Package evaluation to test StochasticGene on Julia 1.14.0-DEV.1840 (ab7ba34e40*) started at 2026-03-04T02:44:09.970 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.2s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed FastPower ─────────────────────────── v1.3.1 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed OrderedCollections ────────────────── v1.8.1 Installed InlineStrings ─────────────────────── v1.4.5 Installed MultivariateStats ─────────────────── v0.10.4 Installed PreallocationTools ────────────────── v1.1.2 Installed OrdinaryDiffEqExponentialRK ───────── v1.13.0 Installed Optim ─────────────────────────────── v1.13.3 Installed EnzymeCore ────────────────────────── v0.8.18 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed OrdinaryDiffEqRosenbrock ──────────── v1.25.0 Installed Compiler ──────────────────────────── v0.1.1 Installed SentinelArrays ────────────────────── v1.4.9 Installed NaNMath ───────────────────────────── v1.1.3 Installed QuadGK ────────────────────────────── v2.11.2 Installed OrdinaryDiffEqFIRK ────────────────── v1.23.0 Installed StaticArrayInterface ──────────────── v1.9.0 Installed Revise ────────────────────────────── v3.13.2 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed OrdinaryDiffEqQPRK ────────────────── v1.8.0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed Arpack ────────────────────────────── v0.5.4 Installed Tables ────────────────────────────── v1.12.1 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.10.0 Installed NLSolversBase ─────────────────────── v7.10.0 Installed NonlinearSolveBase ────────────────── v2.15.0 Installed LoweredCodeUtils ──────────────────── v3.5.1 Installed EnumX ─────────────────────────────── v1.0.7 Installed BracketingNonlinearSolve ──────────── v1.11.0 Installed Reexport ──────────────────────────── v1.2.2 Installed DiffEqBase ────────────────────────── v6.210.1 Installed InverseFunctions ──────────────────── v0.1.17 Installed Jieko ─────────────────────────────── v0.2.1 Installed Missings ──────────────────────────── v1.2.0 Installed LinearSolve ───────────────────────── v3.62.0 Installed RegistryInstances ─────────────────── v0.1.0 Installed Static ────────────────────────────── v1.3.1 Installed Preferences ───────────────────────── v1.5.2 Installed NonlinearSolve ────────────────────── v4.16.0 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.9.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.9.0 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed Crayons ───────────────────────────── v4.1.1 Installed MaybeInplace ──────────────────────── v0.1.4 Installed TableTraits ───────────────────────── v1.0.1 Installed RecursiveArrayTools ───────────────── v3.48.0 Installed OrdinaryDiffEqLinear ──────────────── v1.10.0 Installed UnPack ────────────────────────────── v1.0.2 Installed ADTypes ───────────────────────────── v1.21.0 Installed OpenSSH_jll ───────────────────────── v10.2.1+0 Installed MacroTools ────────────────────────── v0.5.16 Installed GenericSchur ──────────────────────── v0.5.6 Installed DiffResults ───────────────────────── v1.1.0 Installed DataStructures ────────────────────── v0.19.3 Installed ManualMemory ──────────────────────── v0.1.8 Installed AbstractTrees ─────────────────────── v0.4.5 Installed FillArrays ────────────────────────── v1.16.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed DelimitedFiles ────────────────────── v1.9.1 Installed SciMLJacobianOperators ────────────── v0.1.12 Installed CodecZlib ─────────────────────────── v0.7.8 Installed SparseMatrixColorings ─────────────── v0.4.24 Installed ArrayInterface ────────────────────── v7.22.0 Installed ExprTools ─────────────────────────── v0.1.10 Installed StatsBase ─────────────────────────── v0.34.10 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed DataValueInterfaces ───────────────── v1.0.0 Installed LoggingExtras ─────────────────────── v1.2.0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed Expat_jll ─────────────────────────── v2.7.3+0 Installed IrrationalConstants ───────────────── v0.2.6 Installed LayoutPointers ────────────────────── v0.1.17 Installed ConcreteStructs ───────────────────── v0.2.3 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.11.0 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed OrdinaryDiffEqExtrapolation ───────── v1.16.0 Installed IOCapture ─────────────────────────── v1.0.0 Installed OrdinaryDiffEqRKN ─────────────────── v1.10.0 Installed PooledArrays ──────────────────────── v1.4.3 Installed Setfield ──────────────────────────── v1.1.2 Installed Moshi ─────────────────────────────── v0.3.7 Installed OrdinaryDiffEqPRK ─────────────────── v1.8.0 Installed WorkerUtilities ───────────────────── v1.6.1 Installed PDMats ────────────────────────────── v0.11.37 Installed NonlinearSolveQuasiNewton ─────────── v1.12.0 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.9.0 Installed DocStringExtensions ───────────────── v0.9.5 Installed CompositionsBase ──────────────────── v0.1.2 Installed CommonSolve ───────────────────────── v0.2.6 Installed ForwardDiff ───────────────────────── v1.3.2 Installed DifferentiationInterface ──────────── v0.7.16 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed ZMQ ───────────────────────────────── v1.5.1 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed AliasTables ───────────────────────── v1.1.3 Installed OrdinaryDiffEqStabilizedRK ────────── v1.8.0 Installed VersionParsing ────────────────────── v1.3.0 Installed OrdinaryDiffEq ────────────────────── v6.108.0 Installed LineSearch ────────────────────────── v0.1.6 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed RecipesBase ───────────────────────── v1.3.4 Installed DataAPI ───────────────────────────── v1.16.0 Installed SciMLOperators ────────────────────── v1.15.1 Installed Git_LFS_jll ───────────────────────── v3.7.0+0 Installed Krylov ────────────────────────────── v0.10.5 Installed CSV ───────────────────────────────── v0.10.16 Installed InvertedIndices ───────────────────── v1.3.1 Installed OrdinaryDiffEqSymplecticRK ────────── v1.11.0 Installed Conda ─────────────────────────────── v1.10.3 Installed SciMLStructures ───────────────────── v1.10.0 Installed OrdinaryDiffEqBDF ─────────────────── v1.22.0 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed StaticArraysCore ──────────────────── v1.4.4 Installed OrdinaryDiffEqLowStorageRK ────────── v1.12.0 Installed Documenter ────────────────────────── v1.17.0 Installed CodeTracking ──────────────────────── v3.0.0 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed SciMLPublic ───────────────────────── v1.0.1 Installed FunctionWrappers ──────────────────── v1.1.3 Installed StaticArrays ──────────────────────── v1.9.17 Installed StringManipulation ────────────────── v0.4.4 Installed OrdinaryDiffEqDifferentiation ─────── v2.2.1 Installed Requires ──────────────────────────── v1.3.1 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.23.0 Installed LSODA ─────────────────────────────── v0.7.5 Installed LogExpFunctions ───────────────────── v0.3.29 Installed DiffRules ─────────────────────────── v1.15.1 Installed Git_jll ───────────────────────────── v2.53.0+0 Installed JuliaInterpreter ──────────────────── v0.10.10 Installed PrettyTables ──────────────────────── v3.2.3 Installed JSON ──────────────────────────────── v0.21.4 Installed Parsers ───────────────────────────── v2.8.3 Installed SciMLBase ─────────────────────────── v2.148.0 Installed OrdinaryDiffEqCore ────────────────── v3.15.0 Installed Distributions ─────────────────────── v0.25.123 Installed Rmath ─────────────────────────────── v0.9.0 Installed OrdinaryDiffEqExplicitRK ──────────── v1.9.0 Installed libsodium_jll ─────────────────────── v1.0.21+0 Installed NonlinearSolveFirstOrder ──────────── v2.0.0 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed FiniteDiff ────────────────────────── v2.29.0 Installed StatsFuns ─────────────────────────── v1.5.2 Installed Polyester ─────────────────────────── v0.7.19 Installed ZeroMQ_jll ────────────────────────── v4.3.6+0 Installed OrdinaryDiffEqFeagin ──────────────── v1.8.0 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.12.0 Installed Arpack_jll ────────────────────────── v3.5.2+0 Installed FastClosures ──────────────────────── v0.3.2 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed DataFrames ────────────────────────── v1.8.1 Installed OrdinaryDiffEqPDIRK ───────────────── v1.11.0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.11.