Package evaluation to test EcologicalNetworksDynamics on Julia 1.14.0-DEV.1786 (45ee44a91e*) started at 2026-02-23T02:07:26.380 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 12.06s ################################################################################ # Installation # Installing EcologicalNetworksDynamics... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [2fd9189a] + EcologicalNetworksDynamics v0.3.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [aae01518] + BandedMatrices v1.11.0 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.20.0 [7227322d] + BoundaryValueDiffEqAscher v1.10.0 [56b672f2] + BoundaryValueDiffEqCore v2.0.0 [85d9eb09] + BoundaryValueDiffEqFIRK v1.11.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.11.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.10.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.11.0 [70df07ce] + BracketingNonlinearSolve v1.10.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [abce61dc] + Decimals v0.5.1 [bcd4f6db] + DelayDiffEq v5.68.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.208.0 [459566f4] + DiffEqCallbacks v4.12.0 [77a26b50] + DiffEqNoiseProcess v5.27.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [0c46a032] + DifferentialEquations v7.17.0 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 [4e289a0a] + EnumX v1.0.6 [f151be2c] + EnzymeCore v0.8.18 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.30.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [9d29842c] + FastAlmostBandedMatrices v0.1.6 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.3.1 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [68eda718] + GeoFormatTypes v0.4.5 [cf35fbd7] + GeoInterface v1.6.0 [86223c79] + Graphs v1.13.4 [19dc6840] + HCubature v1.8.0 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [de52edbc] + Integrals v5.1.0 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.22.0 [ba0b0d4f] + Krylov v0.10.5 [73f95e8e] + LatticeRules v0.0.1 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.9.5 [2d8b4e74] + LevyArea v1.0.0 [87fe0de2] + LineSearch v0.1.6 [d3d80556] + LineSearches v7.6.0 [7ed4a6bd] + LinearSolve v3.59.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [b8b640a6] + Mangal v0.5.1 [d125e4d3] + ManualMemory v0.1.8 [a3b82374] + MatrixFactorizations v3.1.3 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [4886b29c] + MonteCarloIntegration v0.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v8.0.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.16.0 ⌃ [be0214bd] + NonlinearSolveBase v2.11.2 [5959db7a] + NonlinearSolveFirstOrder v2.0.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [4d8831e6] + OpenSSL v1.6.1 [bca83a33] + OptimizationBase v5.0.0 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.108.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 [6ad6398a] + OrdinaryDiffEqBDF v1.18.0 [bbf590c4] + OrdinaryDiffEqCore v3.8.0 [50262376] + OrdinaryDiffEqDefault v1.12.0 [4302a76b] + OrdinaryDiffEqDifferentiation v2.0.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.9.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.13.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.15.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.22.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.12.0 [521117fe] + OrdinaryDiffEqLinear v1.10.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.12.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.20.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.9.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.11.0 [5b33eab2] + OrdinaryDiffEqPRK v1.8.0 [04162be5] + OrdinaryDiffEqQPRK v1.8.0 [af6ede74] + OrdinaryDiffEqRKN v1.9.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.23.0 [2d112036] + OrdinaryDiffEqSDIRK v1.12.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.11.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.11.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] + OrdinaryDiffEqVerner v1.11.0 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [8a4e6c94] + QuasiMonteCarlo v0.3.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.48.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.2.0 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.142.1 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.15.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [727e6d20] + SimpleNonlinearSolve v2.11.0 [699a6c99] + SimpleTraits v0.9.5 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.2.1 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.7.