Package evaluation to test ExpFamilyPCA on Julia 1.14.0-DEV.1871 (50d44f5be7*) started at 2026-03-08T20:54:48.965 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.9s ################################################################################ # Installation # Installing ExpFamilyPCA... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed CommonSolve ───────────────── v0.2.6 Installed MacroTools ────────────────── v0.5.16 Installed CommonWorldInvalidations ──── v1.0.0 Installed TermInterface ─────────────── v2.0.0 Installed DiffResults ───────────────── v1.1.0 Installed DataStructures ────────────── v0.19.3 Installed ForwardDiff ───────────────── v1.3.2 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.16.0 Installed Bijections ────────────────── v0.2.2 Installed RuntimeGeneratedFunctions ─── v0.5.17 Installed Ghostscript_jll ───────────── v9.55.1+0 Installed Adapt ─────────────────────── v4.5.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed DelimitedFiles ────────────── v1.9.1 Installed Unityper ──────────────────── v0.1.6 Installed AliasTables ───────────────── v1.1.3 Installed Optim ─────────────────────── v1.13.3 Installed DynamicPolynomials ────────── v0.6.4 Installed ExprTools ─────────────────── v0.1.10 Installed OrderedCollections ────────── v1.8.1 Installed StatsBase ─────────────────── v0.34.10 Installed SymbolicIndexingInterface ─── v0.3.46 Installed SymbolicUtils ─────────────── v3.32.0 Installed Compat ────────────────────── v4.18.1 Installed ArrayInterface ────────────── v7.23.0 Installed Combinatorics ─────────────── v1.0.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DomainSets ────────────────── v0.7.16 Installed FunctionWrappersWrappers ──── v0.1.3 Installed DataAPI ───────────────────── v1.16.0 Installed SciMLOperators ────────────── v1.15.1 Installed Statistics ────────────────── v1.11.1 Installed PreallocationTools ────────── v0.4.34 Installed RecipesBase ───────────────── v1.3.4 Installed StatsAPI ──────────────────── v1.8.0 Installed TimerOutputs ──────────────── v0.5.29 Installed OffsetArrays ──────────────── v1.17.0 Installed ExproniconLite ────────────── v0.10.14 Installed PositiveFactorizations ────── v0.2.4 Installed PrecompileTools ───────────── v1.3.3 Installed CommonSubexpressions ──────── v0.3.1 Installed SciMLStructures ───────────── v1.10.0 Installed TaskLocalValues ───────────── v0.1.3 Installed StaticArraysCore ──────────── v1.4.4 Installed LoggingExtras ─────────────── v1.2.0 Installed StaticArrays ──────────────── v1.9.17 Installed ChainRulesCore ────────────── v1.26.0 Installed MultivariatePolynomials ───── v0.5.13 Installed IrrationalConstants ───────── v0.2.6 Installed Distances ─────────────────── v0.10.12 Installed GPUArraysCore ─────────────── v0.2.0 Installed Sobol ─────────────────────── v1.5.0 Installed Symbolics ─────────────────── v6.58.0 Installed IntegerMathUtils ──────────── v0.1.3 Installed NaNMath ───────────────────── v1.1.3 Installed SciMLPublic ───────────────── v1.0.1 Installed QuadGK ────────────────────── v2.11.2 Installed Latexify ──────────────────── v0.16.10 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed FunctionWrappers ──────────── v1.1.3 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed FiniteDiff ────────────────── v2.29.0 Installed StatsFuns ─────────────────── v1.5.2 Installed Requires ──────────────────── v1.3.1 Installed Distributions ─────────────── v0.25.123 Installed NLSolversBase ─────────────── v7.10.0 Installed Reexport ──────────────────── v1.2.2 Installed SciMLBase ─────────────────── v2.148.0 Installed PtrArrays ─────────────────── v1.4.0 Installed EnumX ─────────────────────── v1.0.7 Installed IntervalSets ──────────────── v0.7.13 Installed Jieko ─────────────────────── v0.2.1 Installed SciMLLogging ──────────────── v1.9.1 Installed InverseFunctions ──────────── v0.1.17 Installed MutableArithmetics ────────── v1.6.7 Installed SpecialFunctions ──────────── v2.7.1 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed CompositeTypes ────────────── v0.1.4 Installed Setfield ──────────────────── v1.1.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Preferences ───────────────── v1.5.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed SymbolicLimits ────────────── v0.2.3 Installed LineSearches ──────────────── v7.5.1 Installed Moshi ─────────────────────── v0.3.7 Installed Primes ────────────────────── v0.5.7 Installed PDMats ────────────────────── v0.11.37 Installed Format ────────────────────── v1.3.7 Installed ADTypes ───────────────────── v1.21.0 Installed DocStringExtensions ───────── v0.9.5 Installed RecursiveArrayTools ───────── v3.48.0 Installed Accessors ─────────────────── v0.1.43 Installed ExpFamilyPCA ──────────────── v2.0.3 Installed DifferentiationInterface ──── v0.7.16 Installing 4 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [9c724b78] + ExpFamilyPCA v2.0.