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.12.0 Installed ThreadingUtilities ────────────────── v0.5.5 Installed Accessors ─────────────────────────── v0.1.43 Installed IJulia ────────────────────────────── v1.34.4 Installed ExponentialUtilities ──────────────── v1.30.0 Installed OrdinaryDiffEqVerner ──────────────── v1.11.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.17 Installed OrdinaryDiffEqDefault ─────────────── v1.13.0 Installed Adapt ─────────────────────────────── v4.5.0 Installed FilePathsBase ─────────────────────── v0.9.24 Installed ConstructionBase ──────────────────── v1.6.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed Compat ────────────────────────────── v4.18.1 Installed PositiveFactorizations ────────────── v0.2.4 Installed Statistics ────────────────────────── v1.11.1 Installed TranscodingStreams ────────────────── v0.11.3 Installed StrideArraysCore ──────────────────── v0.5.8 Installed TimerOutputs ──────────────────────── v0.5.29 Installed ExproniconLite ────────────────────── v0.10.14 Installed StatsAPI ──────────────────────────── v1.8.0 Installed PrecompileTools ───────────────────── v1.3.3 Installed ChainRulesCore ────────────────────── v1.26.0 Installed Parameters ────────────────────────── v0.12.3 Installed MarkdownAST ───────────────────────── v0.1.3 Installed IfElse ────────────────────────────── v0.1.1 Installed CPUSummary ────────────────────────── v0.2.7 Installed MuladdMacro ───────────────────────── v0.2.4 Installed LazilyInitializedFields ───────────── v1.3.0 Installed StochasticGene ────────────────────── v1.7.2 Installed SciMLLogging ──────────────────────── v1.9.1 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed FFTW ──────────────────────────────── v1.10.0 Installed LineSearches ──────────────────────── v7.5.1 Installed OrdinaryDiffEqFunctionMap ─────────── v1.9.0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.9.0 Installed PtrArrays ─────────────────────────── v1.4.0 Installed Git ───────────────────────────────── v1.5.0 Installed SpecialFunctions ──────────────────── v2.7.1 Installed PolyesterWeave ────────────────────── v0.2.2 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed SimpleNonlinearSolve ──────────────── v2.11.0 Installing 13 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Expat 283.3 KiB Installed artifact libsodium 1.6 MiB Installed artifact FFTW 2.2 MiB Installed artifact Arpack 138.3 KiB Installed artifact Rmath 121.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact ZeroMQ 316.1 KiB Installed artifact LSODA 24.9 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact testfiles 6.2 MiB Installed artifact Git 49.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [a2598c62] + StochasticGene v1.7.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.11.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v3.0.0 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.210.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.17.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.18 [d4d017d3] + ExponentialUtilities v1.30.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.10.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [d7ba0133] + Git v1.5.0 [34004b35] + HypergeometricFunctions v0.3.28 [7073ff75] + IJulia v1.34.4 [b5f81e59] + IOCapture v1.0.0 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.10.10 [ba0b0d4f] + Krylov v0.10.5 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [87fe0de2] + LineSearch v0.1.6 ⌃ [d3d80556] + LineSearches v7.5.1 [7ed4a6bd] + LinearSolve v3.62.