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.9.0 [90137ffa] + StaticArrays v1.9.17 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [9672c7b4] + SteadyStateDiffEq v2.9.0 [789caeaf] + StochasticDiffEq v6.94.1 [7792a7ef] + StrideArraysCore v0.5.8 [f22f4433] + StringCases v0.1.0 [c3572dad] + Sundials v5.1.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ca45d3f4] + SuiteSparse32_jll v7.12.1+0 [fb77eaff] + Sundials_jll v7.5.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/VOudJ/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 5515.2 ms ✓ Mangal 21.2 ms ✓ NonlinearSolveQuasiNewton 101.2 ms ✓ NonlinearSolveFirstOrder 12181.8 ms ✓ OrdinaryDiffEqDifferentiation 19645.1 ms ✓ BoundaryValueDiffEqCore 14702.5 ms ✓ NonlinearSolve → NonlinearSolveSundialsExt 8253.4 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 20680.3 ms ✓ BoundaryValueDiffEqAscher 210757.3 ms ✓ BoundaryValueDiffEqFIRK 148390.7 ms ✓ BoundaryValueDiffEqMIRK 108717.9 ms ✓ BoundaryValueDiffEqShooting 23769.3 ms ✓ BoundaryValueDiffEqMIRKN 14019.9 ms ✓ OrdinaryDiffEqExtrapolation 44342.9 ms ✓ OrdinaryDiffEqRosenbrock 16023.3 ms ✓ OrdinaryDiffEqExponentialRK 15917.4 ms ✓ OrdinaryDiffEqNonlinearSolve 53018.0 ms ✓ BoundaryValueDiffEq 58701.7 ms ✓ OrdinaryDiffEqFIRK 14547.8 ms ✓ OrdinaryDiffEqIMEXMultistep 14379.8 ms ✓ OrdinaryDiffEqStabilizedIRK 15753.6 ms ✓ OrdinaryDiffEqPDIRK 17300.4 ms ✓ OrdinaryDiffEqSDIRK 22069.3 ms ✓ StochasticDiffEq 32245.7 ms ✓ OrdinaryDiffEqBDF 68097.5 ms ✓ OrdinaryDiffEqDefault 26319.4 ms ✓ OrdinaryDiffEq 25795.5 ms ✓ DelayDiffEq ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("764a87c0-6b3e-53db-9096-fe964310641d"), "BoundaryValueDiffEq") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2840  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2694  [4] macro expansion  @ ./loading.jl:2621 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2585  [7] require  @ ./loading.jl:2561 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/DifferentialEquations/rpSZ8/src/DifferentialEquations.jl:12  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:323  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3288  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3130  [18] include_string  @ ./loading.jl:3140 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/rpSZ8/src/DifferentialEquations.jl:1 in expression starting at stdin:5 ✗ DifferentialEquations ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("0c46a032-eb83-5123-abaf-570d42b7fbaa"), "DifferentialEquations") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2840  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2694  [4] macro expansion  @ ./loading.jl:2621 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2585  [7] require  @ ./loading.jl:2561 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] top-level scope  @ ~/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/Internals.jl:31  [11] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:324  [12] top-level scope  @ ~/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/EcologicalNetworksDynamics.jl:60  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:323  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3288  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3130  [18] include_string  @ ./loading.jl:3140 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/Internals.jl:5 in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/EcologicalNetworksDynamics.jl:1 in expression starting at stdin:5 ✗ EcologicalNetworksDynamics 25 dependencies successfully precompiled in 1056 seconds. 350 already precompiled. Precompilation completed after 1076.08s ################################################################################ # Testing # Testing EcologicalNetworksDynamics Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_Z4DevN/Project.toml` [5224ae11] + CompatHelperLocal v0.1.29 [e30172f5] + Documenter v1.17.0 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 ⌃ [86223c79] ↓ Graphs v1.13.4 ⇒ v1.13.1 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [a4af3ec5] + SyntaxTree v1.0.1 Updating `/tmp/jl_Z4DevN/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [00ebfdb7] + CSTParser v3.4.3 ⌅ [a80b9123] + CommonMark v0.8.16 [5224ae11] + CompatHelperLocal v0.1.29 ⌅ [864edb3b] ↓ DataStructures v0.19.3 ⇒ v0.18.22 ⌃ [bcd4f6db] ↓ DelayDiffEq v5.68.0 ⇒ v5.66.0 [e30172f5] + Documenter v1.17.0 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.4.0 ⌃ [86223c79] ↓ Graphs v1.13.4 ⇒ v1.13.1 [b5f81e59] + IOCapture v1.0.0 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [0e77f7df] + LazilyInitializedFields v1.3.0 [d0879d2d] + MarkdownAST v0.1.3 ⌃ [1dea7af3] ↓ OrdinaryDiffEq v6.108.0 ⇒ v6.105.0 ⌃ [89bda076] ↓ OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 ⇒ v1.8.0 ⌃ [6ad6398a] ↓ OrdinaryDiffEqBDF v1.18.0 ⇒ v1.13.0 ⌅ [bbf590c4] ↓ OrdinaryDiffEqCore v3.8.0 ⇒ v2.3.0 ⌃ [50262376] ↓ OrdinaryDiffEqDefault v1.12.0 ⇒ v1.11.0 ⌅ [4302a76b] ↓ OrdinaryDiffEqDifferentiation v2.0.0 ⇒ v1.21.0 ⌃ [9286f039] ↓ OrdinaryDiffEqExplicitRK v1.9.0 ⇒ v1.7.0 ⌃ [e0540318] ↓ OrdinaryDiffEqExponentialRK v1.13.0 ⇒ v1.11.0 ⌃ [becaefa8] ↓ OrdinaryDiffEqExtrapolation v1.15.0 ⇒ v1.12.0 ⌃ [5960d6e9] ↓ OrdinaryDiffEqFIRK v1.22.0 ⇒ v1.19.0 ⌃ [101fe9f7] ↓ OrdinaryDiffEqFeagin v1.8.0 ⇒ v1.7.0 ⌃ [d3585ca7] ↓ OrdinaryDiffEqFunctionMap v1.9.0 ⇒ v1.8.0 ⌃ [d28bc4f8] ↓ OrdinaryDiffEqHighOrderRK v1.9.0 ⇒ v1.8.0 ⌃ [9f002381] ↓ OrdinaryDiffEqIMEXMultistep v1.12.0 ⇒ v1.10.0 ⌃ [521117fe] ↓ OrdinaryDiffEqLinear v1.10.0 ⇒ v1.9.0 ⌃ [1344f307] ↓ OrdinaryDiffEqLowOrderRK v1.10.0 ⇒ v1.9.0 ⌃ [b0944070] ↓ OrdinaryDiffEqLowStorageRK v1.12.0 ⇒ v1.10.0 ⌃ [127b3ac7] ↓ OrdinaryDiffEqNonlinearSolve v1.20.0 ⇒ v1.18.1 ⌃ [c9986a66] ↓ OrdinaryDiffEqNordsieck v1.9.0 ⇒ v1.7.0 ⌃ [5dd0a6cf] ↓ OrdinaryDiffEqPDIRK v1.11.0 ⇒ v1.9.0 ⌃ [5b33eab2] ↓ OrdinaryDiffEqPRK v1.8.0 ⇒ v1.7.0 ⌃ [04162be5] ↓ OrdinaryDiffEqQPRK v1.8.0 ⇒ v1.7.0 ⌃ [af6ede74] ↓ OrdinaryDiffEqRKN v1.9.0 ⇒ v1.8.0 ⌃ [43230ef6] ↓ OrdinaryDiffEqRosenbrock v1.23.0 ⇒ v1.21.0 ⌃ [2d112036] ↓ OrdinaryDiffEqSDIRK v1.12.0 ⇒ v1.10.0 ⌃ [669c94d9] ↓ OrdinaryDiffEqSSPRK v1.11.0 ⇒ v1.10.0 ⌃ [e3e12d00] ↓ OrdinaryDiffEqStabilizedIRK v1.11.0 ⇒ v1.9.0 ⌃ [358294b1] ↓ OrdinaryDiffEqStabilizedRK v1.8.0 ⇒ v1.7.0 ⌃ [fa646aed] ↓ OrdinaryDiffEqSymplecticRK v1.11.0 ⇒ v1.10.0 ⌃ [b1df2697] ↓ OrdinaryDiffEqTsit5 v1.9.0 ⇒ v1.8.0 ⌃ [79d7bb75] ↓ OrdinaryDiffEqVerner v1.11.0 ⇒ v1.9.0 [2792f1a3] + RegistryInstances v0.1.0 ⌃ [789caeaf] ↓ StochasticDiffEq v6.94.1 ⇒ v6.90.0 [a4af3ec5] + SyntaxTree v1.0.1 [0796e94c] + Tokenize v0.5.29 [2e619515] + Expat_jll v2.7.3+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [3fa0cd96] + REPL v1.11.0 [1a1011a3] + SharedArrays v1.11.0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. 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v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... == Test internals. ============================================================= [ Info: Seed set to 23670. test-utils.jl Test Summary: | Pass Total Time Identify metabolic classes, producers, preys and predators | 41 41 7.3s Test Summary: | Pass Total Time Find predators and preys of a given species | 8 8 0.1s Test Summary: | Pass Total Time Find predators sharing at least one prey | 8 8 0.3s Test Summary: | Pass Total Time Find number of resources of each species. | 3 3 0.1s PASSED ------------------------------------------ inputs/test-foodwebs.jl Test Summary: | Pass Total Time Foodwebs from adjacency list. | 22 22 29.7s Test Summary: | Pass Total Time FoodWebs from structural model. | 69 69 13.7s Test Summary: | Pass Total Time Warning if foodweb has disconnected species. | 9 9 1.7s PASSED ------------------------------------------ inputs/test-biological_rates.jl Test Summary: | Pass Total Time Constructors for allometric parameters | 4 4 0.1s Test Summary: | Pass Total Time Computing allometric rates | 6 6 4.4s Test Summary: | Pass Total Time Helper functions for allometric rate computation | 4 4 0.1s PASSED ------------------------------------------ inputs/test-functional_response.jl Test Summary: | Pass Total Time Assimilation efficiency | 3 3 1.5s Test Summary: | Pass Total Time Bioenergetic functional response parameters | 8 8 1.6s Test Summary: | Pass Total Time Linear functional response parameters | 6 6 1.3s Test Summary: | Pass Total Time Classic functional response parameters | 10 10 1.3s Test Summary: | Pass Total Time Bioenergetic functional response functor | 31 31 4.7s Test Summary: | Pass Total Time Linear functional response functor | 22 22 1.9s Test Summary: | Pass Total Time Classic functional response functor | 39 39 12.2s Test Summary: | Pass Total Time Generation of default feeding rates | 8 8 1.7s PASSED ------------------------------------------ inputs/test-environment.jl Test Summary: | Pass Total Time Environment | 2 2 0.0s PASSED ------------------------------------------ inputs/test-nontrophic_interactions.jl Test Summary: | Pass Total Time Non-trophic Interactions: build MultiplexNetwork. | 44 44 12.3s Test Summary: | Pass Total Time Non-trophic Interactions: find potential links. | 9 9 0.5s Test Summary: | Pass Total Time Non-trophic Interactions: draw randomly links. | 60 60 0.1s Test Summary: | Pass Total Time Non-trophic Interactions: build non-trophic adjacency matrix. | 8 8 0.6s PASSED ------------------------------------------ inputs/test-producer_competition.jl Test Summary: | Pass Total Time Build LogisticGrowth with producer competition | 11 11 23.6s PASSED ------------------------------------------ inputs/test-temperature_dependent_rates.jl ┌ Warning: 'A' contains disconnected species w.r.t. trophic interactions. └ @ EcologicalNetworksDynamics.Internals ~/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/inputs/foodwebs.jl:213 Test Summary: | Pass Total Time Constructors for exponential Boltzmann-Arrhenius parameters | 5 5 0.2s Test Summary: | Pass Total Time Computing exponential Boltzmann-Arhennius rates | 10 10 9.0s Test Summary: | Pass Total Time Helper functions for exponential BA rate computation | 1 1 0.3s Test Summary: | Pass Total Time Exponential Boltzmann-Arrhenius parameter customisation | 5 5 0.2s PASSED ------------------------------------------ model/test-productivity.jl ┌ Warning: Using arrays or dicts to store parameters of different types can hurt performance. │ Consider using tuples instead. └ @ SciMLBase ~/.julia/packages/SciMLBase/YgvDS/src/performance_warnings.jl:32 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 94 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm23ObjectSizeOffsetVisitor13visitCallBaseERNS_8CallBaseE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11InstVisitorINS_23ObjectSizeOffsetVisitorENS_10OffsetSpanEE16delegateCallInstERNS_8CallInstE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11InstVisitorINS_23ObjectSizeOffsetVisitorENS_10OffsetSpanEE5visitERNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23ObjectSizeOffsetVisitor12computeValueEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23ObjectSizeOffsetVisitor11computeImplEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23ObjectSizeOffsetVisitor7computeEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13getObjectSizeEPKNS_5ValueERmRKNS_10DataLayoutEPKNS_17TargetLibraryInfoENS_14ObjectSizeOptsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL19isObjectSmallerThanPKN4llvm5ValueENS_8TypeSizeERKNS_10DataLayoutERKNS_17TargetLibraryInfoEb.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult10aliasCheckEPKNS_5ValueENS_12LocationSizeES3_S4_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9AAResults5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults30getSimplePointerDependencyFromERKNS_14MemoryLocationEbNS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1ENS_10BasicBlockEEELb0ELb0EEEPS8_PS7_PjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults24getPointerDependencyFromERKNS_14MemoryLocationEbNS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1ENS_10BasicBlockEEELb0ELb0EEEPS8_PS7_PjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults23getNonLocalInfoForBlockEPNS_11InstructionERKNS_14MemoryLocationEbPNS_10BasicBlockEPSt6vectorINS_16NonLocalDepEntryESaIS9_EEjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults27getNonLocalPointerDepFromBBEPNS_11InstructionERKNS_12PHITransAddrERKNS_14MemoryLocationEbPNS_10BasicBlockERNS_15SmallVectorImplINS_17NonLocalDepResultEEERNS_13SmallDenseMapISA_PNS_5ValueELj16ENS_12DenseMapInfoISA_vEENS_6detail12DenseMapPairISA_SH_EEEEbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults28getNonLocalPointerDependencyEPNS_11InstructionERNS_15SmallVectorImplINS_17NonLocalDepResultEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass19processNonLocalLoadEPNS_8LoadInstE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:787 operator() at /source/src/jitlayers.cpp:1520 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1480 [inlined] operator() at /source/src/jitlayers.cpp:1656 [inlined] addModule at /source/src/jitlayers.cpp:2129 jl_compile_codeinst_now at /source/src/jitlayers.cpp:688 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:882 jl_compile_method_internal at /source/src/gf.c:3652 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4317 #solve_up#29 at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:614 solve_up at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:603 [inlined] #solve#28 at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:587 solve at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:575 unknown function (ip: 0x7a85b08cd094) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 #simulate#119 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:198 simulate at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:109 unknown function (ip: 0x7a85b08c56c0) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 #simulates#1 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:70 simulates at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:44 unknown function (ip: 0x7a8587382db1) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7a85c6d27462) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 top-level scope at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:125 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_invoke at /source/src/gf.c:4127 ijl_eval_thunk at /source/src/toplevel.c:757 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_eval_module_expr at /source/src/toplevel.c:263 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7a85c6d27462) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_65189.