Package evaluation to test CrystalNets on Julia 1.14.0-DEV.1786 (45ee44a91e*) started at 2026-02-26T16:55:48.001 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 12.58s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [7952bbbe] + CrystalNets v1.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.2.0 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] + PeriodicGraphs v1.0.1 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 5.56s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1422.6 ms ✓ Chemfiles_jll 1441.3 ms ✓ spglib_jll 7065.8 ms ✓ AtomsBase 10184.4 ms ✓ Graphs 7139.3 ms ✓ Chemfiles 74198.4 ms ✓ PeriodicGraphs 92193.5 ms ✓ PeriodicGraphEmbeddings 23732.0 ms ✓ PeriodicGraphEquilibriumPlacement 314338.4 ms ✓ CrystalNets 9 dependencies successfully precompiled in 533 seconds. 58 already precompiled. Precompilation completed after 553.92s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_C1glde/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [86223c79] Graphs v1.13.4 [18c5b727] PeriodicGraphs v1.0.1 [90137ffa] StaticArrays v1.9.17 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_C1glde/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [864edb3b] DataStructures v0.19.3 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.13.4 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] PeriodicGraphs v1.0.1 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.17 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 73 3 76 17m17.1s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 0.8s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 9m35.5s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 55.6s Test Summary: | Pass Broken Total Time Executable | 29 1 30 8.5s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .................................................. 20 / 36 .................................................. 21 / 36 .................................................. 22 / 36 .................................................. 23 / 36 .................................................. 24 / 36 .................................................. 25 / 36 .................................................. 26 / 36 .................................................. 27 / 36 .................................................. 28 / 36 .................................................. 29 / 36 .................................................. 30 / 36 .................................................. 31 / 36 .................................................. 32 / 36 ......... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 40 running 1 of 1 signal (10): User defined signal 1 ensure_indexable at ./multidimensional.jl:919 [inlined] SubArray at ./subarray.jl:28 [inlined] unsafe_view at ./subarray.jl:251 [inlined] view at ./subarray.jl:218 [inlined] attribute_next_available_modify! at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:569 attribute_next_available! at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:554 [inlined] translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:760 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:809 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:34 unknown function (ip: 0x78b4b39a5603) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:87 [inlined] #topological_genome#226 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 unknown function (ip: 0x78b4aefa722c) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_50232.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_60833.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x78b50fb2c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) .. ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000078b4f55fc010 Total snapshots: 139. Utilization: 100% ╎139 @Base/client.jl:585 _start() ╎ 139 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 139 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 139 @Base/Base.jl:325 (::Base.IncludeInto)(fname::String) ╎ 139 @Base/Base.jl:324 include(mapexpr::Function, mod::Module, _path::St… ╎ 139 @Base/loading.jl:3190 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 139 @Base/loading.jl:3130 include_string(mapexpr::typeof(identity), m… ╎ ╎ 139 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 139 @CrystalNets/…uery.jl:90 topological_genome(g::PeriodicGraph2D) ╎ ╎ 139 @CrystalNets/…ery.jl:90 #topological_genome#226 ╎ ╎ 5 @CrystalNets/…ery.jl:86 topological_genome ╎ ╎ ╎ 1 @CrystalNets/…es.jl:977 UnderlyingNets(g::PeriodicGraph2D, o… ╎ ╎ ╎ 1 @PeriodicGraphs/…jl:430 split_connected_components(graph::P… ╎ ╎ ╎ 1 @PeriodicGraphs/…l:342 _explore_one_component!(expected::V… ╎ ╎ ╎ 1 @Base/set.jl:137 push! ╎ ╎ ╎ 1 @Base/dict.jl:365 setindex!(h::Dict{PeriodicVertex2D, No… ╎ ╎ ╎ ╎ 1 @Base/dict.jl:327 _setindex! ╎ ╎ ╎ ╎ 1 @Base/…cmemory.jl:270 setindex! 1╎ ╎ ╎ ╎ 1 @Base/…memory.jl:262 _setindex! ╎ ╎ ╎ 4 @CrystalNets/…es.jl:992 UnderlyingNets(g::PeriodicGraph2D, o… ╎ ╎ ╎ 4 @Base/array.jl:1416 append! ╎ ╎ ╎ 4 @Base/array.jl:1423 _append!(a::Vector{Tuple{Vector{Crysta… ╎ ╎ ╎ 4 @Base/generator.jl:48 iterate ╎ ╎ ╎ 4 none:? (::CrystalNets.var"#UnderlyingNets##8#UnderlyingN… ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:675 (CrystalNet2D)(cell::PeriodicGrap… ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:41 equilibrium(g:… ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:507 dixon_solve(… ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:487 try_modulo ╎ ╎ ╎ ╎ 3 @PeriodicGraphEquilibriumPlacement/…:441 dixon_p(::… ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:905 materialize! ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:908 materialize! ╎ ╎ ╎ ╎ ╎ 2 @Base/…cast.jl:950 copyto! ╎ ╎ ╎ ╎ ╎ 2 @Base/…cast.jl:997 copyto! ╎ ╎ ╎ ╎ ╎ 2 @Base/…loop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ast.jl:615 getindex ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…st.jl:619 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…st.jl:674 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…st.jl:698 _getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…st.jl:675 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…st.jl:702 _broadcast_getindex_ev… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:558 - ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:553 - ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:192 ui_sub(a::UInt64, b… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:191 ui_sub! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:569 - ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:208 neg(a::BigInt) ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:116 * ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:119 mul ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:123 _mul ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:270 mul! ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:302 mul! ╎ ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:333 _mul! ╎ ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:348 generic_matmatmul_wrapp… ╎ ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:50 generic_matmatmul! ╎ ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:60 spdensemul! ╎ ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:91 _spmatmul!(C::Matrix{B… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:563 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:562 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:201 mul_si(a::BigInt, b::… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:200 mul_si! ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:442 dixon_p(::… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:311 linsolve!… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:273 forward_… ╎ ╎ ╎ ╎ ╎ 1 @Base/…dloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:274 macro … ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:55 + ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modu… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:1034 Int32 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:944 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:907 checked_trunc_sint ╎ ╎ 134 @CrystalNets/…ery.jl:87 topological_genome ╎ ╎ ╎ 134 @CrystalNets/…ry.jl:153 topological_genome(group::Underlying… ╎ ╎ ╎ 1 @CrystalNets/…ry.jl:22 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:232 collision_nodes(net::CrystalNet2D{R… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:87 get_CollisionList(g::PeriodicGraph2… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:28 get_CollisionNode(g::PeriodicGraph… ╎ ╎ ╎ ╎ 1 @Base/array.jl:838 collect(itr::Base.Generator{UnitRang… ╎ ╎ ╎ ╎ 1 @Base/array.jl:864 collect_to_with_first! ╎ ╎ ╎ ╎ 1 @Base/array.jl:886 collect_to! ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ 1 none:? #get_CollisionNode##0 ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:148 coordination_sequence(g::Per… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:99 _neighborhood(g::PeriodicGra… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:133 hash_position ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:100 hash_position ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:963 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1026 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:385 checkbounds 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:381 checkbounds ╎ ╎ ╎ 118 @CrystalNets/…ry.jl:34 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 118 @CrystalNets/…n.jl:274 minimize ╎ ╎ ╎ 118 @CrystalNets/…n.jl:287 minimize_unstable ╎ ╎ ╎ 117 @CrystalNets/…n.jl:809 find_first_valid_translation_unst… 1╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:0 translation_to_direct_map(shrunk_pv… 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:0 translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ ╎ 75 @CrystalNets/….jl:677 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1226 wait() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1067 yield() ╎ ╎ ╎ ╎ 9 @Base/task.jl:1069 yield() 2╎ ╎ ╎ ╎ 7 @Base/task.jl:976 enq_work(t::Task) 1╎ ╎ ╎ ╎ 1 @Base/task.jl:905 push!(W::Base.IntrusiveLinkedListS… 1╎ ╎ ╎ ╎ 2 @Base/task.jl:907 push!(W::Base.IntrusiveLinkedListS… 1╎ ╎ ╎ ╎ 1 @Base/…d_list.jl:53 push! ╎ ╎ ╎ ╎ 1 @Base/task.jl:909 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:103 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…utils.jl:160 enable_finalizers ╎ ╎ ╎ ╎ 1 @Base/task.jl:952 workqueue_for ╎ ╎ ╎ ╎ 1 @Base/lock.jl:863 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…ators.jl:424 > 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < 2╎ ╎ ╎ ╎ 2 @Base/task.jl:992 enq_work(t::Task) 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1070 yield() ╎ ╎ ╎ ╎ 63 @Base/task.jl:1071 yield() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1128 try_yieldto(undo::typeof(Base.ensu… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:0 wait() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1226 wait() ╎ ╎ ╎ ╎ 52 @Base/task.jl:1233 wait() 51╎ ╎ ╎ ╎ 52 @Base/libuv.jl:133 process_events ╎ ╎ ╎ ╎ 2 @Base/task.jl:1236 wait() ╎ ╎ ╎ ╎ 2 @Base/…tructs.jl:36 threadid ╎ ╎ ╎ ╎ 2 @Base/int.jl:1058 + 2╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:87 + ╎ ╎ ╎ ╎ 3 @Base/task.jl:1237 wait() ╎ ╎ ╎ ╎ 3 @Base/task.jl:1209 trypoptask(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ 1 @Base/task.jl:931 popfirst!