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.23.0 [e2ed5e7c] + Bijections v0.2.2 [d360d2e6] + ChainRulesCore v1.26.0 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.4 [4e289a0a] + EnumX v1.0.7 [9c724b78] + ExpFamilyPCA v2.0.3 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [102ac46a] + MultivariatePolynomials v0.5.13 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [85a6dd25] + PositiveFactorizations v0.2.4 ⌃ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.48.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 [0bca4576] + SciMLBase v2.148.0 [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.15.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌅ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.58.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [a759f4b9] + TimerOutputs v0.5.29 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 14.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4761.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4215.1 ms ✓ MacroTools 775.6 ms ✓ Reexport 1155.7 ms ✓ ConstructionBase 1995.8 ms ✓ IrrationalConstants 877.3 ms ✓ StatsAPI 2312.3 ms ✓ Format 1089.4 ms ✓ IntervalSets 2125.9 ms ✓ Combinatorics 860.5 ms ✓ TermInterface 821.0 ms ✓ CommonSolve 895.1 ms ✓ LaTeXStrings 1189.9 ms ✓ Statistics 1028.6 ms ✓ StaticArraysCore 987.8 ms ✓ CompositeTypes 851.5 ms ✓ PtrArrays 832.7 ms ✓ TaskLocalValues 993.0 ms ✓ PositiveFactorizations 901.4 ms ✓ DataAPI 892.1 ms ✓ SciMLPublic 3869.9 ms ✓ ExproniconLite 906.0 ms ✓ CommonWorldInvalidations 999.1 ms ✓ InverseFunctions 879.6 ms ✓ CompositionsBase 1157.6 ms ✓ AbstractTrees 905.1 ms ✓ EnumX 1110.3 ms ✓ Bijections 2329.4 ms ✓ FillArrays 849.8 ms ✓ IntegerMathUtils 942.1 ms ✓ ExprTools 1472.2 ms ✓ OrderedCollections 1526.9 ms ✓ FunctionWrappers 1447.5 ms ✓ ADTypes 1221.7 ms ✓ DocStringExtensions 1764.2 ms ✓ OffsetArrays 861.4 ms ✓ IteratorInterfaceExtensions 1105.1 ms ✓ DelimitedFiles 1106.4 ms ✓ NaNMath 1415.1 ms ✓ Requires 2017.0 ms ✓ PDMats 1490.1 ms ✓ LoggingExtras 1245.8 ms ✓ Compat 1513.1 ms ✓ Preferences 11924.2 ms ✓ MutableArithmetics 1847.9 ms ✓ CommonSubexpressions 828.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 810.2 ms ✓ IntervalSets → IntervalSetsRandomExt 802.9 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1451.9 ms ✓ Statistics → SparseArraysExt 1523.1 ms ✓ Distances 807.1 ms ✓ IntervalSets → IntervalSetsStatisticsExt 887.9 ms ✓ DiffResults 959.7 ms ✓ AliasTables 1003.5 ms ✓ Missings 3094.7 ms ✓ Jieko 1312.8 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1752.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 859.8 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1725.7 ms ✓ FillArrays → FillArraysSparseArraysExt 898.0 ms ✓ FillArrays → FillArraysStatisticsExt 1131.8 ms ✓ Primes 2793.5 ms ✓ TimerOutputs 977.3 ms ✓ RuntimeGeneratedFunctions 3818.5 ms ✓ DataStructures 833.4 ms ✓ FunctionWrappersWrappers 812.1 ms ✓ ADTypes → ADTypesConstructionBaseExt 1764.6 ms ✓ DifferentiationInterface 1462.4 ms ✓ LogExpFunctions 2438.2 ms ✓ Sobol 961.7 ms ✓ Adapt 1670.2 ms ✓ FillArrays → FillArraysPDMatsExt 881.4 ms ✓ Compat → CompatLinearAlgebraExt 1258.0 ms ✓ PrecompileTools 1297.5 ms ✓ JLLWrappers 2280.4 ms ✓ SciMLLogging 1292.6 ms ✓ Unityper 3085.2 ms ✓ Setfield 1498.3 ms ✓ Distances → DistancesSparseArraysExt 17701.2 ms ✓ Moshi 5638.7 ms ✓ Accessors 1214.3 ms ✓ SortingAlgorithms 2457.2 ms ✓ QuadGK 5126.8 ms ✓ MultivariatePolynomials 1384.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 804.9 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1079.3 ms ✓ ArrayInterface 1175.6 ms ✓ Adapt → AdaptSparseArraysExt 1208.5 ms ✓ GPUArraysCore 894.8 ms ✓ OffsetArrays → OffsetArraysAdaptExt 2588.0 ms ✓ ChainRulesCore 13995.3 ms ✓ StaticArrays 3676.9 ms ✓ RecipesBase 2277.9 ms ✓ Rmath_jll 2284.4 ms ✓ OpenSpecFun_jll 2172.2 ms ✓ JpegTurbo_jll 1925.0 ms ✓ Accessors → TestExt 2860.4 ms ✓ Accessors → IntervalSetsExt 2676.8 ms ✓ Accessors → LinearAlgebraExt 4570.4 ms ✓ StatsBase 4797.4 ms ✓ DynamicPolynomials 813.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1427.3 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1978.4 ms ✓ SciMLStructures 2380.1 ms ✓ PreallocationTools 837.