Package evaluation to test AlgebraicPetri on Julia 1.14.0-DEV.1808 (1cd77b505e*) started at 2026-02-26T21:24:44.731 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.17s ################################################################################ # Installation # Installing AlgebraicPetri... Resolving package versions... ┌ Warning: tarball content of url https://api.github.com/repos/AlgebraicJulia/ACSets.jl/tarball/80ca69d6844aa5a1e67338b5362e393007c4c168 does not match git-tree-sha1, expected 80ca69d6844aa5a1e67338b5362e393007c4c168, got UInt8[0xd1, 0x1b, 0xa5, 0x13, 0x1c, 0x10, 0xde, 0x7a, 0x07, 0x55, 0x00, 0x30, 0xe6, 0x80, 0xaf, 0xa0, 0x1e, 0x32, 0xbf, 0xfb] └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1179 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Updating git-repo `https://github.com/AlgebraicJulia/ACSets.jl.git` Installed ACSets ─ v0.2.26 Updating `~/.julia/environments/v1.14/Project.toml` [4f99eebe] + AlgebraicPetri v0.10.0 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌃ [227ef7b5] + ACSets v0.2.26 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [4f99eebe] + AlgebraicPetri v0.10.0 [4fba245c] + ArrayInterface v7.22.0 [134e5e36] + Catlab v0.17.4 [d360d2e6] + ChainRulesCore v1.26.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.18.1 [a81c6b42] + Compose v0.9.6 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.2 [f0ffcf3b] + GATlab v0.2.2 [46192b85] + GPUArraysCore v0.2.0 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ee39098] + LabelledArrays v1.18.0 [9c8b4983] + LightXML v0.9.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.3 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [d236fae5] + PreallocationTools v1.1.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [8162dcfd] + PrettyPrint v0.2.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.48.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 [276daf66] + SpecialFunctions v2.7.1 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.4 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.15.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/VOudJ/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 48594.3 ms ✓ SymbolicUtils 34421.8 ms ✓ SciMLBase 7806.4 ms ✓ LabelledArrays 8009.7 ms ✓ SymbolicLimits 4496.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 5499.6 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 4159.5 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 5688.3 ms ✓ SciMLBase → SciMLBaseDistributionsExt 4057.4 ms ✓ SciMLBase → SciMLBaseMLStyleExt 3798.1 ms ✓ SCCNonlinearSolve WARNING: Detected access to binding `AlgebraicPetri.PetriNet` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `AlgebraicPetri.LabelledPetriNetUntyped` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `AlgebraicPetri.ReactionNet` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `AlgebraicPetri.LabelledReactionNetUntyped` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `AlgebraicPetri.PropertyPetriNet` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `AlgebraicPetri.PropertyLabelledPetriNetUntyped` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `AlgebraicPetri.PropertyReactionNet` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `AlgebraicPetri.PropertyLabelledReactionNetUntyped` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `BilayerNetworks.BilayerNetwork` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `BilayerNetworks.LabelledBilayerNetworkUntyped` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 40680.9 ms ✓ AlgebraicPetri 7955.8 ms ✓ SymbolicUtils → SymbolicUtilsLabelledArraysExt 20540.8 ms ✓ LinearSolve 9275.7 ms ✓ SciMLJacobianOperators 61840.4 ms ✓ Symbolics 3833.7 ms ✓ SCCNonlinearSolve → SCCNonlinearSolveChainRulesCoreExt 10128.9 ms ✓ LinearSolve → LinearSolveSparseArraysExt 8961.2 ms ✓ LinearSolve → LinearSolveForwardDiffExt 13713.0 ms ✓ LineSearch 20216.3 ms ✓ NonlinearSolveBase 15059.0 ms ✓ Symbolics → SymbolicsForwardDiffExt 14152.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 5266.8 ms ✓ LinearSolve → LinearSolveEnzymeExt 3897.9 ms ✓ LineSearch → LineSearchLineSearchesExt 4804.