Package evaluation to test PhyNEST on Julia 1.14.0-DEV.1808 (1cd77b505e*) started at 2026-02-27T02:01:56.727 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.56s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.3+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Cairo_jll ─────────────────── v1.18.5+1 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed InlineStrings ─────────────── v1.4.5 Installed Functors ──────────────────── v0.3.0 Installed Optim ─────────────────────── v1.13.3 Installed OrderedCollections ────────── v1.8.1 Installed SentinelArrays ────────────── v1.4.9 Installed libsass_jll ───────────────── v3.6.6+0 Installed Xorg_libXinerama_jll ──────── v1.1.7+0 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed FileIO ────────────────────── v1.18.0 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed Graphics ──────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Tables ────────────────────── v1.12.1 Installed NLSolversBase ─────────────── v7.10.0 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed EnumX ─────────────────────── v1.0.7 Installed Reexport ──────────────────── v1.2.2 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed TableTraits ───────────────── v1.0.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed Preferences ───────────────── v1.5.2 Installed ADTypes ───────────────────── v1.21.0 Installed DataStructures ────────────── v0.18.22 Installed MacroTools ────────────────── v0.5.16 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed Sass ──────────────────────── v0.2.0 Installed DiffResults ───────────────── v1.1.0 Installed AbstractTrees ─────────────── v0.4.5 Installed DelimitedFiles ────────────── v1.9.1 Installed FillArrays ────────────────── v1.16.0 Installed Xorg_libXdamage_jll ───────── v1.1.7+0 Installed CodecZlib ─────────────────── v0.7.8 Installed RoundingIntegers ──────────── v1.1.0 Installed ArrayInterface ────────────── v7.22.0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed Observables ───────────────── v0.5.5 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed CEnum ─────────────────────── v0.5.0 Installed DataValueInterfaces ───────── v1.0.0 Installed MethodAnalysis ────────────── v1.0.0 Installed Cairo ─────────────────────── v1.1.1 Installed StatsBase ─────────────────── v0.33.21 Installed CommonSubexpressions ──────── v0.3.1 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed IrrationalConstants ───────── v0.2.6 Installed libpng_jll ────────────────── v1.6.55+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed BitFlags ──────────────────── v0.1.9 Installed Libffi_jll ────────────────── v3.4.7+0 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed PooledArrays ──────────────── v1.4.3 Installed Scratch ───────────────────── v1.3.0 Installed BenchmarkTools ────────────── v1.6.3 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed Graphene_jll ──────────────── v1.10.8+0 Installed FASTX ─────────────────────── v2.1.7 Installed IOCapture ─────────────────── v0.2.5 Installed Setfield ──────────────────── v1.1.2 Installed WorkerUtilities ───────────── v1.6.1 Installed PDMats ────────────────────── v0.11.35 Installed DocStringExtensions ───────── v0.9.5 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed ForwardDiff ───────────────── v1.3.2 Installed BioSequences ──────────────── v3.5.1 Installed DifferentiationInterface ──── v0.7.16 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MathOptInterface ──────────── v1.49.0 Installed AliasTables ───────────────── v1.1.