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 866.0 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1533.4 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 872.0 ms ✓ ADTypes → ADTypesChainRulesCoreExt 915.1 ms ✓ Distances → DistancesChainRulesCoreExt 967.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3405.2 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 5654.0 ms ✓ MultivariatePolynomials → MultivariatePolynomialsChainRulesCoreExt 929.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1895.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1905.1 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1799.3 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 5403.8 ms ✓ DomainSets 1963.9 ms ✓ FillArrays → FillArraysStaticArraysExt 1912.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1794.8 ms ✓ Adapt → AdaptStaticArraysExt 1940.3 ms ✓ Accessors → StaticArraysExt 1847.4 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 1927.8 ms ✓ Rmath 5240.2 ms ✓ SpecialFunctions 2389.5 ms ✓ Ghostscript_jll 5055.3 ms ✓ SciMLOperators 1658.3 ms ✓ PDMats → StatsBaseExt 1437.7 ms ✓ FiniteDiff 4039.4 ms ✓ SymbolicIndexingInterface 1938.7 ms ✓ DomainSets → DomainSetsRandomExt 4619.2 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2755.2 ms ✓ HypergeometricFunctions 1371.4 ms ✓ DiffRules 6607.2 ms ✓ Latexify 1394.9 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1988.4 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1809.8 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1444.6 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1003.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 8744.5 ms ✓ RecursiveArrayTools 42511.1 ms ✓ SymbolicUtils 3276.1 ms ✓ StatsFuns 7450.2 ms ✓ ForwardDiff 2788.7 ms ✓ Latexify → SparseArraysExt 2371.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1643.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 7196.8 ms ✓ SymbolicLimits 4009.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1352.1 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 10048.3 ms ✓ Distributions 2236.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1789.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1571.5 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1887.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 32306.3 ms ✓ SciMLBase 3988.3 ms ✓ Distributions → DistributionsTestExt 3517.4 ms ✓ Distributions → DistributionsChainRulesCoreExt 2415.0 ms ✓ NLSolversBase 4317.8 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 4211.8 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 3744.9 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 4747.2 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2689.5 ms ✓ LineSearches 57183.2 ms ✓ Symbolics 6483.5 ms ✓ Optim 13658.6 ms ✓ Symbolics → SymbolicsForwardDiffExt 11714.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 12413.3 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 13119.4 ms ✓ ExpFamilyPCA 168 dependencies successfully precompiled in 567 seconds. 21 already precompiled. Precompilation completed after 591.72s ################################################################################ # Testing # Testing ExpFamilyPCA Status `/tmp/jl_G16AnA/Project.toml` [b4f34e82] Distances v0.10.12 [9c724b78] ExpFamilyPCA v2.0.3 [069b7b12] FunctionWrappers v1.1.3 [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [429524aa] Optim v1.13.3 [ed01d8cd] Sobol v1.5.0 [10745b16] Statistics v1.11.1 ⌅ [0c5d862f] Symbolics v6.58.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_G16AnA/Manifest.toml` [47edcb42] ADTypes v1.21.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.23.0 [e2ed5e7c] Bijections v0.2.2 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [7c1d4256] DynamicPolynomials v0.6.4 [4e289a0a] EnumX v1.0.7 [9c724b78] ExpFamilyPCA v2.0.3 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [102ac46a] MultivariatePolynomials v0.5.13 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [85a6dd25] PositiveFactorizations v0.2.4 ⌃ [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.48.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.17 [0bca4576] SciMLBase v2.148.0 [a6db7da4] SciMLLogging v1.9.1 [c0aeaf25] SciMLOperators v1.15.1 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.10.0 [efcf1570] Setfield v1.1.2 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [90137ffa] StaticArrays v1.9.17 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [2efcf032] SymbolicIndexingInterface v0.3.46 ⌅ [19f23fe9] SymbolicLimits v0.2.3 ⌅ [d1185830] SymbolicUtils v3.32.0 ⌅ [0c5d862f] Symbolics v6.58.0 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [a7c27f48] Unityper v0.1.6 [61579ee1] Ghostscript_jll v9.55.