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4706.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3926.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 4831.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4400.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 5483.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 10579.2 ms ✓ BracketingNonlinearSolve 14407.7 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 31271.4 ms ✓ NonlinearSolveQuasiNewton 19741.4 ms ✓ NonlinearSolveSpectralMethods 55451.8 ms ✓ NonlinearSolveFirstOrder 4619.7 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 8731.3 ms ✓ DiffEqBase 7186.5 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 4996.0 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 4635.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 22448.3 ms ✓ SimpleNonlinearSolve 5194.7 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 6639.0 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 5226.6 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5355.8 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 6687.7 ms ✓ DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 13172.5 ms ✓ OrdinaryDiffEqCore 14299.0 ms ✓ DiffEqCallbacks 5105.1 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 10243.5 ms ✓ DiffEqNoiseProcess 5277.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 10775.2 ms ✓ JumpProcesses 39511.1 ms ✓ NonlinearSolve 9377.9 ms ✓ OrdinaryDiffEqStabilizedRK 6499.9 ms ✓ OrdinaryDiffEqFunctionMap 68982.5 ms ✓ OrdinaryDiffEqVerner 7514.1 ms ✓ OrdinaryDiffEqQPRK 7674.5 ms ✓ OrdinaryDiffEqSymplecticRK 10995.6 ms ✓ OrdinaryDiffEqLowOrderRK 8140.6 ms ✓ OrdinaryDiffEqFeagin 10335.5 ms ✓ OrdinaryDiffEqSSPRK 8037.1 ms ✓ OrdinaryDiffEqRKN 8599.6 ms ✓ OrdinaryDiffEqHighOrderRK 7781.4 ms ✓ OrdinaryDiffEqExplicitRK 16287.0 ms ✓ OrdinaryDiffEqTsit5 12126.4 ms ✓ OrdinaryDiffEqLinear 7680.6 ms ✓ OrdinaryDiffEqPRK 11082.6 ms ✓ OrdinaryDiffEqLowStorageRK 13878.6 ms ✓ OrdinaryDiffEqDifferentiation 327388.7 ms ✓ ModelingToolkit 7565.6 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 6593.7 ms ✓ OrdinaryDiffEqNordsieck 7764.4 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 61685.8 ms ✓ ModelingToolkit → MTKLabelledArraysExt 81158.3 ms ✓ Catalyst 13696.2 ms ✓ OrdinaryDiffEqExtrapolation 44917.2 ms ✓ OrdinaryDiffEqRosenbrock 15203.7 ms ✓ OrdinaryDiffEqExponentialRK 15131.6 ms ✓ OrdinaryDiffEqNonlinearSolve 57841.3 ms ✓ OrdinaryDiffEqFIRK 13965.9 ms ✓ OrdinaryDiffEqIMEXMultistep 14235.2 ms ✓ OrdinaryDiffEqStabilizedIRK 15633.2 ms ✓ OrdinaryDiffEqPDIRK 16223.8 ms ✓ OrdinaryDiffEqSDIRK 32884.1 ms ✓ OrdinaryDiffEqBDF 71902.7 ms ✓ OrdinaryDiffEqDefault 26427.3 ms ✓ OrdinaryDiffEq 87 dependencies successfully precompiled in 1759 seconds. 290 already precompiled. 1 dependency had output during precompilation: ┌ AlgebraicPetri │ WARNING: Detected access to binding `AlgebraicPetri.PetriNet` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `AlgebraicPetri.LabelledPetriNetUntyped` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `AlgebraicPetri.ReactionNet` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `AlgebraicPetri.LabelledReactionNetUntyped` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `AlgebraicPetri.PropertyPetriNet` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `AlgebraicPetri.PropertyLabelledPetriNetUntyped` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `AlgebraicPetri.PropertyReactionNet` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `AlgebraicPetri.PropertyLabelledReactionNetUntyped` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `BilayerNetworks.BilayerNetwork` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. │ WARNING: Detected access to binding `BilayerNetworks.LabelledBilayerNetworkUntyped` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. └ Precompilation completed after 1793.31s ################################################################################ # Testing # Testing AlgebraicPetri Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_1RIOKa/Project.toml` ⌃ [4f99eebe] ↓ AlgebraicPetri v0.10.0 ⇒ v0.8.10 [479239e8] + Catalyst v15.0.11 ⌅ [134e5e36] ↓ Catlab v0.17.4 ⇒ v0.14.17 ⌅ [961ee093] + ModelingToolkit v9.84.0 ⌃ [1dea7af3] + OrdinaryDiffEq v6.107.