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Combinatorics ─────────────── v1.1.0 Installed SIMD ──────────────────────── v3.7.2 Installed StringViews ───────────────── v1.3.7 Installed ShiftedArrays ─────────────── v2.0.0 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed StatsModels ───────────────── v0.6.33 Installed CSV ───────────────────────── v0.10.16 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Twiddle ───────────────────── v1.1.2 Installed Colors ────────────────────── v0.13.1 Installed GtkObservables ────────────── v2.2.2 Installed StaticArraysCore ──────────── v1.4.4 Installed StaticArrays ──────────────── v1.9.17 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Documenter ────────────────── v0.27.25 Installed ColorTypes ────────────────── v0.12.1 Installed Xorg_libxkbfile_jll ───────── v1.2.0+0 Installed Glib_jll ──────────────────── v2.86.3+0 Installed StringManipulation ────────── v0.4.4 Installed Requires ──────────────────── v1.3.1 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed Git_jll ───────────────────── v2.53.0+0 Installed Parsers ───────────────────── v2.8.3 Installed DocumenterTools ───────────── v0.1.21 Installed FiniteDiff ────────────────── v2.29.0 Installed PrettyTables ──────────────── v3.2.3 Installed Distributions ─────────────── v0.25.123 Installed Rmath ─────────────────────── v0.9.0 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed PhyloNetworks ─────────────── v0.15.3 Installed BioGenerics ───────────────── v0.1.5 Installed StatsFuns ─────────────────── v1.5.2 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.2+0 Installed Pango_jll ─────────────────── v1.57.0+0 Installed DataFrames ────────────────── v1.8.1 Installed MutableArithmetics ────────── v1.6.7 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed FilePathsBase ─────────────── v0.9.24 Installed Adapt ─────────────────────── v4.4.0 Installed NLopt ─────────────────────── v0.6.5 Installed FlameGraphs ───────────────── v1.1.0 Installed ConstructionBase ──────────── v1.6.0 Installed Libmount_jll ──────────────── v2.41.3+0 Installed HypergeometricFunctions ───── v0.3.28 Installed GLM ───────────────────────── v1.8.3 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed Compat ────────────────────── v4.18.1 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed Suppressor ────────────────── v0.2.8 Installed TranscodingStreams ────────── v0.11.3 Installed Xorg_libX11_jll ───────────── v1.8.13+0 Installed StatsAPI ──────────────────── v1.8.0 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed BioSymbols ────────────────── v5.2.0 Installed CodecBzip2 ────────────────── v0.8.5 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed PrecompileTools ───────────── v1.3.3 Installed ProfileView ───────────────── v1.10.2 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed PtrArrays ─────────────────── v1.4.0 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Git ───────────────────────── v1.5.0 Installed IntervalSets ──────────────── v0.7.13 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed SpecialFunctions ──────────── v2.7.1 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Gumbo ─────────────────────── v0.8.3 Installed LineSearches ──────────────── v7.5.1 Installed Xorg_libXext_jll ──────────── v1.3.8+0 Installed IndirectArrays ────────────── v1.0.0 Installed Automa ────────────────────── v1.1.0 Installed ANSIColoredPrinters ───────── v0.0.1 Installed Xorg_libXrandr_jll ────────── v1.5.6+0 Installed MathProgBase ──────────────── v0.7.8 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed PhyNEST ───────────────────── v0.1.12 Installed Gtk4 ──────────────────────── v0.7.12 Installing 61 artifacts Installed artifact FriBidi 78.