(W::Base.IntrusiveLinked… ╎ ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:78 lock(l::Base.Threads.SpinLock) 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:88 trylock ╎ ╎ ╎ ╎ 2 @Base/task.jl:935 popfirst!(W::Base.IntrusiveLinked… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:100 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:637 == ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:103 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…utils.jl:160 enable_finalizers 1╎ ╎ ╎ ╎ 3 @Base/task.jl:1249 wait() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1129 try_yieldto(undo::typeof(Base.ens… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1130 try_yieldto(undo::typeof(Base.ens… ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:679 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1026 getindex ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:385 checkbounds 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:381 checkbounds 2╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:1027 getindex ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:686 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:99 backtrack_to!(vmapprogress::Vecto… ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:216 view ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:385 checkbounds ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:692 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:756 checkindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:753 checkindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:559 < ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:597 backtrack_to!(vmapprogress::Vect… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:559 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:455 first ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:81 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…mpiler.jl:57 getproperty ╎ ╎ ╎ ╎ 12 @CrystalNets/….jl:699 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/array.jl:827 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 1 @Base/array.jl:689 _similar_shape ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:53 axes ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:102 axes 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:10 size ╎ ╎ ╎ ╎ 4 @Base/array.jl:828 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 2 @Base/…nerator.jl:45 iterate ╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:1241 iterate ╎ ╎ ╎ ╎ 2 @Base/…array.jl:1241 iterate ╎ ╎ ╎ ╎ ╎ 2 @Base/…array.jl:1249 _iterate_abstractarray 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:1027 getindex ╎ ╎ ╎ ╎ 2 @Base/…nerator.jl:48 iterate ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:700 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1027 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:703 #translation_to_direct_map##0 ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1026 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:385 checkbounds ╎ ╎ ╎ ╎ 7 @Base/array.jl:833 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 7 @Base/array.jl:701 _array_for_inner ╎ ╎ ╎ ╎ 7 @Base/…tarray.jl:872 similar ╎ ╎ ╎ ╎ 7 @Base/array.jl:409 similar ╎ ╎ ╎ ╎ ╎ 7 @Base/…array.jl:873 similar ╎ ╎ ╎ ╎ ╎ 7 @Base/boot.jl:696 Array ╎ ╎ ╎ ╎ ╎ 7 @Base/boot.jl:688 Array ╎ ╎ ╎ ╎ ╎ 6 @Base/boot.jl:675 Array 6╎ ╎ ╎ ╎ ╎ 6 @Base/boot.jl:615 GenericMemory 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:676 Array ╎ ╎ ╎ ╎ 5 @CrystalNets/….jl:707 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 5 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 5 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ 5 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 5 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 5 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 5 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 5 @Base/sort.jl:800 _sort!(v::Vector{PeriodicVerte… 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:0 _sort!(v::Vector{PeriodicVerte… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:839 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:87 + ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:842 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1027 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:844 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1026 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:385 checkbounds 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:381 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:848 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1020 setindex! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1024 _setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:385 checkbounds ╎ ╎ ╎ ╎ 7 @CrystalNets/….jl:709 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 7 @Base/bitarray.jl:393 falses ╎ ╎ ╎ ╎ 7 @Base/…tarray.jl:395 falses 1╎ ╎ ╎ ╎ 1 @Base/array.jl:0 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 6 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 4 @Base/…tarray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:675 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory 3╎ ╎ ╎ ╎ ╎ 3 @Base/boot.jl:676 Array 2╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:39 BitArray ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:711 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/range.jl:921 iterate ╎ ╎ ╎ ╎ 1 @Base/range.jl:697 isempty ╎ ╎ ╎ ╎ 1 @Base/…rators.jl:424 > 1╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:715 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:668 getindex 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:0 checkbounds ╎ ╎ ╎ ╎ 2 @Base/bitarray.jl:669 getindex ╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:663 unsafe_bitgetindex ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1026 getindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:385 checkbounds 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1027 getindex ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:726 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:588 backtrack_to!(vmapprogress::Vect… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:597 backtrack_to!(vmapprogress::Vect… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:99 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:429 lastindex ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:396 eachindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:141 axes1 ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:102 axes ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:692 size ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:785 length 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:730 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 2 @Base/bitarray.jl:393 falses ╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:395 falses 1╎ ╎ ╎ ╎ 1 @Base/array.jl:0 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:37 BitArray 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:676 Array ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:736 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1026 getindex ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:385 checkbounds 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:381 checkbounds ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:750 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1027 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:760 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:554 attribute_next_available! ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:573 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1345 push! ╎ ╎ ╎ ╎ 1 @Base/array.jl:1348 _push! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1205 _growend! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1181 _growend_internal!(a::Vector{… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1101 array_new_memory 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ 1 @CrystalNets/…n.jl:814 find_first_valid_translation_unst… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:502 reduce_unstable_net(shrunk_net::C… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:136 PeriodicGraph ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:130 PeriodicGraph2D(nv::Int64, t::V… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:802 _sort!(v::Vector{PeriodicEdg… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1380 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1128 _sort!(v::Vector{Period… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:506 make_scratch ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:675 Array 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:615 GenericMemory ╎ ╎ ╎ 15 @CrystalNets/…ry.jl:56 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 15 @CrystalNets/…ry.jl:63 topological_genome(net::CrystalNet2… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:661 topological_key(net::CrystalNet2D{… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:283 find_candidates(net::CrystalNet2D… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:189 partition_by_coordination_sequence ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:192 partition_by_coordination_sequen… ╎ ╎ ╎ ╎ 1 @Base/array.jl:828 collect(itr::Base.Generator{Vector… ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ 1 none:? #partition_by_coordination_sequence##2 ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:148 coordination_sequence(g::Per… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:94 _neighborhood(g::PeriodicGra… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:393 falses ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:395 falses ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:71 BitArray ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:675 Array 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:615 GenericMemory ╎ ╎ ╎ 2 @CrystalNets/…y.jl:669 topological_key(net::CrystalNet2D{… ╎ ╎ ╎ 2 @CrystalNets/…y.jl:112 candidate_key ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:136 candidate_key(net::CrystalNet2D{R… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1782 sort ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1782 #sort#25 ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:800 _sort! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:837 _sort!(v::Vector{Tuple{SVec… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:153 candidate_key(net::CrystalNet2D{R… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1345 push! ╎ ╎ ╎ ╎ 1 @Base/array.jl:1348 _push! ╎ ╎ ╎ ╎ 1 @Base/array.jl:1205 _growend! ╎ ╎ ╎ ╎ 1 @Base/array.jl:1181 _growend_internal!