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_1RIOKa/Manifest.toml` [227ef7b5] - ACSets v0.2.26 [47edcb42] + ADTypes v1.21.0 [1520ce14] + AbstractTrees v0.4.5 [23cfdc9f] - AlgebraicInterfaces v0.1.4 ⌃ [4f99eebe] ↓ AlgebraicPetri v0.10.0 ⇒ v0.8.10 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4c555306] + ArrayLayouts v1.12.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.10.0 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v15.0.11 ⌅ [134e5e36] ↓ Catlab v0.17.4 ⇒ v0.14.17 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [3da002f7] ↓ ColorTypes v0.12.1 ⇒ v0.11.5 ⌅ [5ae59095] ↓ Colors v0.13.1 ⇒ v0.12.11 ⌅ [861a8166] ↓ Combinatorics v1.1.0 ⇒ v1.0.2 ⌅ [a80b9123] + CommonMark v0.10.3 [38540f10] + CommonSolve v0.2.6 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [b152e2b5] + CompositeTypes v0.1.4 [2569d6c7] + ConcreteStructs v0.2.3 [adafc99b] + CpuId v0.3.1 [2b5f629d] + DiffEqBase v6.210.0 [459566f4] + DiffEqCallbacks v4.12.0 [77a26b50] + DiffEqNoiseProcess v5.27.0 [a0c0ee7d] + DifferentiationInterface v0.7.16 [8d63f2c5] + DispatchDoctor v0.4.28 [31c24e10] + Distributions v0.25.123 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.11.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.18 [d4d017d3] + ExponentialUtilities v1.30.0 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.3.1 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.8.0 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] ↓ ForwardDiff v1.3.2 ⇒ v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [f0ffcf3b] - GATlab v0.2.2 [c145ed77] + GenericSchur v0.5.6 [c27321d9] + Glob v1.4.0 ⌃ [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.13 [0f8b85d8] - JSON3 v1.14.3 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.3.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.22.2 [ba0b0d4f] + Krylov v0.10.5 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.6 [d3d80556] + LineSearches v7.6.0 [7ed4a6bd] + LinearSolve v3.59.1 [e6f89c97] + LoggingExtras v1.2.0 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.84.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v8.0.0 ⌃ [8913a72c] + NonlinearSolve v4.12.0 ⌃ [be0214bd] + NonlinearSolveBase v2.11.2 ⌅ [5959db7a] + NonlinearSolveFirstOrder v1.11.1 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 ⌃ [1dea7af3] + OrdinaryDiffEq v6.107.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 ⌃ [6ad6398a] + OrdinaryDiffEqBDF v1.14.0 ⌃ [bbf590c4] + OrdinaryDiffEqCore v3.1.0 [50262376] + OrdinaryDiffEqDefault v1.12.0 ⌅ [4302a76b] + OrdinaryDiffEqDifferentiation v1.22.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.9.0 ⌃ [e0540318] + OrdinaryDiffEqExponentialRK v1.12.0 ⌃ [becaefa8] + OrdinaryDiffEqExtrapolation v1.13.0 ⌃ [5960d6e9] + OrdinaryDiffEqFIRK v1.20.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.9.0 ⌃ [9f002381] + OrdinaryDiffEqIMEXMultistep v1.11.0 [521117fe] + OrdinaryDiffEqLinear v1.10.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 ⌃ [b0944070] + OrdinaryDiffEqLowStorageRK v1.11.0 ⌃ [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.19.0 ⌃ [c9986a66] + OrdinaryDiffEqNordsieck v1.8.0 ⌃ [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.10.0 [5b33eab2] + OrdinaryDiffEqPRK v1.8.0 [04162be5] + OrdinaryDiffEqQPRK v1.8.0 [af6ede74] + OrdinaryDiffEqRKN v1.10.0 ⌃ [43230ef6] + OrdinaryDiffEqRosenbrock v1.22.0 ⌃ [2d112036] + OrdinaryDiffEqSDIRK v1.11.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.11.0 ⌃ [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.10.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] + OrdinaryDiffEqVerner v1.11.0 [90014a1f] + PDMats v0.11.37 [12d937ae] - PEG v1.0.4 [d96e819e] + Parameters v0.12.3 [2ae35dd2] - Permutations v0.4.23 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 ⌃ [d236fae5] ↓ PreallocationTools v1.1.2 ⇒ v0.4.34 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [ae5879a3] + ResettableStacks v1.2.0 [79098fc4] + Rmath v0.9.0 [9dfe8606] + SCCNonlinearSolve v1.11.