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Gamma: Error During Test at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:1 Got exception outside of a @test DomainError with -869.9400649486282: log was called with a negative real argument but will only return a complex result if called with a complex argument. Try log(Complex(x)). DomainError detected in the user `f` function. This occurs when the domain of a function is violated. For example, `log(-1.0)` is undefined because `log` of a real number is defined to only output real numbers, but `log` of a negative number is complex valued and therefore Julia throws a DomainError by default. Cases to be aware of include: * `log(x)`, `sqrt(x)`, `cbrt(x)`, etc. where `x<0` * `x^y` for `x<0` floating point `y` (example: `(-1.0)^(1/2) == im`) Within the context of SciML, this error can occur within the solver process even if the domain constraint would not be violated in the solution due to adaptivity. For example, an ODE solver or optimization routine may check a step at `new_u` which violates the domain constraint, and if violated reject the step and use a smaller `dt`. However, the throwing of this error will have halted the solving process. Thus the recommended fix is to replace this function with the equivalent ones from NaNMath.jl (https://github.com/JuliaMath/NaNMath.jl) which returns a NaN instead of an error. The solver will then effectively use the NaN within the error control routines to reject the out of bounds step. Additionally, one could perform a domain transformation on the variables so that such an issue does not occur in the definition of `f`. For more information, check out the following FAQ page: Stacktrace: [1] throw_complex_domainerror(f::Symbol, x::Float64) @ Base.Math ./math.jl:33 [2] _log @ ./special/log.jl:295 [inlined] [3] log(x::Float64) @ Base.Math ./special/log.jl:261 [4] Bg @ ~/.julia/packages/ExpFamilyPCA/w6PkA/src/family/gamma.jl:30 [inlined] [5] _broadcast_getindex_evalf @ ./broadcast.jl:702 [inlined] [6] _broadcast_getindex @ ./broadcast.jl:675 [inlined] [7] _getindex @ ./broadcast.jl:619 [inlined] [8] getindex @ ./broadcast.jl:615 [inlined] [9] macro expansion @ ./broadcast.jl:998 [inlined] [10] macro expansion @ ./simdloop.jl:77 [inlined] [11] copyto! @ ./broadcast.jl:997 [inlined] [12] copyto! @ ./broadcast.jl:950 [inlined] [13] copy @ ./broadcast.jl:922 [inlined] [14] materialize @ ./broadcast.jl:897 [inlined] [15] (::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"})(x::Vector{Float64}, θ::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/constructors/epca4.jl:19 [16] (::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}})(â::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:122 [17] finite_difference_gradient!(df::Vector{Float64}, f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, x::Vector{Float64}, cache::FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}; relstep::Float64, absstep::Float64, dir::Bool) @ FiniteDiff ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:402 [18] finite_difference_gradient! @ ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:356 [inlined] [19] value_and_gradient! @ ~/.julia/packages/DifferentiationInterface/afUhd/ext/DifferentiationInterfaceFiniteDiffExt/onearg.jl:329 [inlined] [20] (::NLSolversBase.var"#fg!#OnceDifferentiable##1"{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, DifferentiationInterfaceFiniteDiffExt.FiniteDiffGradientPrep{Tuple{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}, Vector{Float64}, Tuple{}}, FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}, Float64, Float64, Bool}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}})(_g::Vector{Float64}, _x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/objective_types/oncedifferentiable.jl:53 [21] value_gradient!!(obj::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/interface.jl:82 [22] value_gradient!!