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [6f1432cf] + LoweredCodeUtils v3.5.1 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.3 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings 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+ OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.12.0 [521117fe] + OrdinaryDiffEqLinear v1.10.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.12.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.23.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.9.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.11.0 [5b33eab2] + OrdinaryDiffEqPRK v1.8.0 [04162be5] + OrdinaryDiffEqQPRK v1.8.0 [af6ede74] + OrdinaryDiffEqRKN v1.10.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.25.0 [2d112036] + OrdinaryDiffEqSDIRK v1.12.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.11.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.11.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] + OrdinaryDiffEqVerner v1.11.0 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + 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[aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.9.0 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [a2598c62] + StochasticGene v1.7.2 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.4 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c2297ded] + ZMQ v1.5.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [2e619515] + Expat_jll v2.7.3+0 [f5851436] + FFTW_jll v3.3.11+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aae0fff6] + LSODA_jll v0.1.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/102656c4efc9737f892e1bca7e66ae374c650740/build.log` Installation completed after 71.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4164.5 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4119.8 ms ✓ MacroTools 1700.4 ms ✓ InlineStrings 802.8 ms ✓ Reexport 1227.4 ms ✓ ConstructionBase 2106.0 ms ✓ IrrationalConstants 780.0 ms ✓ DataValueInterfaces 909.0 ms ✓ StatsAPI 911.8 ms ✓ LazilyInitializedFields 949.2 ms ✓ VersionParsing 798.7 ms ✓ CommonSolve 1276.4 ms ✓ TranscodingStreams 851.6 ms ✓ LaTeXStrings 1108.5 ms ✓ Statistics 990.7 ms ✓ StaticArraysCore 1349.8 ms ✓ EnzymeCore 810.3 ms ✓ IfElse 848.6 ms ✓ PtrArrays 1025.5 ms ✓ ANSIColoredPrinters 924.7 ms ✓ ManualMemory 1009.9 ms ✓ PositiveFactorizations 892.5 ms ✓ DataAPI 864.5 ms ✓ SciMLPublic 3368.3 ms ✓ ExproniconLite 790.2 ms ✓ CommonWorldInvalidations 827.7 ms ✓ FastPower 849.9 ms ✓ InvertedIndices 955.4 ms ✓ InverseFunctions 871.6 ms ✓ CompositionsBase 1102.6 ms ✓ AbstractTrees 837.3 ms ✓ MuladdMacro 1022.5 ms ✓ AbstractFFTs 873.8 ms ✓ EnumX 990.0 ms ✓ WorkerUtilities 2016.2 ms ✓ FillArrays 899.1 ms ✓ ExprTools 833.2 ms ✓ UnPack 856.4 ms ✓ ConcreteStructs 1265.5 ms ✓ OrderedCollections 1468.7 ms ✓ FunctionWrappers 1382.9 ms ✓ ADTypes 1128.4 ms ✓ DocStringExtensions 837.0 ms ✓ FastClosures 1586.6 ms ✓ Compiler 793.8 ms ✓ SIMDTypes 788.8 ms ✓ IteratorInterfaceExtensions 1788.0 ms ✓ Crayons 862.1 ms ✓ IOCapture 989.3 ms ✓ DelimitedFiles 13424.5 ms ✓ Krylov 2256.7 ms ✓ GenericSchur 1015.4 ms ✓ NaNMath 1151.6 ms ✓ Requires 1668.4 ms ✓ CpuId 1696.1 ms ✓ PDMats 2044.1 ms ✓ SentinelArrays 1146.4 ms ✓ LoggingExtras 1690.1 ms ✓ CodeTracking 1258.2 ms ✓ Compat 1196.8 ms ✓ Preferences 1870.6 ms ✓ CommonSubexpressions 981.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 5689.0 ms ✓ RegistryInstances 1029.5 ms ✓ CodecZlib 1347.5 ms ✓ Statistics → SparseArraysExt 890.1 ms ✓ DiffResults 973.8 ms ✓ AliasTables 1816.0 ms ✓ ThreadingUtilities 986.5 ms ✓ Missings 1015.2 ms ✓ PooledArrays 3171.7 ms ✓ Jieko 888.