Package evaluation to test MCMCTempering on Julia 1.14.0-DEV.1720 (f38c537ec6*) started at 2026-02-17T22:01:09.143 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.62s ################################################################################ # Installation # Installing MCMCTempering... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.19.3 Installed DefineSingletons ──────────── v0.1.2 Installed MicroCollections ──────────── v0.1.4 Installed FFTA ──────────────────────── v0.3.1 Installed MCMCTempering ─────────────── v0.3.2 Installed Adapt ─────────────────────── v4.4.0 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.16.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed KernelDensity ─────────────── v0.6.11 Installed AliasTables ───────────────── v1.1.3 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed RecipesBase ───────────────── v1.3.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ProgressLogging ───────────── v0.1.6 Installed StatsBase ─────────────────── v0.34.10 Installed ConsoleProgressMonitor ────── v0.1.2 Installed StatsAPI ──────────────────── v1.8.0 Installed Statistics ────────────────── v1.11.1 Installed InitialValues ─────────────── v0.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed OffsetArrays ──────────────── v1.17.0 Installed PrecompileTools ───────────── v1.3.3 Installed ProgressMeter ─────────────── v1.11.0 Installed LoggingExtras ─────────────── v1.2.0 Installed ConcreteStructs ───────────── v0.2.3 Installed StaticArraysCore ──────────── v1.4.4 Installed StaticArrays ──────────────── v1.9.16 Installed ArgCheck ──────────────────── v2.5.0 Installed MCMCDiagnosticTools ───────── v0.3.16 Installed LogDensityProblems ────────── v2.2.0 Installed ChainRulesCore ────────────── v1.26.0 Installed IrrationalConstants ───────── v0.2.6 Installed Ratios ────────────────────── v0.4.5 Installed AxisAlgorithms ────────────── v1.1.0 Installed IntegerMathUtils ──────────── v0.1.3 Installed AbstractFFTs ──────────────── v1.5.0 Installed QuadGK ────────────────────── v2.11.2 Installed StringManipulation ────────── v0.4.2 Installed TerminalLoggers ───────────── v0.1.7 Installed BangBang ──────────────────── v0.3.40 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Requires ──────────────────── v1.3.1 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed PrettyTables ──────────────── v2.4.0 Installed Interpolations ────────────── v0.16.2 Installed Distributions ─────────────── v0.25.123 Installed SplittablesBase ───────────── v0.1.15 Installed StatsFuns ─────────────────── v1.5.2 Installed MuladdMacro ───────────────── v0.2.4 Installed WoodburyMatrices ──────────── v1.1.0 Installed PtrArrays ─────────────────── v1.3.0 Installed Tables ────────────────────── v1.12.1 Installed AbstractMCMC ──────────────── v4.4.2 Installed Reexport ──────────────────── v1.2.2 Installed SpecialFunctions ──────────── v2.7.1 Installed InverseFunctions ──────────── v0.1.17 Installed Setfield ──────────────────── v1.1.2 Installed IntervalSets ──────────────── v0.7.13 Installed Transducers ───────────────── v0.4.80 Installed Preferences ───────────────── v1.5.1 Installed Missings ──────────────────── v1.2.0 Installed ScientificTypesBase ───────── v3.1.0 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Baselet ───────────────────── v0.1.1 Installed MCMCChains ────────────────── v6.0.7 Installed SortingAlgorithms ─────────── v1.2.2 Installed Primes ────────────────────── v0.5.7 Installed PDMats ────────────────────── v0.11.37 Installed RangeArrays ───────────────── v0.3.2 Installed AxisArrays ────────────────── v0.4.8 Installed NaturalSort ───────────────── v1.0.0 Installed IterTools ─────────────────── v1.10.0 Installed StatisticalTraits ─────────── v3.5.0 Installed Crayons ───────────────────── v4.1.1 Installed DocStringExtensions ───────── v0.9.5 Installed MLJModelInterface ─────────── v1.12.1 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [ce233488] + MCMCTempering v0.3.