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact LZO 208.9 KiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libXext 286.6 KiB Installed artifact Libtiff 2.3 MiB Installed artifact XML2 2.5 MiB Installed artifact Libepoxy 504.4 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Cairo 2.2 MiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Expat 283.3 KiB Installed artifact Gumbo 703.8 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Libiconv 1.9 MiB Installed artifact XZ 1.5 MiB Installed artifact libsass 8.9 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact libpng 328.7 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact LERC 272.9 KiB Installed artifact Pango 2.0 MiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_libXdamage 24.2 KiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libffi 44.2 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_libXrandr 97.3 KiB Installed artifact Rmath 121.9 KiB Installed artifact Glib 7.7 MiB Installed artifact Bzip2 503.5 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Pixman 372.2 KiB Installed artifact Librsvg 9.3 MiB Installed artifact Xorg_libxkbfile 91.1 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact NLopt 322.7 KiB Installed artifact Xorg_libXinerama 25.5 KiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact Xorg_libX11 4.8 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Libmount 6.5 MiB Installed artifact Graphene 223.2 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact testfiles 6.2 MiB Installed artifact iso_codes 7.5 MiB Installed artifact GTK4 14.1 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Git 49.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.16 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.7 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.18.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.2 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.12 [8710efd8] + GtkObservables v2.2.2 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.13 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.49.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.2.3 [c46f51b8] + ProfileView v1.10.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.4 [354b36f9] + StringViews v1.3.7 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+1 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [7746bdde] + Glib_jll v2.86.3+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.3+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.3+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.7+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.55+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 34.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4641.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4719.0 ms ✓ MacroTools 1700.7 ms ✓ InlineStrings 817.6 ms ✓ Reexport 1206.1 ms ✓ ConstructionBase 2228.8 ms ✓ IrrationalConstants 823.2 ms ✓ DataValueInterfaces 908.0 ms ✓ StatsAPI 1117.4 ms ✓ Observables 991.1 ms ✓ Twiddle 1181.2 ms ✓ IntervalSets 894.1 ms ✓ CEnum 1115.0 ms ✓ Functors 2230.1 ms ✓ Combinatorics 1156.9 ms ✓ StringViews 1401.0 ms ✓ TranscodingStreams 1013.4 ms ✓ LaTeXStrings 1254.5 ms ✓ Statistics 1049.3 ms ✓ StaticArraysCore 904.6 ms ✓ Suppressor 926.0 ms ✓ PtrArrays 1154.1 ms ✓ ANSIColoredPrinters 1039.6 ms ✓ PositiveFactorizations 908.4 ms ✓ DataAPI 899.7 ms ✓ InvertedIndices 965.9 ms ✓ BitFlags 960.6 ms ✓ ShiftedArrays 1164.6 ms ✓ AbstractTrees 904.8 ms ✓ EnumX 1095.1 ms ✓ WorkerUtilities 2183.0 ms ✓ FillArrays 879.3 ms ✓ IndirectArrays 900.0 ms ✓ RoundingIntegers 1334.9 ms ✓ OrderedCollections 1485.9 ms ✓ ADTypes 1141.6 ms ✓ DocStringExtensions 785.0 ms ✓ IteratorInterfaceExtensions 1914.7 ms ✓ Crayons 898.3 ms ✓ IOCapture 1018.0 ms ✓ DelimitedFiles 1074.4 ms ✓ NaNMath 1230.8 ms ✓ Requires 1849.4 ms ✓ PDMats 2690.8 ms ✓ MathProgBase 1020.4 ms ✓ Scratch 2089.8 ms ✓ SentinelArrays 1302.8 ms ✓ Compat 1405.6 ms ✓ Preferences 12368.0 ms ✓ MutableArithmetics 1821.6 ms ✓ CommonSubexpressions 870.