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_34930.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a85d00f4249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_73028.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007aca13a5eef0 Total snapshots: 465. Utilization: 0% ╎465 @Base/task.jl:1168 wait_forever() 464╎ 465 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_73028.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 22688416 (Pool: 22687612; Big: 804); GC: 22 [94] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/model/test-productivity.jl:1 _ZNK4llvm10DataLayout22getIndexTypeSizeInBitsEPNS_4TypeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm5Value33stripAndAccumulateConstantOffsetsERKNS_10DataLayoutERNS_5APIntEbbNS_12function_refIFbRS0_S5_EEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23ObjectSizeOffsetVisitor11computeImplEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23ObjectSizeOffsetVisitor7computeEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13getObjectSizeEPKNS_5ValueERmRKNS_10DataLayoutEPKNS_17TargetLibraryInfoENS_14ObjectSizeOptsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL19isObjectSmallerThanPKN4llvm5ValueENS_8TypeSizeERKNS_10DataLayoutERKNS_17TargetLibraryInfoEb.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult10aliasCheckEPKNS_5ValueENS_12LocationSizeES3_S4_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9AAResults5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18DSEState11isOverwriteEPKN4llvm11InstructionES4_RKNS1_14MemoryLocationES7_RlS8_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18DSEState15getDomMemoryDefEPN4llvm9MemoryDefEPNS1_12MemoryAccessERKNS1_14MemoryLocationEPKNS1_5ValueERjSC_bSC_b at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_1L19eliminateDeadStoresERN4llvm8FunctionERNS0_9AAResultsERNS0_9MemorySSAERNS0_13DominatorTreeERNS0_17PostDominatorTreeERKNS0_17TargetLibraryInfoERKNS0_8LoopInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7DSEPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:787 operator() at /source/src/jitlayers.cpp:1520 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1480 [inlined] operator() at /source/src/jitlayers.cpp:1656 [inlined] addModule at /source/src/jitlayers.cpp:2129 jl_compile_codeinst_now at /source/src/jitlayers.cpp:688 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:882 jl_compile_method_internal at /source/src/gf.c:3652 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4317 #solve_up#29 at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:614 solve_up at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:603 [inlined] #solve#28 at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:587 solve at /home/pkgeval/.julia/packages/DiffEqBase/2gXT1/src/solve.jl:575 unknown function (ip: 0x7a85b08cd094) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 #simulate#119 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:198 simulate at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:109 unknown function (ip: 0x7a85b08c56c0) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 #simulates#1 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:70 simulates at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:44 unknown function (ip: 0x7a8587382db1) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7a85c6d27462) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 top-level scope at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:125 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_invoke at /source/src/gf.c:4127 ijl_eval_thunk at /source/src/toplevel.c:757 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_eval_module_expr at /source/src/toplevel.c:263 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 unknown function (ip: 0x7a85c6d27462) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:324 IncludeInto at ./Base.jl:325 jfptr_IncludeInto_65189.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_34930.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a85d00f4249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 156836722 (Pool: 156834845; Big: 1877); GC: 113 PkgEval terminated after 2735.74s: test duration exceeded the time limit