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [80f14c24] + AbstractMCMC v4.4.2 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 ⌅ [198e06fe] + BangBang v0.3.40 [9718e550] + Baselet v0.1.1 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [b86e33f2] + FFTA v0.3.1 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [5ab0869b] + KernelDensity v0.6.11 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] + LogDensityProblems v2.2.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌅ [c7f686f2] + MCMCChains v6.0.7 [be115224] + MCMCDiagnosticTools v0.3.16 [ce233488] + MCMCTempering v0.3.2 [e80e1ace] + MLJModelInterface v1.12.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [128add7d] + MicroCollections v0.1.4 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [c020b1a1] + NaturalSort v1.0.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 ⌅ [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [30f210dd] + ScientificTypesBase v3.1.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 ⌃ [28d57a85] + Transducers v0.4.80 [efce3f68] + WoodburyMatrices v1.1.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4412.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/B6c9D/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 4334.6 ms ✓ MacroTools 1637.7 ms ✓ InlineStrings 793.4 ms ✓ Reexport 984.3 ms ✓ MappedArrays 1173.2 ms ✓ ConstructionBase 2136.4 ms ✓ IrrationalConstants 912.8 ms ✓ ChangesOfVariables 812.3 ms ✓ DataValueInterfaces 1379.3 ms ✓ StatsAPI 1187.1 ms ✓ IterTools 1083.6 ms ✓ IntervalSets 1006.2 ms ✓ Functors 2098.8 ms ✓ Combinatorics 943.9 ms ✓ ArgCheck 798.3 ms ✓ CommonSolve 892.5 ms ✓ LaTeXStrings 2341.0 ms ✓ Baselet 1181.3 ms ✓ Statistics 929.8 ms ✓ Tricks 947.4 ms ✓ StaticArraysCore 1092.2 ms ✓ LRUCache 830.7 ms ✓ PtrArrays 779.3 ms ✓ NaturalSort 886.2 ms ✓ DataAPI 789.7 ms ✓ RealDot 3351.1 ms ✓ UnsafeAtomics 878.5 ms ✓ InvertedIndices 1648.5 ms ✓ RandomNumbers 958.5 ms ✓ InverseFunctions 1160.1 ms ✓ CompositionsBase 1168.1 ms ✓ AbstractTrees 845.9 ms ✓ SimpleUnPack 1632.6 ms ✓ InitialValues 842.8 ms ✓ MuladdMacro 1077.3 ms ✓ AbstractFFTs 892.9 ms ✓ EnumX 2045.0 ms ✓ FillArrays 839.0 ms ✓ ExprTools 819.7 ms ✓ IntegerMathUtils 787.3 ms ✓ ConcreteStructs 873.4 ms ✓ RangeArrays 1288.6 ms ✓ OrderedCollections 1501.2 ms ✓ FunctionWrappers 901.9 ms ✓ HashArrayMappedTries 1039.8 ms ✓ ProgressLogging 1133.6 ms ✓ DocStringExtensions 866.7 ms ✓ DefineSingletons 1582.0 ms ✓ OffsetArrays 781.5 ms ✓ IteratorInterfaceExtensions 1699.1 ms ✓ Crayons 972.1 ms ✓ DelimitedFiles 998.6 ms ✓ NaNMath 996.6 ms ✓ Requires 1762.0 ms ✓ PDMats 1256.5 ms ✓ SparseInverseSubset 1259.8 ms ✓ WoodburyMatrices 1937.1 ms ✓ SentinelArrays 1137.6 ms ✓ LoggingExtras 1722.4 ms ✓ ProgressMeter 1245.9 ms ✓ ScientificTypesBase 1143.5 ms ✓ Compat 1173.6 ms ✓ Preferences 796.0 ms ✓ InplaceOps 5773.8 ms ✓ Lazy 1734.5 ms ✓ CommonSubexpressions 803.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 4147.3 ms ✓ ChangesOfVariables → ChangesOfVariablesTestExt 794.6 ms ✓ IntervalSets → IntervalSetsRandomExt 781.2 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1331.9 ms ✓ Statistics → SparseArraysExt 800.6 ms ✓ IntervalSets → IntervalSetsStatisticsExt 881.6 ms ✓ DiffResults 875.8 ms ✓ LRUCache → SerializationExt 1045.8 ms ✓ AliasTables 1014.0 ms ✓ Missings 1050.8 ms ✓ PooledArrays 1001.0 ms ✓ Atomix 1954.7 ms ✓ Random123 903.1 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1681.4 ms ✓ InverseFunctions → InverseFunctionsTestExt 939.6 ms ✓ ChangesOfVariables → ChangesOfVariablesInverseFunctionsExt 745.4 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 809.5 ms ✓ LeftChildRightSiblingTrees 4121.5 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1443.4 ms ✓ FillArrays → FillArraysSparseArraysExt 965.7 ms ✓ FillArrays → FillArraysStatisticsExt 1014.1 ms ✓ RuntimeGeneratedFunctions 1216.9 