───────────── v1.3.1 Installed HDF5_jll ───────────── v1.14.6+0 Installed MPIPreferences ─────── v0.1.11 Installed MRIBase ────────────── v0.4.6 Installed FFTW_jll ───────────── v3.3.11+0 Installed JLLWrappers ────────── v1.7.1 Installed Libiconv_jll ───────── v1.18.0+0 Installed FFTW ───────────────── v1.10.0 Installed Preferences ────────── v1.5.2 Installed AbstractNFFTs ──────── v0.9.1 Installed HDF5 ───────────────── v0.17.2 Installed MPItrampoline_jll ──── v5.5.5+0 Installing 7 artifacts Installed artifact libaec 49.6 KiB Installed artifact XML2 2.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Hwloc 3.5 MiB Installed artifact FFTW 2.2 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [5a6f062f] + MRIFiles v0.3.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.9.1 [34da2185] + Compat v4.18.1 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.18.0 [f67ccb44] + HDF5 v0.17.2 [076d061b] + HashArrayMappedTries v0.2.0 [692b3bcd] + JLLWrappers v1.7.1 [9c8b4983] + LightXML v0.9.3 [3da0fdf6] + MPIPreferences v0.1.11 [f7771a9a] + MRIBase v0.4.6 [5a6f062f] + MRIFiles v0.3.2 ⌅ [7424e34d] + NFFTTools v0.2.7 [21216c6a] + Preferences v1.5.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.5.0 [f5851436] + FFTW_jll v3.3.11+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 ⌃ [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.5+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.10+0 [02c8fc9c] + XML2_jll v2.15.1+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 15.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5585.3 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4783.1 ms ✓ MacroTools 825.8 ms ✓ Reexport 1060.5 ms ✓ MappedArrays 962.5 ms ✓ TensorCore 1253.0 ms ✓ ConstructionBase 2268.2 ms ✓ IrrationalConstants 939.3 ms ✓ StatsAPI 1238.9 ms ✓ IterTools 1109.4 ms ✓ IntervalSets 916.1 ms ✓ CEnum 1066.9 ms ✓ Inflate 843.1 ms ✓ CommonSolve 1045.4 ms ✓ ChunkCodecCore 1164.0 ms ✓ StableTasks 1193.8 ms ✓ Statistics 1069.6 ms ✓ StaticArraysCore 979.6 ms ✓ ChunkSplitters 834.7 ms ✓ IfElse 866.5 ms ✓ PtrArrays 877.3 ms ✓ TaskLocalValues 1001.5 ms ✓ ManualMemory 924.9 ms ✓ DataAPI 943.2 ms ✓ SciMLPublic 832.9 ms ✓ RealDot 855.0 ms ✓ CommonWorldInvalidations 822.4 ms ✓ CustomUnitRanges 1094.2 ms ✓ LazyModules 1010.1 ms ✓ InverseFunctions 921.7 ms ✓ CompositionsBase 971.6 ms ✓ ShiftedArrays 1232.8 ms ✓ AbstractTrees 1723.9 ms ✓ InitialValues 1137.8 ms ✓ AbstractFFTs 1082.1 ms ✓ ComputationalResources 938.7 ms ✓ ExprTools 922.0 ms ✓ IndirectArrays 853.9 ms ✓ UnPack 2721.0 ms ✓ Bessels 898.9 ms ✓ RangeArrays 1519.0 ms ✓ OrderedCollections 994.3 ms ✓ HashArrayMappedTries 1190.1 ms ✓ DocStringExtensions 880.3 ms ✓ FastClosures 1759.4 ms ✓ OffsetArrays 839.5 ms ✓ SIMDTypes 1357.6 ms ✓ NaNMath 1338.5 ms ✓ Requires 1979.4 ms ✓ CpuId 1700.0 ms ✓ WoodburyMatrices 1400.6 ms ✓ Scratch 36732.9 ms ✓ Unitful 1988.0 ms ✓ ProgressMeter 1261.8 ms ✓ Compat 1567.5 ms ✓ Preferences 2608.3 ms ✓ TranscodingStreams 5158.3 ms ✓ PkgVersion 861.8 ms ✓ Memoize 3734.3 ms ✓ SimpleTraits 860.