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.144.2 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.15.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.11.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.23 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.9.0 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [856f2bd8] - StructTypes v1.11.0 ⌅ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.58.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [856f044c] + MKL_jll v2025.2.0+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [4607b0f0] + SuiteSparse [8dfed614] ~ Test ⇒ v1.11.0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_1RIOKa/Project.toml` ⌃ [4f99eebe] AlgebraicPetri v0.8.10 [479239e8] Catalyst v15.0.11 ⌅ [134e5e36] Catlab v0.14.17 [2ee39098] LabelledArrays v1.18.0 ⌅ [961ee093] ModelingToolkit v9.84.0 ⌃ [1dea7af3] OrdinaryDiffEq v6.107.0 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_1RIOKa/Manifest.toml` [47edcb42] ADTypes v1.21.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 ⌃ [4f99eebe] AlgebraicPetri v0.8.10 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [e2ed5e7c] Bijections v0.2.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.10.0 [2a0fbf3d] CPUSummary v0.2.7 [479239e8] Catalyst v15.0.11 ⌅ [134e5e36] Catlab v0.14.17 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 ⌅ [861a8166] Combinatorics v1.0.2 ⌅ [a80b9123] CommonMark v0.10.3 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.18.1 [a81c6b42] Compose v0.9.6 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.210.0 [459566f4] DiffEqCallbacks v4.12.0 [77a26b50] DiffEqNoiseProcess v5.27.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [8d63f2c5] DispatchDoctor v0.4.28 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 ⌃ [7c1d4256] DynamicPolynomials v0.6.3 [06fc5a27] DynamicQuantities v1.11.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.18 [d4d017d3] ExponentialUtilities v1.30.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.1 [1a297f60] FillArrays v1.16.0 [64ca27bc] FindFirstFunctions v1.8.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌃ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [6b9d7cbe] GeneralizedGenerated v0.3.3 [c145ed77] GenericSchur v0.5.6 [c27321d9] Glob v1.4.0 ⌃ [86223c79] Graphs v1.13.1 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.3.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [b14d175d] JuliaVariables v0.2.4 [ccbc3e58] JumpProcesses v9.22.2 [ba0b0d4f] Krylov v0.10.5 [b964fa9f] LaTeXStrings v1.4.0 [2ee39098] LabelledArrays v1.18.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [9c8b4983] LightXML v0.9.3 [87fe0de2] LineSearch v0.1.6 [d3d80556] LineSearches v7.6.0 [7ed4a6bd] LinearSolve v3.59.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [442fdcdd] Measures v0.3.3 [e1d29d7a] Missings v1.2.0 ⌅ [961ee093] ModelingToolkit v9.84.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 ⌃ [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v8.0.0 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 ⌃ [8913a72c] NonlinearSolve v4.12.0 ⌃ [be0214bd] NonlinearSolveBase v2.11.2 ⌅ [5959db7a] NonlinearSolveFirstOrder v1.11.1 [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 ⌃ [1dea7af3] OrdinaryDiffEq v6.107.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 ⌃ [6ad6398a] OrdinaryDiffEqBDF v1.14.0 ⌃ [bbf590c4] OrdinaryDiffEqCore v3.1.0 [50262376] OrdinaryDiffEqDefault v1.12.0 ⌅ [4302a76b] OrdinaryDiffEqDifferentiation v1.22.0 [9286f039] OrdinaryDiffEqExplicitRK v1.9.0 ⌃ [e0540318] OrdinaryDiffEqExponentialRK v1.12.0 ⌃ [becaefa8] OrdinaryDiffEqExtrapolation v1.13.0 ⌃ [5960d6e9] OrdinaryDiffEqFIRK v1.20.0 [101fe9f7] OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.9.0 ⌃ [9f002381] OrdinaryDiffEqIMEXMultistep v1.11.0 [521117fe] OrdinaryDiffEqLinear v1.10.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.10.0 ⌃ [b0944070] OrdinaryDiffEqLowStorageRK v1.11.0 ⌃ [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.19.0 ⌃ [c9986a66] OrdinaryDiffEqNordsieck v1.8.0 ⌃ [5dd0a6cf] OrdinaryDiffEqPDIRK v1.10.0 [5b33eab2] OrdinaryDiffEqPRK v1.8.0 [04162be5] OrdinaryDiffEqQPRK v1.8.0 [af6ede74] OrdinaryDiffEqRKN v1.10.0 ⌃ [43230ef6] OrdinaryDiffEqRosenbrock v1.22.0 ⌃ [2d112036] OrdinaryDiffEqSDIRK v1.11.0 [669c94d9] OrdinaryDiffEqSSPRK v1.11.0 ⌃ [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.10.