(bw::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:86 [23] initial_state(method::Optim.LBFGS{Optim.InverseDiagonal, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Optim.var"#optimize##0#optimize##1"{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}}}, options::Optim.Options{Float64, Nothing}, d::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, initial_x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/first_order/l_bfgs.jl:168 [24] optimize(df::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, l::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, u::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, initial_x::Vector{Float64}, F::Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, options::Optim.Options{Float64, Nothing}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:456 [25] #optimize#48 @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:395 [inlined] ┌[26] optimize │ @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:381 [inlined] ╰──── repeated 3 times [29] optimize @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:296 [inlined] [30] _optimize(f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, lower::Nothing, upper::Float64, x0::SubArray{Float64, 1, Matrix{Float64}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}}, true}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:91 [31] _single_compress_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:121 [32] _single_fit_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:164 [33] _fit(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, maxiter::Int64, verbose::Bool, steps_per_print::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:245 [34] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}; maxiter::Int64, verbose::Bool, steps_per_print::Int64) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:119 [35] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:109 [36] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:2 [37] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [38] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:8 [inlined] [39] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [40] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:14 [41] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [42] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:17 [inlined] [43] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [44] top-level scope @ none:6 [45] eval(m::Module, e::Any) @ Core ./boot.jl:517 [46] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [47] _start() @ Base ./client.jl:585 ItakuraSaito: Error During Test at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:18 Got exception outside of a @test DomainError with -869.9400649486282: log was called with a negative real argument but will only return a complex result if called with a complex argument. Try log(Complex(x)). DomainError detected in the user `f` function. This occurs when the domain of a function is violated. For example, `log(-1.0)` is undefined because `log` of a real number is defined to only output real numbers, but `log` of a negative number is complex valued and therefore Julia throws a DomainError by default. Cases to be aware of include: * `log(x)`, `sqrt(x)`, `cbrt(x)`, etc. where `x<0` * `x^y` for `x<0` floating point `y` (example: `(-1.0)^(1/2) == im`) Within the context of SciML, this error can occur within the solver process even if the domain constraint would not be violated in the solution due to adaptivity. For example, an ODE solver or optimization routine may check a step at `new_u` which violates the domain constraint, and if violated reject the step and use a smaller `dt`. However, the throwing of this error will have halted the solving process. Thus the recommended fix is to replace this function with the equivalent ones from NaNMath.jl (https://github.com/JuliaMath/NaNMath.jl) which returns a NaN instead of an error. The solver will then effectively use the NaN within the error control routines to reject the out of bounds step. Additionally, one could perform a domain transformation on the variables so that such an issue does not occur in the definition of `f`. For more information, check out the following FAQ page: Stacktrace: [1] throw_complex_domainerror(f::Symbol, x::Float64) @ Base.Math ./math.jl:33 [2] _log @ ./special/log.jl:295 [inlined] [3] log(x::Float64) @ Base.Math ./special/log.jl:261 [4] Bg @ ~/.julia/packages/ExpFamilyPCA/w6PkA/src/family/gamma.jl:30 [inlined] [5] _broadcast_getindex_evalf @ ./broadcast.jl:702 [inlined] [6] _broadcast_getindex @ ./broadcast.jl:675 [inlined] [7] _getindex @ ./broadcast.jl:619 [inlined] [8] getindex @ ./broadcast.jl:615 [inlined] [9] macro expansion @ ./broadcast.jl:998 [inlined] [10] macro expansion @ ./simdloop.jl:77 [inlined] [11] copyto! @ ./broadcast.jl:997 [inlined] [12] copyto! @ ./broadcast.jl:950 [inlined] [13] copy @ ./broadcast.jl:922 [inlined] [14] materialize @ ./broadcast.jl:897 [inlined] [15] (::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"})(x::Vector{Float64}, θ::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/constructors/epca4.jl:19 [16] (::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}})(â::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:122 [17] finite_difference_gradient!