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 806.3 ms ✓ IntervalSets → IntervalSetsRandomExt 822.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1082.3 ms ✓ ChunkCodecLibZlib 1258.3 ms ✓ ChunkCodecLibZstd 1575.5 ms ✓ Statistics → SparseArraysExt 4222.9 ms ✓ FixedPointNumbers 1618.7 ms ✓ Distances 828.9 ms ✓ IntervalSets → IntervalSetsStatisticsExt 1023.2 ms ✓ AliasTables 1987.9 ms ✓ ThreadingUtilities 1050.7 ms ✓ Missings 1173.1 ms ✓ Quaternions 1327.9 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1834.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 884.0 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 4729.4 ms ✓ AbstractFFTs → AbstractFFTsTestExt 3442.3 ms ✓ TimerOutputs 1127.9 ms ✓ Parameters 3946.7 ms ✓ DataStructures 970.9 ms ✓ ScopedValues 1435.7 ms ✓ LogExpFunctions 987.4 ms ✓ PaddedViews 927.9 ms ✓ StackViews 943.7 ms ✓ CatIndices 893.4 ms ✓ Ratios 1016.9 ms ✓ Adapt 10143.8 ms ✓ FileIO 1671.8 ms ✓ AxisAlgorithms 2719.9 ms ✓ Unitful → ConstructionBaseUnitfulExt 2941.2 ms ✓ Unitful → PrintfExt 2675.3 ms ✓ Unitful → InverseFunctionsUnitfulExt 2657.7 ms ✓ Unitful → NaNMathExt 907.2 ms ✓ Compat → CompatLinearAlgebraExt 1285.7 ms ✓ PrecompileTools 1591.4 ms ✓ JLLWrappers 2331.4 ms ✓ MPIPreferences 1727.2 ms ✓ CodecZlib 3612.4 ms ✓ BasicInterpolators 3146.2 ms ✓ Setfield 2020.3 ms ✓ AxisArrays 4890.7 ms ✓ ColorTypes 1517.6 ms ✓ Distances → DistancesSparseArraysExt 1437.7 ms ✓ StringDistances 5788.8 ms ✓ Accessors 4494.8 ms ✓ LinearOperators 1261.1 ms ✓ SortingAlgorithms 1723.5 ms ✓ AbstractNFFTs 925.0 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1127.5 ms ✓ MosaicViews 959.4 ms ✓ Ratios → RatiosFixedPointNumbersExt 1229.8 ms ✓ ArrayInterface 1513.3 ms ✓ Adapt → AdaptSparseArraysExt 988.5 ms ✓ TSVD 886.6 ms ✓ OffsetArrays → OffsetArraysAdaptExt 2931.6 ms ✓ ChainRulesCore 16139.5 ms ✓ SIMD 15272.9 ms ✓ StaticArrays 3719.1 ms ✓ RecipesBase 8476.1 ms ✓ Static 51272.6 ms ✓ JLD2 2433.2 ms ✓ Bzip2_jll 2536.8 ms ✓ XZ_jll 2441.7 ms ✓ Hwloc_jll 1623.1 ms ✓ MicrosoftMPI_jll 2466.3 ms ✓ OpenSpecFun_jll 1733.7 ms ✓ Xorg_xtrans_jll 6328.4 ms ✓ IntelOpenMP_jll 2521.5 ms ✓ libpng_jll 6330.6 ms ✓ oneTBB_jll 2433.0 ms ✓ Imath_jll 2440.9 ms ✓ LERC_jll 2445.2 ms ✓ Xorg_libXau_jll 2437.1 ms ✓ FFTW_jll 2486.4 ms ✓ libaec_jll 2479.7 ms ✓ Libiconv_jll 2420.5 ms ✓ Xorg_libXdmcp_jll 2439.4 ms ✓ Giflib_jll 2492.1 ms ✓ JpegTurbo_jll 5776.8 ms ✓ MPItrampoline_jll 2439.3 ms ✓ NIfTI 36522.0 ms ✓ Polynomials 1193.3 ms ✓ IntegralArrays 7761.4 ms ✓ Colors 4120.6 ms ✓ ColorVectorSpace 6883.8 ms ✓ QOI 2457.4 ms ✓ Accessors → TestExt 3133.3 ms ✓ Accessors → IntervalSetsExt 3052.1 ms ✓ Accessors → LinearAlgebraExt 3044.2 ms ✓ Accessors → UnitfulExt 5135.2 ms ✓ StatsBase 834.8 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1574.2 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1598.0 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 985.3 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 934.2 ms ✓ Distances → DistancesChainRulesCoreExt 3638.5 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1713.8 ms ✓ LinearOperators → LinearOperatorsChainRulesCoreExt 1062.2 ms ✓ AbstractNFFTs → AbstractNFFTsChainRulesCoreExt 903.3 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 55752.2 ms ✓ TiffImages 4526.0 ms ✓ ArnoldiMethod 3800.0 ms ✓ CoordinateTransformations 1943.