Package evaluation to test BiochemNetABC on Julia 1.14.0-DEV.1730 (9c1e1fa299*) started at 2026-02-20T01:20:36.778


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 12.09s


################################################################################
# Installation
#

Installing BiochemNetABC...
   Resolving package versions...
   Installed Conda ── v1.10.3
   Installed PyCall ─ v1.96.4
    Updating `~/.julia/environments/v1.14/Project.toml`
  [eb87d800] + BiochemNetABC v0.1.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [9d0fb3db] + ARFIMA v0.4.0
  [1520ce14] + AbstractTrees v0.4.5
  [66dad0bd] + AliasTables v1.1.3
  [eb87d800] + BiochemNetABC v0.1.0
  [d1d4a3ce] + BitFlags v0.1.9
  [944b1d66] + CodecZlib v0.7.8
  [35d6a980] + ColorSchemes v3.31.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [34da2185] + Compat v4.18.1
  [f0e56b4a] + ConcurrentUtilities v2.5.1
  [8f4d0f93] + Conda v1.10.3
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [7806a523] + DecisionTree v0.12.4
  [8bb1440f] + DelimitedFiles v1.9.1
  [b4f34e82] + Distances v0.10.12
  [aaf54ef3] + DistributedArrays v0.6.9
  [31c24e10] + Distributions v0.25.123
  [ffbed154] + DocStringExtensions v0.9.5
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [c87230d0] + FFMPEG v0.4.5
  [1a297f60] + FillArrays v1.16.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [069b7b12] + FunctionWrappers v1.1.3
  [28b8d3ca] + GR v0.73.22
  [42e2da0e] + Grisu v1.0.2
  [cd3eb016] + HTTP v1.10.19
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.5
  [18e54dd8] + IntegerMathUtils v0.1.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [1019f520] + JLFzf v0.1.11
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.4.0
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  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.2.0
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  [b8a86587] + NearestNeighbors v0.4.27
  [4d8831e6] + OpenSSL v1.6.1
  [bac558e1] + OrderedCollections v1.8.1
⌃ [90014a1f] + PDMats v0.11.35
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [ccf2f8ad] + PlotThemes v3.3.0
  [995b91a9] + PlotUtils v1.4.4
  [91a5bcdd] + Plots v1.41.6
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [08abe8d2] + PrettyTables v3.2.3
  [27ebfcd6] + Primes v0.5.7
  [43287f4e] + PtrArrays v1.3.0
  [438e738f] + PyCall v1.96.4
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  [3cdcf5f2] + RecipesBase v1.3.4
  [01d81517] + RecipesPipeline v0.6.12
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
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  [6e75b9c4] + ScikitLearnBase v0.5.0
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⌅ [2913bbd2] + StatsBase v0.33.21
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  [61579ee1] + Ghostscript_jll v9.55.1+0
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⌅ [e9f186c6] + Libffi_jll v3.4.7+0
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⌅ [30392449] + Pixman_jll v0.44.2+0
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  [ce943373] + Qt6ShaderTools_jll v6.8.2+1
  [e99dba38] + Qt6Wayland_jll v6.8.2+2
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⌅ [1270edf5] + x264_jll v10164.0.1+0
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  [9fa8497b] + Future v1.11.0
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  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
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  [44cfe95a] + Pkg v1.14.0
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  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
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  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.18.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.5+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log`
    Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log`

Installation failed after 16.83s

ERROR: LoadError: Error building `PyCall`: 
┌ Info: Using the Python distribution in the Conda package by default.
└ To use a different Python version, set ENV["PYTHON"]="pythoncommand" and re-run Pkg.build("PyCall").
[ Info: Downloading miniconda installer ...
ERROR: LoadError: RequestError: Could not resolve host: github.com while requesting https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh
Stacktrace:
  [1] (::Downloads.var"#23#24"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader})(easy::Downloads.Curl.Easy)
    @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:484
  [2] with_handle(f::Downloads.var"#23#24"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader}, handle::Downloads.Curl.Easy)
    @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Curl/Curl.jl:105
  [3] #21
    @ /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:395 [inlined]
  [4] arg_write(f::Downloads.var"#21#22"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader}, arg::IOStream)
    @ ArgTools /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:134
  [5] #19
    @ /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:394 [inlined]
  [6] arg_read
    @ /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:76 [inlined]
  [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing)
    @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:393
  [8] request
    @ /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:355 [inlined]
  [9] #7
    @ /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:273 [inlined]
 [10] open(f::Downloads.var"#7#8"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String, Base.RefValue{Downloads.Response}}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool})
    @ Base ./io.jl:429
 [11] open_nolock
    @ /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:35 [inlined]
 [12] arg_write(f::Function, arg::String)
    @ ArgTools /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:103
 [13] #download#5
    @ /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:272 [inlined]
 [14] download
    @ /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:252 [inlined]
 [15] _install_conda(env::String, force::Bool)
    @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:298
 [16] _install_conda(env::String)
    @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:270
 [17] runconda(args::Cmd, env::String)
    @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:180
 [18] add(pkg::String, env::String; channel::String, satisfied_skip_solve::Bool, args::Cmd)
    @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:343
 [19] add
    @ ~/.julia/packages/Conda/05AVg/src/Conda.jl:326 [inlined]
 [20] kwcall(::@NamedTuple{satisfied_skip_solve::Bool}, ::typeof(Conda.add), pkg::String)
    @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:326
 [21] top-level scope
    @ ~/.julia/packages/PyCall/1gn3u/deps/build.jl:79
 [22] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [23] top-level scope
    @ none:8
 [24] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:310
 [26] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/PyCall/1gn3u/deps/build.jl:43
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] (::Pkg.Operations.var"#151#152"{Bool, Pkg.Types.Context, String, PackageSpec, String})()
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1952
  [3] withenv(::Pkg.Operations.var"#151#152"{Bool, Pkg.Types.Context, String, PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}})
    @ Base ./env.jl:265
  [4] (::Pkg.Operations.var"#214#215"{Bool, Bool, Bool, Pkg.Operations.var"#151#152"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache})()
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2807
  [5] with_temp_env(fn::Pkg.Operations.var"#214#215"{Bool, Bool, Bool, Pkg.Operations.var"#151#152"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache}, temp_env::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2709
  [6] #sandbox_with_temp_env#212
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2766 [inlined]
  [7] sandbox_with_temp_env
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2759 [inlined]
  [8] (::Pkg.Operations.var"#219#220"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#151#152"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2876
  [9] mktempdir(fn::Pkg.Operations.var"#219#220"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#151#152"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
    @ Base.Filesystem ./file.jl:936
 [10] mktempdir(fn::Function, parent::String)
    @ Base.Filesystem ./file.jl:932
 [11] sandbox(fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override_in::Pkg.Types.Project; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2822
 [12] sandbox
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2812 [inlined]
 [13] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1929
 [14] build_versions
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1840 [inlined]
 [15] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2339
 [16] add
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2273 [inlined]
 [17] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:379
 [18] kwcall(::@NamedTuple{io::IOContext{IO}}, ::typeof(Pkg.API.add), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:321
 [19] add(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
 [20] add(pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
 [21] add(pkg::PackageSpec)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [22] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:116
 [23] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [24] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [25] _start()
    @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:113

PkgEval skipped after 44.72s: package could not be installed