ms ✓ Primes 826.9 ms ✓ FunctionWrappersWrappers 1449.4 ms ✓ Libtask 899.7 ms ✓ ScopedValues 1284.6 ms ✓ LogExpFunctions 1089.8 ms ✓ SymbolicIndexingInterface 1971.4 ms ✓ LogDensityProblems 812.6 ms ✓ TableTraits 859.9 ms ✓ Ratios 956.9 ms ✓ Adapt 1453.9 ms ✓ FillArrays → FillArraysPDMatsExt 1393.7 ms ✓ AxisAlgorithms 942.9 ms ✓ ConsoleProgressMonitor 1325.4 ms ✓ StatisticalTraits 865.7 ms ✓ Compat → CompatLinearAlgebraExt 946.4 ms ✓ PrecompileTools 1131.4 ms ✓ JLLWrappers 1601.6 ms ✓ TruncatedStacktraces 2916.5 ms ✓ Setfield 1666.9 ms ✓ AxisArrays 1895.0 ms ✓ DensityInterface 5170.1 ms ✓ Accessors 1737.4 ms ✓ TerminalLoggers 2483.0 ms ✓ FFTA 841.0 ms ✓ LogExpFunctions → LogExpFunctionsChangesOfVariablesExt 812.7 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1119.7 ms ✓ LogDensityProblemsAD 1802.3 ms ✓ Tables 1683.0 ms ✓ ArrayInterface 1298.2 ms ✓ GPUArraysCore 844.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 3122.2 ms ✓ MLJModelInterface 2741.0 ms ✓ ChainRulesCore 3837.2 ms ✓ DataStructures 3155.2 ms ✓ StringManipulation 13868.5 ms ✓ StaticArrays 2751.2 ms ✓ RecipesBase 1380.1 ms ✓ Rmath_jll 1387.9 ms ✓ OpenSpecFun_jll 3572.9 ms ✓ SplittablesBase 1720.8 ms ✓ Accessors → TestExt 2486.8 ms ✓ Accessors → IntervalSetsExt 2530.2 ms ✓ Accessors → LinearAlgebraExt 1551.5 ms ✓ StructArrays 1911.9 ms ✓ BangBang 1243.7 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1383.7 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1345.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 2064.2 ms ✓ Optimisers 2348.7 ms ✓ ZygoteRules 907.3 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 3320.1 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1707.3 ms ✓ SortingAlgorithms 2889.6 ms ✓ QuadGK WARNING: Imported binding Base._sortslices was undeclared at import time during import to NamedArrays. WARNING: Imported binding Base._negdims was undeclared at import time during import to NamedArrays. WARNING: Imported binding Base.DimSelector was undeclared at import time during import to NamedArrays. ERROR: LoadError: invalid method definition in NamedArrays: exported function Base._sortslices does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/NamedArrays/spYk1/src/rearrange.jl:106  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/NamedArrays/spYk1/src/NamedArrays.jl:35  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3288  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3130  [9] include_string  @ ./loading.jl:3140 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/NamedArrays/spYk1/src/rearrange.jl:106 in expression starting at /home/pkgeval/.julia/packages/NamedArrays/spYk1/src/NamedArrays.jl:9 in expression starting at stdin:5 ✗ NamedArrays 26211.0 ms ✓ PrettyTables 1358.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 1401.3 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1401.7 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1552.8 ms ✓ FillArrays → FillArraysStaticArraysExt 1389.9 ms ✓ Adapt → AdaptStaticArraysExt 1545.8 ms ✓ Accessors → StaticArraysExt 1294.7 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 1472.6 ms ✓ Rmath 4757.5 ms ✓ SpecialFunctions 6801.6 ms ✓ Roots 1330.0 ms ✓ StructArrays → StructArraysSparseArraysExt 846.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 876.4 ms ✓ StructArrays → StructArraysAdaptExt 1562.4 ms ✓ StructArrays → StructArraysStaticArraysExt 1060.9 ms ✓ Accessors → StructArraysExt 1930.7 ms ✓ MicroCollections 1062.6 ms ✓ BangBang → BangBangChainRulesCoreExt 1066.7 ms ✓ BangBang → BangBangStructArraysExt 1662.2 ms ✓ BangBang → BangBangStaticArraysExt 4376.2 ms ✓ SciMLOperators 3146.5 ms ✓ RecursiveArrayTools 4808.9 ms ✓ StatsBase 67500.1 ms ✓ DataFrames 7575.0 ms ✓ KernelAbstractions 3891.4 ms ✓ Interpolations 3941.