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 808.8 ms ✓ IntervalSets → IntervalSetsRandomExt 799.0 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1009.4 ms ✓ BioGenerics 1063.9 ms ✓ CodecZlib 1384.1 ms ✓ Statistics → SparseArraysExt 4074.5 ms ✓ FixedPointNumbers 804.5 ms ✓ IntervalSets → IntervalSetsStatisticsExt 904.1 ms ✓ DiffResults 1028.3 ms ✓ AliasTables 993.2 ms ✓ Missings 1047.5 ms ✓ PooledArrays 917.2 ms ✓ LeftChildRightSiblingTrees 1134.2 ms ✓ MethodAnalysis 1583.9 ms ✓ FillArrays → FillArraysSparseArraysExt 1000.9 ms ✓ FillArrays → FillArraysStatisticsExt 849.1 ms ✓ ADTypes → ADTypesConstructionBaseExt 1975.8 ms ✓ DifferentiationInterface 1421.6 ms ✓ LogExpFunctions 791.5 ms ✓ TableTraits 974.8 ms ✓ Adapt 9234.4 ms ✓ FileIO 1517.4 ms ✓ FillArrays → FillArraysPDMatsExt 911.7 ms ✓ Compat → CompatLinearAlgebraExt 957.9 ms ✓ PrecompileTools 1297.1 ms ✓ JLLWrappers 3149.0 ms ✓ Setfield 2906.3 ms ✓ ColorTypes 1394.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1951.2 ms ✓ Tables 1260.2 ms ✓ ArrayInterface 1358.1 ms ✓ Adapt → AdaptSparseArraysExt 2379.4 ms ✓ FilePathsBase 3916.2 ms ✓ DataStructures 2704.5 ms ✓ BioSymbols 3398.2 ms ✓ StringManipulation 14970.0 ms ✓ SIMD 14460.5 ms ✓ StaticArrays 15318.5 ms ✓ Parsers 1395.7 ms ✓ Libffi_jll 1400.6 ms ✓ LZO_jll 1399.5 ms ✓ Bzip2_jll 1490.6 ms ✓ XZ_jll 1415.7 ms ✓ NLopt_jll 1413.1 ms ✓ Rmath_jll 1515.9 ms ✓ OpenSpecFun_jll 1230.1 ms ✓ Xorg_xtrans_jll 1407.8 ms ✓ libpng_jll 1470.2 ms ✓ iso_codes_jll 1139.1 ms ✓ EpollShim_jll 1230.0 ms ✓ Wayland_protocols_jll 1394.4 ms ✓ Libmount_jll 1416.4 ms ✓ Libuuid_jll 1512.1 ms ✓ FriBidi_jll 1493.0 ms ✓ LERC_jll 1544.2 ms ✓ Git_LFS_jll 1515.8 ms ✓ libsass_jll 1529.4 ms ✓ Gumbo_jll 1529.2 ms ✓ Xorg_libXau_jll 1639.2 ms ✓ OpenSSH_jll 1520.1 ms ✓ hicolor_icon_theme_jll 1553.3 ms ✓ Graphite2_jll 1532.1 ms ✓ LLVMOpenMP_jll 1543.1 ms ✓ Libiconv_jll 1535.9 ms ✓ Xorg_libXdmcp_jll 1538.2 ms ✓ Expat_jll 1573.3 ms ✓ JpegTurbo_jll 1304.5 ms ✓ ColorTypes → StyledStringsExt 8455.5 ms ✓ Colors 815.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1314.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2842.8 ms ✓ FilePathsBase → FilePathsBaseTestExt 970.4 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1609.9 ms ✓ SortingAlgorithms 2884.0 ms ✓ QuadGK 10002.0 ms ✓ BioSequences 41152.1 ms ✓ PrettyTables 17787.0 ms ✓ Automa 1486.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1472.7 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1639.0 ms ✓ FillArrays → FillArraysStaticArraysExt 1493.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1430.2 ms ✓ Adapt → AdaptStaticArraysExt 4049.5 ms ✓ JSON 1015.3 ms ✓ InlineStrings → ParsersExt 1096.6 ms ✓ CodecBzip2 1545.9 ms ✓ FreeType2_jll 1590.4 ms ✓ Rmath 5348.9 ms ✓ SpecialFunctions 2188.3 ms ✓ Sass 1231.1 ms ✓ Gumbo 1481.5 ms ✓ adwaita_icon_theme_jll 1742.4 ms ✓ Pixman_jll 1562.5 ms ✓ XML2_jll 1599.6 ms ✓ GettextRuntime_jll 1604.8 ms ✓ Xorg_libxcb_jll 1586.0 ms ✓ Git_jll 1523.7 ms ✓ Wayland_jll 1550.2 ms ✓ Libtiff_jll 1428.7 ms ✓ Graphics 10636.0 ms ✓ FlameGraphs 1378.7 ms ✓ FiniteDiff 4970.7 ms ✓ StatsBase 83729.6 ms ✓ DataFrames 18295.8 ms ✓ FASTX 8738.6 ms ✓ Documenter 2926.2 ms ✓ BenchmarkTools 2374.8 ms ✓ WeakRefStrings 1552.4 ms ✓ Fontconfig_jll 2223.4 ms ✓ HypergeometricFunctions 1336.6 ms ✓ DiffRules 1601.7 ms ✓ Glib_jll 1457.9 ms ✓ Xorg_libX11_jll 966.1 ms ✓ Git 1389.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1290.7 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 992.