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1635.7 ms ✓ InverseFunctions → InverseFunctionsTestExt 844.3 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1810.3 ms ✓ MarkdownAST 4147.6 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1636.5 ms ✓ FillArrays → FillArraysSparseArraysExt 967.3 ms ✓ FillArrays → FillArraysStatisticsExt 3332.8 ms ✓ TimerOutputs 957.7 ms ✓ RuntimeGeneratedFunctions 977.3 ms ✓ Parameters 3321.8 ms ✓ DataStructures 791.7 ms ✓ FunctionWrappersWrappers 770.2 ms ✓ ADTypes → ADTypesConstructionBaseExt 1793.0 ms ✓ DifferentiationInterface 768.4 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1304.5 ms ✓ LogExpFunctions 778.8 ms ✓ TableTraits 951.3 ms ✓ Adapt 1428.5 ms ✓ FillArrays → FillArraysPDMatsExt 9154.9 ms ✓ JuliaInterpreter 849.0 ms ✓ Compat → CompatLinearAlgebraExt 923.9 ms ✓ PrecompileTools 1202.6 ms ✓ JLLWrappers 1480.7 ms ✓ TruncatedStacktraces 1379.6 ms ✓ SciMLLogging 2881.3 ms ✓ Setfield 16966.7 ms ✓ Moshi 5160.7 ms ✓ Accessors 1139.1 ms ✓ SortingAlgorithms 2296.7 ms ✓ QuadGK 1448.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 870.6 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1756.1 ms ✓ Tables 1274.1 ms ✓ ArrayInterface 1297.0 ms ✓ Adapt → AdaptSparseArraysExt 1274.7 ms ✓ GPUArraysCore 815.5 ms ✓ EnzymeCore → AdaptExt 17515.5 ms ✓ LoweredCodeUtils 2660.4 ms ✓ ChainRulesCore 2110.3 ms ✓ FilePathsBase 3135.9 ms ✓ StringManipulation 13028.7 ms ✓ StaticArrays 2805.3 ms ✓ RecipesBase 16115.0 ms ✓ Parsers 6712.7 ms ✓ Static 12461.0 ms ✓ SparseMatrixColorings 1547.9 ms ✓ libsodium_jll 1535.8 ms ✓ Rmath_jll 1548.2 ms ✓ OpenSpecFun_jll 5180.1 ms ✓ IntelOpenMP_jll 5052.9 ms ✓ oneTBB_jll 1542.8 ms ✓ Arpack_jll 1569.0 ms ✓ Git_LFS_jll 1584.7 ms ✓ FFTW_jll 1670.4 ms ✓ OpenSSH_jll 1533.9 ms ✓ LSODA_jll 1598.0 ms ✓ Libiconv_jll 1632.6 ms ✓ Expat_jll 1819.3 ms ✓ Accessors → TestExt 2813.9 ms ✓ Accessors → LinearAlgebraExt 4707.8 ms ✓ StatsBase 798.2 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2264.0 ms ✓ MaybeInplace 1321.0 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1408.1 ms ✓ SciMLStructures 2437.2 ms ✓ PreallocationTools 897.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 901.0 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 13043.1 ms ✓ Revise 1393.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1355.4 ms ✓ EnzymeCore → EnzymeCoreChainRulesCoreExt 1003.6 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 864.4 ms ✓ ADTypes → ADTypesChainRulesCoreExt 954.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3573.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 902.5 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2883.0 ms ✓ FilePathsBase → FilePathsBaseTestExt 1011.7 ms ✓ FilePathsBase → FilePathsBaseMmapExt 41905.9 ms ✓ PrettyTables 1491.4 ms ✓ StaticArrays → StaticArraysStatisticsExt 1506.1 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1517.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1744.3 ms ✓ FillArrays → FillArraysStaticArraysExt 1475.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1431.1 ms ✓ Adapt → AdaptStaticArraysExt 1606.0 ms ✓ Accessors → StaticArraysExt 3949.7 ms ✓ JSON 1001.5 ms ✓ InlineStrings → ParsersExt 1101.8 ms ✓ BitTwiddlingConvenienceFunctions 2407.5 ms ✓ CPUSummary 8419.0 ms ✓ StaticArrayInterface 1812.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1513.4 ms ✓ ZeroMQ_jll 1631.3 ms ✓ Rmath 5184.9 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10064.8 ms ✓ MKL_jll 1463.1 ms ✓ Arpack 1597.7 ms ✓ Git_jll 4890.3 ms ✓ SciMLOperators 1440.8 ms ✓ PDMats → StatsBaseExt 1359.7 ms ✓ FiniteDiff 3898.1 ms ✓ SymbolicIndexingInterface 1325.8 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 40309.7 ms ✓ ExponentialUtilities 4130.4 ms ✓ Revise → DistributedExt 81866.1 ms ✓ DataFrames 1708.2 ms ✓ Conda 2483.3 ms ✓ WeakRefStrings 1724.8 ms ✓ PolyesterWeave 1629.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1116.8 ms ✓ CloseOpenIntervals 1312.7 ms ✓ LayoutPointers 5162.7 ms ✓ ZMQ 4397.