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2094.6 ms ✓ HypergeometricFunctions 1288.9 ms ✓ DiffRules 1180.8 ms ✓ Roots → RootsChainRulesCoreExt 11808.9 ms ✓ ChainRules 6676.8 ms ✓ Transducers 10560.7 ms ✓ SciMLBase 5367.3 ms ✓ BangBang → BangBangDataFramesExt 2647.3 ms ✓ KernelAbstractions → SparseArraysExt 1873.0 ms ✓ KernelAbstractions → LinearAlgebraExt 2671.1 ms ✓ StatsFuns 6350.7 ms ✓ ForwardDiff 5302.8 ms ✓ Transducers → TransducersDataFramesExt 4120.2 ms ✓ AbstractMCMC 12527.0 ms ✓ NNlib 3501.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1060.1 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 10118.7 ms ✓ Distributions 2181.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1915.8 ms ✓ LogDensityProblemsAD → LogDensityProblemsADForwardDiffExt 1400.7 ms ✓ Roots → RootsForwardDiffExt 2651.0 ms ✓ Interpolations → InterpolationsForwardDiffExt 5437.1 ms ✓ AdvancedHMC 3156.0 ms ✓ AbstractPPL 2406.9 ms ✓ NNlib → NNlibSpecialFunctionsExt 1928.6 ms ✓ NNlib → NNlibForwardDiffExt 2694.1 ms ✓ Distributions → DistributionsTestExt 2307.7 ms ✓ Distributions → DistributionsDensityInterfaceExt 3123.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 4838.3 ms ✓ MCMCDiagnosticTools 12968.3 ms ✓ Tracker 4402.3 ms ✓ AdvancedPS 3881.1 ms ✓ AdvancedMH 4254.2 ms ✓ EllipticalSliceSampling 3622.7 ms ✓ KernelDensity 8274.2 ms ✓ Bijectors 9239.5 ms ✓ DistributionsAD 3573.7 ms ✓ Tracker → TrackerPDMatsExt 2968.2 ms ✓ LogDensityProblemsAD → LogDensityProblemsADTrackerExt 3504.5 ms ✓ ArrayInterface → ArrayInterfaceTrackerExt 3617.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTrackerExt 3587.8 ms ✓ AdvancedMH → AdvancedMHStructArraysExt 3686.9 ms ✓ AdvancedMH → AdvancedMHForwardDiffExt 8684.6 ms ✓ MCMCChains 21848.9 ms ✓ DynamicPPL 3438.3 ms ✓ DistributionsAD → DistributionsADForwardDiffExt 7426.7 ms ✓ DistributionsAD → DistributionsADTrackerExt 12992.8 ms ✓ MCMCTempering 6503.8 ms ✓ AdvancedHMC → AdvancedHMCMCMCChainsExt 6449.9 ms ✓ AdvancedMH → AdvancedMHMCMCChainsExt 5705.9 ms ✓ AdvancedVI 13051.9 ms ✓ Turing 219 dependencies successfully precompiled in 662 seconds. 22 already precompiled. Precompilation completed after 690.12s ################################################################################ # Testing # Testing MCMCTempering Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_Kd8enK/Project.toml` ⌅ [0bf59076] + AdvancedHMC v0.4.6 ⌅ [5b7e9947] + AdvancedMH v0.7.5 ⌅ [76274a88] + Bijectors v0.10.8 [a93c6f00] + DataFrames v1.8.1 ⌅ [f6369f11] + ForwardDiff v0.10.39 [996a588d] + LogDensityProblemsAD v1.13.1 ⌃ [be115224] ↓ MCMCDiagnosticTools v0.3.16 ⇒ v0.3.15 [ce233488] + MCMCTempering v0.3.2 ⌅ [fce5fe82] + Turing v0.24.4 Updating `/tmp/jl_Kd8enK/Manifest.toml` ⌅ [7a57a42e] + AbstractPPL v0.5.4 [7d9f7c33] + Accessors v0.1.43 ⌅ [79e6a3ab] ↓ Adapt v4.4.0 ⇒ v3.7.2 ⌅ [0bf59076] + AdvancedHMC v0.4.6 ⌅ [5b7e9947] + AdvancedMH v0.7.5 ⌅ [576499cb] + AdvancedPS v0.4.3 ⌅ [b5ca4192] + AdvancedVI v0.1.6 ⌃ [4fba245c] + ArrayInterface v7.7.1 [a9b6321e] + Atomix v1.1.2 ⌅ [76274a88] + Bijectors v0.10.8 [082447d4] + ChainRules v1.73.0 [9e997f8a] + ChangesOfVariables v0.1.10 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [2569d6c7] + ConcreteStructs v0.2.3 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] ↓ DataStructures v0.19.3 ⇒ v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [b429d917] + DensityInterface v0.4.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ced4e74d] + DistributionsAD v0.6.58 ⌅ [366bfd00] + DynamicPPL v0.21.6 ⌅ [cad2338a] + EllipticalSliceSampling v1.1.0 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.3.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 [076d061b] + HashArrayMappedTries v0.2.0 [842dd82b] + InlineStrings v1.4.5 [505f98c9] + InplaceOps v0.3.