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] OrdinaryDiffEqVerner v1.11.0 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e409e4f3] PoissonRandom v0.4.7 [f517fe37] Polyester v0.7.19 [1d0040c9] PolyesterWeave v0.2.2 ⌃ [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [8162dcfd] PrettyPrint v0.2.0 ⌅ [08abe8d2] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:61 Test threw exception Expression: to_graphviz(sir_petri) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.PetriNet) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::AlgebraicPetri.BilayerNetworks.AbstractLabelledBilayerNetwork; kwargs...) @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/tv741/src/BilayerNetworks.jl:243 to_graphviz(!Matched::Catlab.CategoricalAlgebra.CatElements.AbstractElements; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizCategories.jl:58 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:557 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:62 Test threw exception Expression: to_graphviz(sir_lpetri) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.LabelledPetriNet) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::AlgebraicPetri.BilayerNetworks.AbstractLabelledBilayerNetwork; kwargs...) @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/tv741/src/BilayerNetworks.jl:243 to_graphviz(!Matched::Catlab.CategoricalAlgebra.CatElements.AbstractElements; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizCategories.jl:58 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:557 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:63 Test threw exception Expression: to_graphviz(sir_rxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.ReactionNet{Function, Int64}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::AlgebraicPetri.BilayerNetworks.AbstractLabelledBilayerNetwork; kwargs...) @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/tv741/src/BilayerNetworks.jl:243 to_graphviz(!Matched::Catlab.CategoricalAlgebra.CatElements.AbstractElements; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizCategories.jl:58 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:557 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:64 Test threw exception Expression: to_graphviz(open_sir_rxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::Catlab.CategoricalAlgebra.StructuredCospans.StructuredCospan{Catlab.CategoricalAlgebra.StructuredCospans.DiscreteACSet{Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration}, Tuple{(:concentration, :S, :Concentration)}}, Tuple{Function, Int64}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}}}, AlgebraicPetri.ReactionNet{Function, Int64}}, Catlab.CategoricalAlgebra.FreeDiagrams.Multicospan{AlgebraicPetri.ReactionNet{Function, Int64}, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.ReactionNet{Function, Int64}, AlgebraicPetri.ReactionNet{Function, Int64}}, StaticArraysCore.SVector{2, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.ReactionNet{Function, Int64}, AlgebraicPetri.ReactionNet{Function, Int64}}}}, StaticArraysCore.SVector{2, Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration}, Tuple{(:concentration, :S, :Concentration)}}, Tuple{Function, Int64}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}}}}}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::AlgebraicPetri.BilayerNetworks.AbstractLabelledBilayerNetwork; kwargs...) @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/tv741/src/BilayerNetworks.jl:243 to_graphviz(!Matched::Catlab.CategoricalAlgebra.CatElements.AbstractElements; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizCategories.jl:58 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:557 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:65 Test threw exception Expression: to_graphviz(sir_lrxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.LabelledReactionNet{Number, Int64}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::AlgebraicPetri.BilayerNetworks.AbstractLabelledBilayerNetwork; kwargs...) @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/tv741/src/BilayerNetworks.jl:243 