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1919.2 ms ✓ FASTX → BioSequencesExt 24831.9 ms ✓ CSV 2989.9 ms ✓ StatsFuns 6546.0 ms ✓ ForwardDiff 1551.2 ms ✓ Graphene_jll 1563.5 ms ✓ Xorg_libXfixes_jll 1542.4 ms ✓ Xorg_libXrender_jll 1496.6 ms ✓ Xorg_libXext_jll 1513.0 ms ✓ Xorg_libxkbfile_jll 1553.9 ms ✓ gdk_pixbuf_jll 4105.7 ms ✓ DocumenterTools 4940.4 ms ✓ StatsModels 10043.5 ms ✓ Distributions 1819.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1447.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 75023.2 ms ✓ MathOptInterface 1520.0 ms ✓ Xorg_libXdamage_jll 1544.8 ms ✓ Xorg_libXcursor_jll 1492.4 ms ✓ Xorg_libXrandr_jll 1524.6 ms ✓ Xorg_libXinerama_jll 1445.4 ms ✓ Xorg_libXi_jll 1524.5 ms ✓ Cairo_jll 1524.8 ms ✓ Libglvnd_jll 1561.8 ms ✓ Xorg_xkbcomp_jll 5631.4 ms ✓ GLM 3468.1 ms ✓ Distributions → DistributionsTestExt 1807.0 ms ✓ NLSolversBase 6333.1 ms ✓ NLopt 1605.4 ms ✓ HarfBuzz_jll 1457.7 ms ✓ Libepoxy_jll 1312.0 ms ✓ Xorg_xkeyboard_config_jll 2343.8 ms ✓ LineSearches 26393.2 ms ✓ PhyloNetworks 1506.3 ms ✓ Pango_jll 1427.2 ms ✓ xkbcommon_jll 6404.1 ms ✓ Optim 2575.8 ms ✓ Cairo 1671.6 ms ✓ Librsvg_jll 1907.5 ms ✓ GTK4_jll 6673.9 ms ✓ Optim → OptimMOIExt 50343.4 ms ✓ Gtk4  (julia:879): Gtk-WARNING **: 02:16:33.386: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 26706.1 ms ✓ GtkObservables  (julia:888): Gtk-WARNING **: 02:17:09.158: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 18605.5 ms ✓ ProfileView 22337.5 ms ✓ PhyNEST 210 dependencies successfully precompiled in 846 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ GtkObservables │ (julia:879): Gtk-WARNING **: 02:16:33.386: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ ProfileView │ (julia:888): Gtk-WARNING **: 02:17:09.158: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 868.2s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_EX8bob/Project.toml` [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [429524aa] Optim v1.13.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.2 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_EX8bob/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.16 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.7 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.18.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.2 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.12 [8710efd8] GtkObservables v2.2.2 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.49.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.2.3 [c46f51b8] ProfileView v1.10.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [90137ffa] StaticArrays v1.9.17 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.4 [354b36f9] StringViews v1.3.7 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+1 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.53.0+0 [7746bdde] Glib_jll v2.86.3+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.3+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.3+0 [079eb43e] NLopt_jll v2.10.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [2381bf8a] Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.7+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.7+0 [ec84b674] Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.2.0+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b437f822] adwaita_icon_theme_jll v43.0.1+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [059c91fe] hicolor_icon_theme_jll v0.18.0+0 [bf975903] iso_codes_jll v4.18.0+0 [b53b4c65] libpng_jll v1.6.55+0 [47bcb7c8] libsass_jll v3.6.6+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.9s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.2s Test Summary: | Pass Total Time Testing Method-of-moment estimates of speciation times | 1500 1500 0.0s Testing PhyNEST tests passed Testing completed after 52.96s PkgEval succeeded after 999.32s