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [63c18a36] + KernelAbstractions v0.9.40 [8ac3fa9e] + LRUCache v1.6.2 [50d2b5c4] + Lazy v0.15.1 ⌅ [6f1fad26] + Libtask v0.8.8 [996a588d] + LogDensityProblemsAD v1.13.1 ⌃ [be115224] ↓ MCMCDiagnosticTools v0.3.16 ⇒ v0.3.15 [ce233488] + MCMCTempering v0.3.2 [dbb5928d] + MappedArrays v0.4.3 ⌃ [872c559c] + NNlib v0.9.31 [77ba4419] + NaNMath v1.1.3 ⌅ [86f7a689] + NamedArrays v0.9.8 ⌃ [3bd65402] + Optimisers v0.2.15 ⌃ [90014a1f] ↓ PDMats v0.11.37 ⇒ v0.11.35 [2dfb63ee] + PooledArrays v1.4.3 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [c1ae055f] + RealDot v0.1.0 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [f2b01f46] + Roots v2.2.10 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 ⌅ [0bca4576] + SciMLBase v1.92.0 ⌅ [c0aeaf25] + SciMLOperators v0.2.12 [7e506255] + ScopedValues v1.5.0 [91c51154] + SentinelArrays v1.4.9 [ce78b400] + SimpleUnPack v1.1.0 [dc90abb0] + SparseInverseSubset v0.1.2 ⌅ [2913bbd2] ↓ StatsBase v0.34.10 ⇒ v0.33.21 ⌃ [09ab397b] + StructArrays v0.6.18 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [9f7883ad] + Tracker v0.2.38 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 ⌅ [fce5fe82] + Turing v0.24.4 [013be700] + UnsafeAtomics v0.3.0 [700de1a5] + ZygoteRules v0.2.7 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_Kd8enK/Project.toml` ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [0bf59076] AdvancedHMC v0.4.6 ⌅ [5b7e9947] AdvancedMH v0.7.5 ⌅ [76274a88] Bijectors v0.10.8 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [1a297f60] FillArrays v1.16.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [6fdf6af0] LogDensityProblems v2.2.0 [996a588d] LogDensityProblemsAD v1.13.1 ⌅ [c7f686f2] MCMCChains v6.0.7 ⌃ [be115224] MCMCDiagnosticTools v0.3.15 [ce233488] MCMCTempering v0.3.2 [efcf1570] Setfield v1.1.2 [10745b16] Statistics v1.11.1 ⌅ [fce5fe82] Turing v0.24.4 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Kd8enK/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.5.4 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 ⌅ [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.4.6 ⌅ [5b7e9947] AdvancedMH v0.7.5 ⌅ [576499cb] AdvancedPS v0.4.3 ⌅ [b5ca4192] AdvancedVI v0.1.6 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [a9b6321e] Atomix v1.1.2 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 ⌅ [198e06fe] BangBang v0.3.40 [9718e550] Baselet v0.1.1 ⌅ [76274a88] Bijectors v0.10.8 [082447d4] ChainRules v1.73.0 [d360d2e6] ChainRulesCore v1.26.0 [9e997f8a] ChangesOfVariables v0.1.10 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.123 [ced4e74d] DistributionsAD v0.6.58 [ffbed154] DocStringExtensions v0.9.5 ⌅ [366bfd00] DynamicPPL v0.21.6 ⌅ [cad2338a] EllipticalSliceSampling v1.1.0 [4e289a0a] EnumX v1.0.6 [e2ba6199] ExprTools v0.1.10 [b86e33f2] FFTA v0.3.1 [1a297f60] FillArrays v1.16.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] Functors v0.3.0 ⌅ [46192b85] GPUArraysCore v0.1.5 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [505f98c9] InplaceOps v0.3.0 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [63c18a36] KernelAbstractions v0.9.40 [5ab0869b] KernelDensity v0.6.11 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌅ [6f1fad26] Libtask v0.8.8 [6fdf6af0] LogDensityProblems v2.2.0 [996a588d] LogDensityProblemsAD v1.13.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 ⌅ [c7f686f2] MCMCChains v6.0.7 ⌃ [be115224] MCMCDiagnosticTools v0.3.15 [ce233488] MCMCTempering v0.3.2 [e80e1ace] MLJModelInterface v1.12.1 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.3 ⌅ [128add7d] MicroCollections v0.1.4 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.4 ⌃ [872c559c] NNlib v0.9.31 [77ba4419] NaNMath v1.1.3 ⌅ [86f7a689] NamedArrays v0.9.8 [c020b1a1] NaturalSort v1.0.0 [6fe1bfb0] OffsetArrays v1.17.0 ⌃ [3bd65402] Optimisers v0.2.15 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 ⌅ [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.6 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v2.38.10 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [7e49a35a] RuntimeGeneratedFunctions v0.5.17 ⌅ [0bca4576] SciMLBase v1.92.0 ⌅ [c0aeaf25] SciMLOperators v0.2.12 [30f210dd] ScientificTypesBase v3.1.0 [7e506255] ScopedValues v1.5.