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 5165.4 ms ✓ FastGaussQuadrature 2160.0 ms ✓ HypergeometricFunctions 1281.7 ms ✓ DiffRules 6540.5 ms ✓ FFTW 956.6 ms ✓ Git 999.5 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1481.0 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1380.6 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1236.9 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 985.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3308.1 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 7356.7 ms ✓ RecursiveArrayTools 5571.9 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 24356.5 ms ✓ CSV 1958.6 ms ✓ StrideArraysCore 15919.8 ms ✓ IJulia 2758.1 ms ✓ StatsFuns 6962.9 ms ✓ ForwardDiff 46719.5 ms ✓ Documenter 1981.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1384.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 1331.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 1999.3 ms ✓ Polyester 21063.2 ms ✓ IJulia → IJuliaReviseExt 3636.4 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1016.4 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9501.0 ms ✓ Distributions 1809.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1171.5 ms ✓ FastPower → FastPowerForwardDiffExt 1484.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2286.3 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1303.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 31504.0 ms ✓ SciMLBase 1961.0 ms ✓ FastBroadcast 3532.8 ms ✓ Distributions → DistributionsTestExt 3055.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 3611.3 ms ✓ MultivariateStats 1818.7 ms ✓ NLSolversBase 3859.6 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 4180.0 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 3240.2 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 4638.2 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2303.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 2437.2 ms ✓ LineSearches 19707.5 ms ✓ LinearSolve 8239.2 ms ✓ SciMLJacobianOperators 6064.0 ms ✓ Optim 8378.3 ms ✓ LinearSolve → LinearSolveSparseArraysExt 6964.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 11689.1 ms ✓ LineSearch 17658.5 ms ✓ NonlinearSolveBase 4544.2 ms ✓ LinearSolve → LinearSolveEnzymeExt 3620.2 ms ✓ LineSearch → LineSearchLineSearchesExt 5112.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4101.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3342.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 4305.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 3331.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 4257.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8692.7 ms ✓ BracketingNonlinearSolve 27113.6 ms ✓ NonlinearSolveQuasiNewton 17654.3 ms ✓ NonlinearSolveSpectralMethods 55501.9 ms ✓ NonlinearSolveFirstOrder 3867.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 7781.7 ms ✓ DiffEqBase 5409.2 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 4295.1 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 3317.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 17517.8 ms ✓ SimpleNonlinearSolve 4310.8 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 3616.0 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4389.6 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 6525.9 ms ✓ LSODA 12585.7 ms ✓ OrdinaryDiffEqCore 4236.5 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 5153.6 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreSparseArraysExt 7665.7 ms ✓ OrdinaryDiffEqStabilizedRK 6077.1 ms ✓ OrdinaryDiffEqFunctionMap 56968.4 ms ✓ OrdinaryDiffEqVerner 6610.4 ms ✓ OrdinaryDiffEqQPRK 6826.0 ms ✓ OrdinaryDiffEqSymplecticRK 8355.7 ms ✓ OrdinaryDiffEqLowOrderRK 5791.3 ms ✓ OrdinaryDiffEqFeagin 6629.6 ms ✓ OrdinaryDiffEqSSPRK 6137.7 ms ✓ OrdinaryDiffEqRKN 5852.0 ms ✓ OrdinaryDiffEqHighOrderRK 5738.4 ms ✓ OrdinaryDiffEqExplicitRK 13634.8 ms ✓ OrdinaryDiffEqTsit5 6918.1 ms ✓ OrdinaryDiffEqPRK 9178.6 ms ✓ OrdinaryDiffEqLowStorageRK 36541.9 ms ✓ NonlinearSolve 10615.9 ms ✓ OrdinaryDiffEqLinear 13032.9 ms ✓ OrdinaryDiffEqDifferentiation 6043.7 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 