(a::Vector{Tu… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1101 array_new_memory 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ 12 @CrystalNets/…y.jl:684 topological_key(net::CrystalNet2D{… ╎ ╎ ╎ 7 @CrystalNets/…y.jl:403 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:356 candidate_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 4 @StaticArrays/…jl:10 * ╎ ╎ ╎ ╎ 4 @StaticArrays/…jl:89 _mul ╎ ╎ ╎ ╎ 4 @StaticArrays/…l:108 macro expansion ╎ ╎ ╎ ╎ 3 @Base/…motion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 3 @Base/…otion.jl:631 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:441 * ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 div 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1046 div ╎ ╎ ╎ ╎ ╎ 2 @Base/…ional.jl:397 +(x::Rational{Int128}, y::Rat… ╎ ╎ ╎ ╎ ╎ 2 @Base/…cked.jl:297 checked_mul 2╎ ╎ ╎ ╎ ╎ 2 @Base/…cked.jl:264 mul_with_overflow(x::Int128,… ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:441 * ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:60 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:63 gcd ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:88 _gcd ╎ ╎ ╎ ╎ ╎ 1 @Base/…uncs.jl:69 absdiff 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:362 candidate_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:32 macro expansion ╎ ╎ ╎ ╎ 3 @Base/set.jl:570 allunique ╎ ╎ ╎ ╎ 2 @Base/set.jl:538 _hashed_allunique(C::Vector{Tuple{I… ╎ ╎ ╎ ╎ 2 @Base/set.jl:133 in! ╎ ╎ ╎ ╎ ╎ 2 @Base/dict.jl:339 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:159 rehash!(h::Dict{Tuple{Int64, In… 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:167 rehash!(h::Dict{Tuple{Int64, In… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:397 getindex ╎ ╎ ╎ ╎ 1 @Base/set.jl:539 _hashed_allunique(C::Vector{Tuple{I… ╎ ╎ ╎ ╎ 1 @Base/…array.jl:1241 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:1248 _iterate_abstractarray 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:381 checkbounds ╎ ╎ ╎ 1 @CrystalNets/…y.jl:421 topological_key_unstable(net::Cry… 1╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:0 vertex_swap!(edgs::Vector{Tuple{In… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:422 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:802 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1372 _sort!(v::Vector{Tuple{Int6… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1450 _issorted 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1027 getindex ╎ ╎ ╎ 1 @CrystalNets/…y.jl:425 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @Base/…erators.jl:398 < ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:3042 isless 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:0 cmp(A::Vector{Tuple{Int64, Int64,… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:430 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:730 iterate(cpci::CrystalNets.Contigu… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:674 _init_state ╎ ╎ ╎ ╎ 1 @Base/array.jl:622 zeros ╎ ╎ ╎ ╎ 1 @Base/array.jl:626 zeros ╎ ╎ ╎ ╎ 1 @Base/boot.jl:688 Array ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:675 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ 1 @CrystalNets/…y.jl:439 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:88 findbasis(edges::Vector{Tuple{Int… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:32 macro expansion ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:202 all ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:211 _all ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:88 (::CrystalNets.var"#findbasis##… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:10 * ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:89 _mul ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:108 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:446 *(x::Rational{BigInt}, y::In… ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:61 divgcd ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:512 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:508 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:172 tdiv_q(a::BigInt, b::BigIn… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! .... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_68800.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007413f952e1d0 Total snapshots: 410. Utilization: 0% ╎410 @Base/task.jl:1168 wait_forever() 409╎ 410 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_68800.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 18194674 (Pool: 18194006; Big: 668); GC: 16 [40] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/gASyq/test/runtests.jl:415 uv_unref at /workspace/srcdir/libuv/src/uv-common.c:603 unknown function (ip: 0x7ffeb6604e5f) at (unknown file) process_events at ./libuv.jl:133 [inlined] wait at ./task.jl:1233 yield at ./task.jl:1071 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:677 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:809 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:34 unknown function (ip: 0x78b4b39a5603) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:87 [inlined] #topological_genome#226 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 unknown function (ip: 0x78b4aefa722c) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_50232.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_60833.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x78b50fb2c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1696644419 (Pool: 1696639747; Big: 4672); GC: 551 PkgEval terminated after 2722.19s: test duration exceeded the time limit