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 2035.9 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1984.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 2239.9 ms ✓ RegionTrees 6120.0 ms ✓ Rotations 1933.9 ms ✓ Adapt → AdaptStaticArraysExt 2190.1 ms ✓ Accessors → StaticArraysExt 4637.6 ms ✓ IterativeSolvers 2132.7 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 1345.8 ms ✓ BitTwiddlingConvenienceFunctions 3283.6 ms ✓ CPUSummary 9486.9 ms ✓ StaticArrayInterface 7207.9 ms ✓ JLD2 → UnPackExt 2535.0 ms ✓ libzip_jll 6359.0 ms ✓ MPICH_jll 5707.8 ms ✓ OpenMPI_jll 5869.4 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 11705.3 ms ✓ MKL_jll 2551.9 ms ✓ OpenEXR_jll 2543.6 ms ✓ XML2_jll 2559.8 ms ✓ Xorg_libxcb_jll 2608.8 ms ✓ Ghostscript_jll 2536.6 ms ✓ Libtiff_jll 2508.5 ms ✓ libsixel_jll 4445.7 ms ✓ Polynomials → PolynomialsRecipesBaseExt 3516.6 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 1469.3 ms ✓ Graphics 33363.3 ms ✓ ImageCore 10431.6 ms ✓ ColorSchemes 2222.8 ms ✓ BangBang 8046.8 ms ✓ Roots 9324.6 ms ✓ NearestNeighbors 11670.0 ms ✓ Graphs WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. 5229.4 ms ✓ Interpolations 2629.4 ms ✓ Rotations → RotationsRecipesBaseExt 3082.2 ms ✓ HostCPUFeatures 2608.4 ms ✓ PolyesterWeave 1560.4 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 2282.4 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1578.5 ms ✓ CloseOpenIntervals 1845.1 ms ✓ LayoutPointers 7285.3 ms ✓ HDF5_jll 5052.4 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1863.8 ms ✓ ColorVectorSpace → SpecialFunctionsExt 8381.2 ms ✓ FFTW 7038.4 ms ✓ OpenEXR 1510.2 ms ✓ LightXML 2569.4 ms ✓ Xorg_libX11_jll 2608.1 ms ✓ LittleCMS_jll 5315.0 ms ✓ ImageBase 8216.4 ms ✓ PNGFiles 13045.4 ms ✓ Sixel 10894.9 ms ✓ JpegTurbo 2725.0 ms ✓ OhMyThreads 1626.5 ms ✓ BangBang → BangBangChainRulesCoreExt 2323.2 ms ✓ BangBang → BangBangStaticArraysExt 1640.4 ms ✓ Roots → RootsChainRulesCoreExt 3040.6 ms ✓ Roots → RootsUnitfulExt 4946.1 ms ✓ Clustering 10387.9 ms ✓ MetaGraphs 4145.8 ms ✓ SimpleWeightedGraphs 3927.5 ms ✓ Graphs → GraphsSharedArraysExt 1780.6 ms ✓ TiledIteration 17009.5 ms ✓ VectorizationBase 16462.0 ms ✓ HDF5 1632.6 ms ✓ FFTViews 1787.0 ms ✓ NFFTTools 3910.7 ms ✓ Polynomials → PolynomialsFFTWExt 1932.7 ms ✓ Xorg_libXext_jll 2287.1 ms ✓ OpenJpeg_jll 3575.2 ms ✓ HistogramThresholding 6628.3 ms ✓ ImageAxes 6796.5 ms ✓ ImageTransformations 8303.7 ms ✓ ImageShow 1891.3 ms ✓ OhMyThreads → MarkdownExt 3955.4 ms ✓ SLEEFPirates 88927.4 ms ✓ ImageFiltering 2756.5 ms ✓ MRIBase 7405.3 ms ✓ DSP 2450.4 ms ✓ Libglvnd_jll 6498.4 ms ✓ ImageBinarization 