5939.8 ms ✓ OrdinaryDiffEqNordsieck 6232.8 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 11981.2 ms ✓ OrdinaryDiffEqExtrapolation 43087.8 ms ✓ OrdinaryDiffEqRosenbrock 14903.0 ms ✓ OrdinaryDiffEqExponentialRK 13469.9 ms ✓ OrdinaryDiffEqNonlinearSolve 12298.7 ms ✓ OrdinaryDiffEqIMEXMultistep 12112.3 ms ✓ OrdinaryDiffEqStabilizedIRK 13231.6 ms ✓ OrdinaryDiffEqPDIRK 15485.0 ms ✓ OrdinaryDiffEqSDIRK 53096.8 ms ✓ OrdinaryDiffEqFIRK 29692.4 ms ✓ OrdinaryDiffEqBDF 69534.6 ms ✓ OrdinaryDiffEqDefault 23464.2 ms ✓ OrdinaryDiffEq 46485.0 ms ✓ StochasticGene 293 dependencies successfully precompiled in 1733 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1745.47s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_raH8J1/Project.toml` [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [e30172f5] Documenter v1.17.0 [7a1cc6ca] FFTW v1.10.0 [7073ff75] IJulia v1.34.4 ⌅ [682c06a0] JSON v0.21.4 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.4 ⌅ [429524aa] Optim v1.13.3 [1dea7af3] OrdinaryDiffEq v6.108.0 [295af30f] Revise v3.13.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [a2598c62] StochasticGene v1.7.2 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_raH8J1/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.11.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v3.0.0 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.210.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.18 [d4d017d3] ExponentialUtilities v1.30.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.34.4 [b5f81e59] IOCapture v1.0.0 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.10 [ba0b0d4f] Krylov v0.10.5 [7f56f5a3] LSODA v0.7.5 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [87fe0de2] LineSearch v0.1.6 ⌃ [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.62.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [6f1432cf] LoweredCodeUtils v3.5.1 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.3 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [6f286f6a] MultivariateStats v0.10.4 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.16.0 [be0214bd] NonlinearSolveBase v2.15.0 [5959db7a] NonlinearSolveFirstOrder v2.0.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.108.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 [6ad6398a] OrdinaryDiffEqBDF v1.22.0 [bbf590c4] OrdinaryDiffEqCore v3.15.0 [50262376] OrdinaryDiffEqDefault v1.13.0 [4302a76b] OrdinaryDiffEqDifferentiation v2.2.1 [9286f039] OrdinaryDiffEqExplicitRK v1.9.0 [e0540318] OrdinaryDiffEqExponentialRK v1.13.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.16.0 [5960d6e9] OrdinaryDiffEqFIRK v1.23.0 [101fe9f7] OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.12.0 [521117fe] OrdinaryDiffEqLinear v1.10.0 [1344f307] 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[0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Warmup ┌ Info: Updated proposal covariance (scaled) │ proposalcv = │ 3×3 Matrix{Float64}: │ 0.0713352 -0.00938468 0.309633 │ -0.00938468 0.0323124 -0.0389911 └ 0.309633 -0.0389911 1.63183 Sampling Histogram count: 6774.0 Warmup ┌ Info: Updated proposal covariance (scaled) │ proposalcv = │ 3×3 Matrix{Float64}: │ 0.108733 0.188046 0.0802779 │ 0.188046 2.23305 2.01123 └ 0.0802779 2.01123 1.93696 Sampling Sampling Warmup Sampling Warmup Sampling 0.18146883005977796 initial: [0.01, 0.01, 0.1, 0.15, 0.1, 1.0, 50.0, 5.0, 50.0, 5.0] Warmup Sampling 452 905 No rate file, set rate to prior Warmup Sampling Warmup Sampling 277 821 Warmup Sampling ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1168 running 1 of 1 signal (10): User defined signal 1 set_page_metadata at /source/src/gc-stock.h:438 [inlined] gc_add_page at /source/src/gc-stock.c:714 jl_gc_small_alloc_inner at /source/src/gc-stock.c:772 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:792 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:806 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:646 [inlined] Array at ./boot.jl:706 [inlined] Array at ./boot.jl:719 [inlined] similar at ./array.jl:407 [inlined] similar at ./abstractarray.jl:832 [inlined] _similar_for at ./array.jl:695 [inlined] _collect at ./array.jl:853 [inlined] collect_similar at ./array.jl:763 [inlined] map at ./abstractarray.jl:3386 [inlined] _broadcast_preserving_zero_d at ./arraymath.jl:28 [inlined] * at ./arraymath.jl:57 [inlined] forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:974 forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1059 [inlined] _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1647 unknown function (ip: 0x79e69097a442) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1842 unknown function (ip: 0x79e6909712c5) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:530 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:535 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:584 unknown function (ip: 0x79e69097ed70) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:478 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:468 unknown function (ip: 0x79e69098465d) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:322 run_mh at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:130 [inlined] #test_fit_tracejoint#375 at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:404 test_fit_tracejoint at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:396 unknown function (ip: 0x79e69094007f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 jl_apply at /source/src/julia.h:2295 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 jl_apply at /source/src/julia.h:2295 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 jl_apply at /source/src/julia.h:2295 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x79e6e177c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 jl_apply at /source/src/julia.h:2295 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000079205c0e0a60 Total snapshots: 442. Utilization: 0% ╎442 @Base/task.jl:1168 wait_forever() 441╎ 442 @Base/task.jl:1246 wait() [1168] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StochasticGene/586ID/test/runtests.jl:11 == at ./promotion.jl:637 [inlined] iterate at ./range.jl:925 [inlined] forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:971 forward at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1059 [inlined] _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1647 unknown function (ip: 0x79e69097a442) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/hmm.jl:1842 unknown function (ip: 0x79e6909712c5) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:530 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/likelihoods.jl:535 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:584 unknown function (ip: 0x79e69097ed70) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:478 sample at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:468 unknown function (ip: 0x79e69098465d) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:322 run_mh at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/metropolis_hastings.jl:130 [inlined] #test_fit_tracejoint#375 at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:404 test_fit_tracejoint at /home/pkgeval/.julia/packages/StochasticGene/586ID/src/test.jl:396 unknown function (ip: 0x79e69094007f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 jl_apply at /source/src/julia.h:2295 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 jl_apply at /source/src/julia.h:2295 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:766 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:780 ijl_toplevel_eval_in at /source/src/toplevel.c:825 eval at ./boot.jl:517 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4342 jl_apply at /source/src/julia.h:2295 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x79e6e177c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 5344565401 (Pool: 5344564049; Big: 1352); GC: 4171 PkgEval terminated after 2721.8s: test duration exceeded the time limit