(df::Vector{Float64}, f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, x::Vector{Float64}, cache::FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}; relstep::Float64, absstep::Float64, dir::Bool) @ FiniteDiff ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:402 [18] finite_difference_gradient! @ ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:356 [inlined] [19] value_and_gradient! @ ~/.julia/packages/DifferentiationInterface/afUhd/ext/DifferentiationInterfaceFiniteDiffExt/onearg.jl:329 [inlined] [20] (::NLSolversBase.var"#fg!#OnceDifferentiable##1"{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, DifferentiationInterfaceFiniteDiffExt.FiniteDiffGradientPrep{Tuple{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}, Vector{Float64}, Tuple{}}, FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}, Float64, Float64, Bool}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}})(_g::Vector{Float64}, _x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/objective_types/oncedifferentiable.jl:53 [21] value_gradient!!(obj::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/interface.jl:82 [22] value_gradient!!(bw::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:86 [23] initial_state(method::Optim.LBFGS{Optim.InverseDiagonal, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Optim.var"#optimize##0#optimize##1"{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}}}, options::Optim.Options{Float64, Nothing}, d::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, initial_x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/first_order/l_bfgs.jl:168 [24] optimize(df::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, l::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, u::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, initial_x::Vector{Float64}, F::Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, options::Optim.Options{Float64, Nothing}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:456 [25] #optimize#48 @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:395 [inlined] ┌[26] optimize │ @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:381 [inlined] ╰──── repeated 3 times [29] optimize @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:296 [inlined] [30] _optimize(f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, lower::Nothing, upper::Float64, x0::SubArray{Float64, 1, Matrix{Float64}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}}, true}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:91 [31] _single_compress_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:121 [32] _single_fit_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:164 [33] _fit(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, maxiter::Int64, verbose::Bool, steps_per_print::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:245 [34] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}; maxiter::Int64, verbose::Bool, steps_per_print::Int64) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:119 [35] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:109 [36] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:19 [37] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [38] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:25 [inlined] [39] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [40] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:14 [41] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [42] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:17 [inlined] [43] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [44] top-level scope @ none:6 [45] eval(m::Module, e::Any) @ Core ./boot.jl:517 [46] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [47] _start() @ Base ./client.jl:585 Test Summary: | Pass Error Total Time ExpFamilyPCA.jl | 456 2 458 6m08.6s Poisson | 92 92 1m35.6s Gaussian | 92 92 45.4s Bernoulli | 12 12 5.3s Gamma | 1 1 8.9s ItakuraSaito | 1 1 0.2s Binomial | 12 12 5.1s Continuous Bernoulli | 12 12 5.3s Negative Binomial | 12 12 5.7s Pareto | 12 12 8.0s Weibull | 12 12 5.9s Misc Options Tests | 196 196 1m06.7s Positive Domain | 1 1 1m51.0s Negative Domain | 3 3 5.2s RNG of the outermost testset: Xoshiro(0xfff0241072ddab67, 0xc53bc12f4c3f0b4e, 0x56d451780b2dd4ba, 0x50a4aa153d208dd8, 0x3649a58b3b63d5db) ERROR: LoadError: Some tests did not pass: 456 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:13 Testing failed after 398.77s ERROR: LoadError: Package ExpFamilyPCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1044.95s: package tests unexpectedly errored