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.7.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 ⌃ [09ab397b] StructArrays v0.6.18 ⌅ [2efcf032] SymbolicIndexingInterface v0.2.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [9f7883ad] Tracker v0.2.38 ⌃ [28d57a85] Transducers v0.4.80 [410a4b4d] Tricks v0.1.13 [781d530d] TruncatedStacktraces v1.4.0 ⌅ [fce5fe82] Turing v0.24.4 [013be700] UnsafeAtomics v0.3.0 [efce3f68] WoodburyMatrices v1.1.0 [700de1a5] ZygoteRules v0.2.7 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition (::Type{Main.StateHistoryCallback{A, F} where F where A})(Any, Any) in module Main at /home/pkgeval/.julia/packages/MCMCTempering/movdr/test/utils.jl:17 overwritten at /home/pkgeval/.julia/packages/MCMCTempering/movdr/test/utils.jl:21. The temperature was sorted to ensure decreasing order. ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 453.82 │ :param_1 => 515.794 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 607.056 └ :param_1 => 397.766 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 453.82 │ :param_1 => 515.794 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 629.477 └ :param_1 => 634.2 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 453.82 │ :param_1 => 515.794 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 347.209 └ :param_1 => 396.675 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 453.82 │ :param_1 => 515.794 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 495.449 └ :param_1 => 459.996 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 453.82 │ :param_1 => 515.794 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :param_2 => 516.131 └ :param_1 => 585.658 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :m => 1328.43 │ :s => 1481.63 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :m => 1578.41 └ :s => 1779.0 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :m => 1328.43 │ :s => 1481.63 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :m => 2528.84 └ :s => 2819.86 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :m => 320.081 │ :s => 392.746 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :m => 286.604 └ :s => 369.665 ┌ Info: │ ess = │ Dict{Symbol, Float64} with 2 entries: │ :m => 320.081 │ :s => 392.746 │ ess_tempered = │ Dict{Symbol, Float64} with 2 entries: │ :m => 947.574 └ :s => 1339.75 ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (0.9645937998021831, 1.0, 0.0755694552443462) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.0843925176937002, 1.118033988749895, 0.08711288565985678) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.2480113240571375, 1.25, 0.09711265968068102) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.4876068387825554, 1.3975424859373684, 0.12097449111233022) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.5779817957179658, 1.5624999999999998, 0.11962446026026714) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.7537227911114022, 1.7469281074217102, 0.12457264488919793) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.102631386083414, 1.9531249999999996, 0.16851854214596096) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.285650985692578, 2.1836601342771376, 0.17348743650332044) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.5314053233486304, 2.4414062499999996, 0.20726767098620147) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.834495244233527, 2.729575167846422, 0.250404029055891) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (3.2060628307138623, 3.051757812499999, 0.3523787287065433) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.0199546544725961, 1.0, 0.08010530406456406) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.1018231546966677, 1.118033988749895, 0.08129244133733757) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.2180304559465154, 1.25, 