to_graphviz(!Matched::Catlab.CategoricalAlgebra.CatElements.AbstractElements; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizCategories.jl:58 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:557 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:66 Test threw exception Expression: to_graphviz(open_sir_lrxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::Catlab.CategoricalAlgebra.StructuredCospans.StructuredCospan{Catlab.CategoricalAlgebra.StructuredCospans.DiscreteACSet{Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:concentration, :S, :Concentration), (:sname, :S, :Name)}}, Tuple{Number, Int64, Symbol}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}, sname::Catlab.ColumnImplementations.DenseColumn{Symbol, Vector{Symbol}}}}, AlgebraicPetri.LabelledReactionNet{Number, Int64}}, Catlab.CategoricalAlgebra.FreeDiagrams.Multicospan{AlgebraicPetri.LabelledReactionNet{Number, Int64}, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration), (:tname, :T, :Name), (:sname, :S, :Name)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.LabelledReactionNet{Number, Int64}, AlgebraicPetri.LabelledReactionNet{Number, Int64}}, StaticArraysCore.SVector{2, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration), (:tname, :T, :Name), (:sname, :S, :Name)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.LabelledReactionNet{Number, Int64}, AlgebraicPetri.LabelledReactionNet{Number, Int64}}}}, StaticArraysCore.SVector{2, Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:concentration, :S, :Concentration), (:sname, :S, :Name)}}, Tuple{Number, Int64, Symbol}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}, sname::Catlab.ColumnImplementations.DenseColumn{Symbol, Vector{Symbol}}}}}}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::AlgebraicPetri.BilayerNetworks.AbstractLabelledBilayerNetwork; kwargs...) @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/tv741/src/BilayerNetworks.jl:243 to_graphviz(!Matched::Catlab.CategoricalAlgebra.CatElements.AbstractElements; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizCategories.jl:58 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/types.jl:557 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:778 [inlined] Petri: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/AlgebraicPetri.jl:11 Got exception outside of a @test LoadError: UndefVarError: `⋅` not defined in `Main.TestPetri` Suggestion: check for spelling errors or missing imports. Hint: a global variable of this name also exists in LinearAlgebra. Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/petri.jl:12 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [3] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/AlgebraicPetri.jl:12 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [5] macro expansion @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/AlgebraicPetri.jl:12 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [7] top-level scope @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/runtests.jl:4 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2243 [inlined] [9] macro expansion @ ~/.julia/packages/AlgebraicPetri/Oxc0f/test/runtests.jl:4 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:324 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:517 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/algebraicpetri/petri.jl:1 Test Summary: | Pass Error Total Time AlgebraicPetri | 86 7 93 4m51.8s Core | 8 8 40.5s Types | 78 6 84 4m08.9s Petri | 1 1 1.8s RNG of the outermost testset: Random.Xoshiro(0xc181b430d0d41f75, 0xa103ee3cd2ca514f, 0xa6160c9af30c0076, 0xf53844682659d91a, 0x97859cc714e40566) ERROR: LoadError: Some tests did not pass: 86 passed, 0 failed, 7 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/test/runtests.jl:3 Testing failed after 318.19s ERROR: LoadError: Package AlgebraicPetri errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:323 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2181.2s: package tests unexpectedly errored