Package evaluation to test MolecularGraph on Julia 1.14.0-DEV.1851 (d64c0da64c*) started at 2026-03-05T17:16:21.660 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.13s ################################################################################ # Installation # Installing MolecularGraph... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [6c89ec66] + MolecularGraph v0.22.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [411431e0] + Extents v0.1.6 [53c48c17] + FixedPointNumbers v0.8.5 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.13 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [1914dd2f] + MacroTools v0.5.16 [20f20a25] + MakieCore v0.10.0 [6c89ec66] + MolecularGraph v0.22.0 [510215fc] + Observables v0.5.5 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [189a3867] + Reexport v1.2.2 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [ec057cc2] + StructUtils v2.6.3 [ddb6d928] + YAML v0.4.16 [5ae413db] + EarCut_jll v2.2.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 5.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1392.6 ms ✓ libinchi_jll 1421.9 ms ✓ coordgenlibs_jll 23398.8 ms ✓ MolecularGraph 3 dependencies successfully precompiled in 27 seconds. 69 already precompiled. Precompilation completed after 48.84s ################################################################################ # Testing # Testing MolecularGraph Status `/tmp/jl_Tmtd7F/Project.toml` [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.14.0 [682c06a0] JSON v1.4.0 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 [bac558e1] OrderedCollections v1.8.1 [10745b16] Statistics v1.11.1 [ec057cc2] StructUtils v2.6.3 [ddb6d928] YAML v0.4.16 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Tmtd7F/Manifest.toml` [ec485272] ArnoldiMethod v0.4.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [864edb3b] DataStructures v0.19.3 [8bb1440f] DelimitedFiles v1.9.1 [411431e0] Extents v0.1.6 [53c48c17] FixedPointNumbers v0.8.5 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.14.0 [d25df0c9] Inflate v0.1.5 [8197267c] IntervalSets v0.7.13 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [1914dd2f] MacroTools v0.5.16 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 [510215fc] Observables v0.5.5 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [189a3867] Reexport v1.2.2 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.17 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [ec057cc2] StructUtils v2.6.3 [ddb6d928] YAML v0.4.16 [5ae413db] EarCut_jll v2.2.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... Test Summary: | Pass Total Time util.geometry | 26 26 3.7s Test Summary: | Pass Total Time util.iterator | 22 22 2.7s Test Summary: | Pass Total Time util.math | 4 4 0.1s Test Summary: | Pass Total Time operator | 20 20 3.2s Test Summary: | Pass Total Time cycle | 8 8 6.4s Test Summary: | Pass Total Time bipartite | 4 4 2.4s Test Summary: | Pass Total Time matching | 12 12 7.6s Test Summary: | Pass Total Time graph.planarity | 42 42 10.7s max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:10 Test threw exception Expression: (maximum_clique(nullg))[1] == [] UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:10 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:14 Test threw exception Expression: length((maximum_clique(noedges))[1]) == 1 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:14 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:18 Test threw exception Expression: length((maximum_clique(p7))[1]) == 2 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:18 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:22 Test threw exception Expression: length((maximum_clique(k5))[1]) == 5 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:22 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:26 Test threw exception Expression: length((maximum_clique(w8))[1]) == 3 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:26 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:30 Test threw exception Expression: length((maximum_clique(petersen))[1]) == 2 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:30 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:34 Test threw exception Expression: length((maximum_clique(karate))[1]) == 5 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:34 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Test Summary: | Pass Error Total Time clique | 15 7 22 9.0s max_clique | 6 7 13 5.3s max_conn_clique | 9 9 3.7s RNG of the outermost testset: Random.Xoshiro(0x588150b165a85f6d, 0xd0675fa5e006a93f, 0xdaa4f33fe9c0351b, 0x1d2cb63783a18c51, 0xdb292b672fe83ae8) ERROR: LoadError: Some tests did not pass: 15 passed, 0 failed, 7 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:6 in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/runtests.jl:6 Testing failed after 71.26s ERROR: LoadError: Package MolecularGraph errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 155.59s: package tests unexpectedly errored