4320.7 ms ✓ ImageMetadata 8136.4 ms ✓ ImageContrastAdjustment 6069.9 ms ✓ LinearOperatorCollection 19649.8 ms ✓ NFFT 39279.3 ms ✓ LoopVectorization 28561.0 ms ✓ ImageCorners 3480.0 ms ✓ MRICoilSensitivities 7625.2 ms ✓ MRIFiles 4109.7 ms ✓ DSP → OffsetArraysExt 6016.6 ms ✓ Wavelets 2537.4 ms ✓ libwebp_jll 8543.7 ms ✓ Netpbm 3472.0 ms ✓ LinearOperatorCollection → LinearOperatorFFTWExt 7056.7 ms ✓ RegularizedLeastSquares 3558.0 ms ✓ LoopVectorization → SpecialFunctionsExt 17846.0 ms ✓ ImageMorphology 5194.9 ms ✓ LinearOperatorCollection → LinearOperatorWaveletExt 8782.2 ms ✓ WebP 2566.5 ms ✓ ImageMagick_jll 3407.6 ms ✓ LinearOperatorCollection → LinearOperatorNFFTExt 6642.0 ms ✓ ImageDistances 17643.9 ms ✓ ImageSegmentation 8008.1 ms ✓ MRIOperators 4951.6 ms ✓ ImageIO 12296.8 ms ✓ ImageMagick 25226.4 ms ✓ ImageQualityIndexes 11570.7 ms ✓ MRIReco 8448.1 ms ✓ TestImages 24519.3 ms ✓ Images 31227.8 ms ✓ ImageUtils 272 dependencies successfully precompiled in 1368 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ Interpolations │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. └ Precompilation completed after 1420.23s ################################################################################ # Testing # Testing MRIFiles Status `/tmp/jl_9E77Ji/Project.toml` [5789e2e9] FileIO v1.18.0 [f67ccb44] HDF5 v0.17.2 [8ad4436d] ImageUtils v0.2.12 [9c8b4983] LightXML v0.9.3 [f7771a9a] MRIBase v0.4.6 [c57eb701] MRICoilSensitivities v0.1.4 [5a6f062f] MRIFiles v0.3.2 [bdf86e05] MRIReco v0.9.2 [189a3867] Reexport v1.2.2 [6c6a2e73] Scratch v1.3.0 [4af54fe1] LazyArtifacts v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_9E77Ji/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7f219486] AbstractNFFTs v0.9.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.23.0 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.8 [26cce99e] BasicInterpolators v0.7.1 [0e736298] Bessels v0.2.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [aafaddc9] CatIndices v0.2.2 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [ae650224] ChunkSplitters v3.2.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [38540f10] CommonSolve v0.2.6 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [150eb455] CoordinateTransformations v0.6.4 [adafc99b] CpuId v0.3.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [717857b8] DSP v0.8.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.10.0 [9aa1b823] FastClosures v0.3.2 [5789e2e9] FileIO v1.18.0 [53c48c17] FixedPointNumbers v0.8.5 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.14.0 [f67ccb44] HDF5 v0.17.2 [076d061b] HashArrayMappedTries v0.2.0 [2c695a8d] HistogramThresholding v0.3.1 [3e5b6fbb] HostCPUFeatures v0.1.18 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [cbc4b850] ImageBinarization v0.3.1 [f332f351] ImageContrastAdjustment v0.3.12 [a09fc81d] ImageCore v0.10.5 [89d5987c] ImageCorners v0.1.3 [51556ac3] ImageDistances v0.2.17 [6a3955dd] ImageFiltering v0.7.12 [82e4d734] ImageIO v0.6.9 [6218d12a] ImageMagick