0.10414194362758747) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.4411400880730236, 1.3975424859373684, 0.11265751662596486) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.5552867548866178, 1.5624999999999998, 0.12385192231156994) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.757728591460109, 1.7469281074217102, 0.16011953840736973) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.9300400814033551, 1.9531249999999996, 0.1763387775868651) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.0355983596469636, 2.1836601342771376, 0.18301374359168537) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.4698991628467524, 2.4414062499999996, 0.2798425576714853) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.6859868310563804, 2.729575167846422, 0.26524624289050275) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (3.135039547051193, 3.051757812499999, 0.4848768855098902) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (0.9962426164876632, 1.0, 0.08162518733565362) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.151643457305784, 1.118033988749895, 0.08371388903934612) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.3503483259573013, 1.25, 0.10008433386134118) chain 3: Test Failed at /home/pkgeval/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:71 Expression: all((isapprox(std(chain[sym]), std_true[sym], atol = atol[sym]) for sym = names(chain, :parameters))) Evaluated: all(Base.Generator{Vector{Symbol}, var"#24#25"{Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}, Dict{Symbol, Float64}, Dict{Symbol, Float64}}}(var"#24#25"{Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}, Dict{Symbol, Float64}, Dict{Symbol, Float64}}(MCMC chain (1000×2×1 Array{Float64, 3}), Dict(:param_1 => 1.25), Dict(:param_1 => 0.10008433386134118)), [:param_1])) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] test_std(chain::Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}, std_true::Dict{Symbol, Float64}; n::Int64, kwargs::@Kwargs{}) @ Main ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:71 [3] test_std @ ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:67 [inlined] [4] macro expansion @ ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:123 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2325 [inlined] [6] test_chains_with_monotonic_variance(chains::Vector{Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}}, mean_true::Zeros{Float64, 1, Tuple{Base.OneTo{Int64}}}, std_true::Vector{Dict{Symbol, Float64}}; significance::Float64, kwargs::@Kwargs{}) @ Main ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:121 ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.3683478498765518, 1.3975424859373684, 0.10404388769793736) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.5844572049848609, 1.5624999999999998, 0.1057261204637085) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.7413679704632565, 1.7469281074217102, 0.12858664005059953) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.8961436398644156, 1.9531249999999996, 0.14687141296034092) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.272552991395033, 2.1836601342771376, 0.19101510793775553) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.4385873322946403, 2.4414062499999996, 0.20150755407770704) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.836065703355171, 2.729575167846422, 0.3259624299147183) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (3.1100256658608, 3.051757812499999, 0.3118521159644494) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (0.9962426164876632, 1.0, 0.08162518733565362) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.151643457305784, 1.118033988749895, 0.08371388903934612) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.3503483259573013, 1.25, 0.10008433386134118) chain 3: Test Failed at /home/pkgeval/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:71 Expression: all((isapprox(std(chain[sym]), std_true[sym], atol = atol[sym]) for sym = names(chain, :parameters))) Evaluated: all(Base.Generator{Vector{Symbol}, var"#24#25"{Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}, Dict{Symbol, Float64}, Dict{Symbol, Float64}}}(var"#24#25"{Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}, Dict{Symbol, Float64}, Dict{Symbol, Float64}}(MCMC chain (1000×2×1 Array{Float64, 3}), Dict(:param_1 => 1.25), Dict(:param_1 => 0.10008433386134118)), [:param_1])) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] test_std(chain::Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}, std_true::Dict{Symbol, Float64}; n::Int64, kwargs::@Kwargs{}) @ Main ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:71 [3] test_std @ ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:67 [inlined] [4] macro expansion @ ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:123 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2325 [inlined] [6] test_chains_with_monotonic_variance(chains::Vector{Chains{Float64, AxisArrays.AxisArray{Float64, 3, Array{Float64, 3}, Tuple{AxisArrays.Axis{:iter, StepRange{Int64, Int64}}, AxisArrays.Axis{:var, Vector{Symbol}}, AxisArrays.Axis{:chain, UnitRange{Int64}}}}, Missing, @NamedTuple{parameters::Vector{Symbol}, internals::Vector{Symbol}}, @NamedTuple{}}}, mean_true::Zeros{Float64, 1, Tuple{Base.OneTo{Int64}}}, std_true::Vector{Dict{Symbol, Float64}}; significance::Float64, kwargs::@Kwargs{}) @ Main ~/.julia/packages/MCMCTempering/movdr/test/test_utils.jl:121 ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.3683478498765518, 1.3975424859373684, 0.10404388769793736) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.5844572049848609, 1.5624999999999998, 0.1057261204637085) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.7413679704632565, 1.7469281074217102, 0.12858664005059953) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (1.8961436398644156, 1.9531249999999996, 0.14687141296034092) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.272552991395033, 2.1836601342771376, 0.19101510793775553) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.4385873322946403, 2.4414062499999996, 0.20150755407770704) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (2.836065703355171, 2.729575167846422, 0.3259624299147183) ┌ Info: std │ [(std(chain[sym]), std_true[sym], atol[sym]) for sym = names(chain, :parameters)] = │ 1-element Vector{Tuple{Float64, Float64, Float64}}: └ (3.1100256658608, 3.051757812499999, 0.3118521159644494) Test Summary: | Pass Fail Total Time MCMCTempering.jl | 1519 2 1521 4m54.5s Swapping | 34 34 1.4s Simple MvNormal with no expected swaps | 9 9 26.8s GMM 1D | 9 9 8.6s MvNormal 2D with different swap strategies | 53 53 51.7s Turing.jl | 26 26 2m09.6s AbstractMCMC | 1262 1262 33.3s Simple tempered Gaussian (closed form) | 126 2 128 42.8s TemperedSampler | 32 32 22.2s MultiSampler without swapping | 32 32 5.5s MultiSampler with swapping (saveall=true) | 31 1 32 10.5s chain 1 | 2 2 0.0s chain 2 | 2 2 0.0s chain 3 | 1 1 2 5.3s chain 4 | 2 2 0.0s chain 5 | 2 2 0.0s chain 6 | 2 2 0.0s chain 7 | 2 2 0.0s chain 8 | 2 2 0.0s chain 9 | 2 2 0.0s chain 10 | 2 2 0.0s chain 11 | 2 2 0.0s MultiSampler with swapping (saveall=true) | 31 1 32 3.7s chain 1 | 2 2 0.0s chain 2 | 2 2 0.0s chain 3 | 1 1 2 0.1s chain 4 | 2 2 0.0s chain 5 | 2 2 0.0s chain 6 | 2 2 0.0s chain 7 | 2 2 0.0s chain 8 | 2 2 0.0s chain 9 | 2 2 0.0s chain 10 | 2 2 0.0s chain 11 | 2 2 0.0s RNG of the outermost testset: Random.Xoshiro(0x0597eb9e3be38c16, 0x1097a563e7f8cbba, 0xfc6514f86ba24aa4, 0x7d0d3feaa5bab4c7, 0x90b5040e961455e9) ERROR: LoadError: Some tests did not pass: 1519 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MCMCTempering/movdr/test/runtests.jl:186 Testing failed after 336.39s ERROR: LoadError: Package MCMCTempering errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1071.33s: package has test failures