v1.4.2 [bc367c6b] ImageMetadata v0.9.10 [787d08f9] ImageMorphology v0.4.7 [2996bd0c] ImageQualityIndexes v0.3.7 [80713f31] ImageSegmentation v1.10.0 [4e3cecfd] ImageShow v0.3.8 [02fcd773] ImageTransformations v0.10.2 [8ad4436d] ImageUtils v0.2.12 [916415d5] Images v0.26.2 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [1d092043] IntegralArrays v0.1.6 ⌅ [a98d9a8b] Interpolations v0.14.0 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 [b835a17e] JpegTurbo v0.1.6 [10f19ff3] LayoutPointers v0.1.17 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.3 [a4a2c56f] LinearOperatorCollection v2.4.1 [5c8ed15e] LinearOperators v2.13.0 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [3da0fdf6] MPIPreferences v0.1.11 [f7771a9a] MRIBase v0.4.6 [c57eb701] MRICoilSensitivities v0.1.4 [5a6f062f] MRIFiles v0.3.2 [fb1137e3] MRIOperators v0.4.3 [bdf86e05] MRIReco v0.9.2 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.3 [c03570c3] Memoize v0.4.4 ⌅ [626554b9] MetaGraphs v0.8.1 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [efe261a4] NFFT v0.14.3 ⌅ [7424e34d] NFFTTools v0.2.7 [a3a9e032] NIfTI v0.6.1 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.27 [f09324ee] Netpbm v1.1.1 [6fe1bfb0] OffsetArrays v1.17.0 [67456a42] OhMyThreads v0.8.5 [52e1d378] 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v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Downloading artifact: MRIRecoTestData [ Info: The test data is located at /home/pkgeval/.julia/artifacts/4a7a5048b08057bc2e03c69b78296a2eb04edfdd. [ Info: If you want to check the output of the tests, please head to /home/pkgeval/.julia/scratchspaces/00000000-0000-0000-0000-000000000000/tmp. ┌ Info: Read parameters timing │ t1 = 4.52138058 └ t2 = 1.419e-5 ┌ Warning: 1st half of image are the REAL part and 2nd half is the imaginary └ @ MRIFiles ~/.julia/packages/MRIFiles/9hXgx/src/Bruker/Bruker.jl:424 [ Info: Bruker protocol name : T2_RARE Direct Reconstruction... 13%|███▋ | ETA: 0:01:06 Direct Reconstruction... 100%|███████████████████████████| Time: 0:00:10 [ Info: Bruker protocol name : FLASH [ Info: Bruker protocol name : FLASH Direct Reconstruction... 50%|█████████████▌ | ETA: 0:00:07 Direct Reconstruction... 100%|███████████████████████████| Time: 0:00:07 [ Info: Bruker protocol name : FLASH [ Info: read offset not performed (only phase + slice) [ Info: Reconstruction of 3DUTE [ Info: Bruker protocol name : UTE3D BrukerFile Reco: Error During Test at /home/pkgeval/.julia/packages/MRIFiles/9hXgx/test/testBrukerFile.jl:46 Got exception outside of a @test MethodError: no method matching zero(::Type{Any}) This error has been manually thrown, explicitly, so the method may exist but be intentionally marked as unimplemented. Closest candidates are: zero(::Type{Any}) @ Base missing.jl:106 zero(::Type{T}) where T>:Missing @ Base missing.jl:108 zero(!Matched::Type{Union{}}, Any...) @ Base number.jl:365 ... Stacktrace: [1] zero(::Type{Any}) @ Base ./missing.jl:106 [2] _qreltype(::Type{Any}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/qr.jl:341 [3] qr(A::Matrix{Any}, arg::ColumnNorm; kwargs::@Kwargs{}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/qr.jl:424 [4] qr(A::Matrix{Any}, arg::ColumnNorm) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/qr.jl:422 [5] \(A::Adjoint{Float64, Matrix{Float64}}, B::Vector{AbstractFloat}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1243 [6] precomputePolyInterp(win::Function, m::Int64, σ::Float32, T::Type) @ NFFT ~/.julia/packages/NFFT/66xVn/src/precomputation.jl:317 [7] precomputation(k::Matrix{Float32}, N::Tuple{Int64, Int64, Int64}, Ñ::Tuple{Int64, Int64, Int64}, params::NFFT.NFFTParams{Float32, 3}) @ NFFT ~/.julia/packages/NFFT/66xVn/src/precomputation.jl:385 [8] NFFT.NFFTPlan(k::Matrix{Float32}, N::Tuple{Int64, Int64, Int64}; dims::UnitRange{Int64}, fftflags::UInt32, kwargs::@Kwargs{m::Int64, σ::Float64, blocking::Bool}) @ NFFT ~/.julia/packages/NFFT/66xVn/src/implementation.jl:97 [9] NFFTPlan @ ~/.julia/packages/NFFT/66xVn/src/implementation.jl:73 [inlined] [10] macro expansion @ ~/.julia/packages/NFFT/66xVn/src/NFFT.jl:52 [inlined] [11] macro expansion @ ./timing.jl:503 [inlined] [12] #plan_nfft#70 @ ~/.julia/packages/NFFT/66xVn/src/NFFT.jl:51 [inlined] [13] kwcall(::@NamedTuple{m::Int64, σ::Float64, fftflags::UInt32, blocking::Bool}, ::typeof(AbstractNFFTs.plan_nfft), ::NFFT.NFFTBackend, ::Type{Array}, ::Matrix{Float32}, ::Tuple{Int64, Int64, Int64}) @ NFFT ~/.julia/packages/NFFT/66xVn/src/NFFT.jl:49 [14] plan_nfft(::Type, ::Matrix{Float32}, ::Vararg{Any}; kwargs::@Kwargs{m::Int64, σ::Float64, fftflags::UInt32, blocking::Bool}) @ AbstractNFFTs ~/.julia/packages/AbstractNFFTs/xXIFn/src/derived.jl:32 [15] plan_nfft @ ~/.julia/packages/AbstractNFFTs/xXIFn/src/derived.jl:32 [inlined] [16] LinearOperatorNFFTExt.NFFTOpImpl(shape::Tuple{Int64, Int64, Int64}, tr::Matrix{Float32}; toeplitz::Bool, oversamplingFactor::Float64, kernelSize::Int64, S::Type{Vector{ComplexF32}}, kargs::@Kwargs{fftflags::UInt32}) @ LinearOperatorNFFTExt ~/.julia/packages/LinearOperatorCollection/BZigU/ext/LinearOperatorNFFTExt/NFFTOp.jl:44 [17] kwcall(::@NamedTuple{toeplitz::Bool, oversamplingFactor::Float64, kernelSize::Int64, S::DataType, fftflags::UInt32}, ::Type{LinearOperatorNFFTExt.NFFTOpImpl}, shape::Tuple{Int64, Int64, Int64}, tr::Matrix{Float32}) @ LinearOperatorNFFTExt ~/.julia/packages/LinearOperatorCollection/BZigU/ext/LinearOperatorNFFTExt/NFFTOp.jl:41 [18] #NFFTOp#1 @ ~/.julia/packages/LinearOperatorCollection/BZigU/ext/LinearOperatorNFFTExt/NFFTOp.jl:19 [inlined] [19] kwcall(::@NamedTuple{nodes::Matrix{Float32}, shape::Tuple{Int64, Int64, Int64}, S::DataType, fftflags::UInt32}, ::Type{NFFTOp}, ::Type{ComplexF32}) @ LinearOperatorNFFTExt ~/.julia/packages/LinearOperatorCollection/BZigU/ext/LinearOperatorNFFTExt/NFFTOp.jl:16 [20] fourierEncodingOp(shape::Tuple{Int64, Int64, Int64}, tr::Trajectory{Float32}, opName::String; subsampleIdx::Vector{Int64}, slice::Int64, correctionMap::Vector{ComplexF32}, echoImage::Bool, S::Type, copyOpsFn::Function, kargs::@Kwargs{}) @ MRIOperators ~/.julia/packages/MRIOperators/Ul2Uo/src/EncodingOp.jl:167 [21] fourierEncodingOp @ ~/.julia/packages/MRIOperators/Ul2Uo/src/EncodingOp.jl:140 [inlined] [22] #84 @ ./none:-1 [inlined] [23] iterate @ ./generator.jl:48 [inlined] [24] collect(itr::Base.Generator{UnitRange{Int64}, MRIOperators.var"#84#85"{@Kwargs{slice::Int64, correctionMap::Vector{ComplexF32}, S::DataType}, Tuple{Int64, Int64, Int64}, Vector{Vector{Int64}}, Vector{Trajectory{Float32}}}}) @ Base ./array.jl:828 [25] encodingOps_simple(acqData::AcquisitionData{Float32, 3}, shape::Tuple{Int64, Int64, Int64}; kargs::@Kwargs{slice::Int64, correctionMap::Vector{ComplexF32}, S::DataType}) @ MRIOperators ~/.julia/packages/MRIOperators/Ul2Uo/src/EncodingOp.jl:19 [26] kwcall(::@NamedTuple{slice::Int64, correctionMap::Vector{ComplexF32}, S::DataType}, ::typeof(encodingOps_simple), acqData::AcquisitionData{Float32, 3}, shape::Tuple{Int64, Int64, Int64}) @ MRIOperators ~/.julia/packages/MRIOperators/Ul2Uo/src/EncodingOp.jl:15 [27] reconstruction_direct(acqData::AcquisitionData{Float32, 3}, reconSize::Tuple{Int64, Int64, Int64}, weights::Vector{Vector{ComplexF32}}, correctionMap::Vector{ComplexF32}, arrayType::Type{Array}, S::Type) @ MRIReco ~/.julia/packages/MRIReco/XF7fg/src/Reconstruction/DirectReconstruction.jl:31 [28] reconstruction(acqData::AcquisitionData{Float32, 3}, recoParams::Dict{Symbol, Any}) @ MRIReco ~/.julia/packages/MRIReco/XF7fg/src/Reconstruction/Reconstruction.jl:40 [29] macro expansion @ ~/.julia/packages/MRIFiles/9hXgx/test/testBrukerFile.jl:129 [inlined] [30] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [31] macro expansion @ ~/.julia/packages/MRIFiles/9hXgx/test/testBrukerFile.jl:47 [inlined] [32] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [33] top-level scope @ ~/.julia/packages/MRIFiles/9hXgx/test/testBrukerFile.jl:3 [34] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [35] top-level scope @ ~/.julia/packages/MRIFiles/9hXgx/test/runtests.jl:13 [36] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [37] top-level scope @ none:6 [38] eval(m::Module, e::Any) @ Core ./boot.jl:517 [39] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [40] _start() @ Base ./client.jl:585 Test Summary: | Pass Error Total Time BrukerFile | 16 1 17 7m02.0s BrukerFile read parameters | 7 7 5.7s BrukerFile read 2dseq | 3 3 5.4s BrukerFile Reco | 6 1 7 6m50.8s RNG of the outermost testset: Random.Xoshiro(0x2a023893cc8c3ac9, 0x83a075b99add39de, 0x7d45294e1b258846, 0xa20538036ac449ee, 0x9561f05f103d9743) ERROR: LoadError: Some tests did not pass: 16 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MRIFiles/9hXgx/test/testBrukerFile.jl:1 in expression starting at /home/pkgeval/.julia/packages/MRIFiles/9hXgx/test/runtests.jl:13 Testing failed after 494.79s ERROR: LoadError: Package MRIFiles errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1979.09s: package tests unexpectedly errored