Package evaluation to test DataManifest on Julia 1.14.0-DEV.1720 (f38c537ec6*) started at 2026-02-15T14:43:52.842 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.66s ################################################################################ # Installation # Installing DataManifest... Resolving package versions... Installed DataManifest ─ v0.12.2 Updating `~/.julia/environments/v1.14/Project.toml` [b8ee69ef] + DataManifest v0.12.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [b8ee69ef] + DataManifest v0.12.2 [5c2747f8] + URIs v1.6.1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [458c3c95] + OpenSSL_jll v3.5.5+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.68.0+1 Installation completed after 1.51s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 3199.5 ms ✓ CommonDataModel 1824.7 ms ✓ DataManifest 1797.2 ms ✓ DimensionalData → DimensionalDataCategoricalArraysExt 1986.8 ms ✓ DimensionalData → DimensionalDataDiskArraysExt 4591.4 ms ✓ Parquet 1442.3 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 15185.7 ms ✓ NCDatasets 7 dependencies successfully precompiled in 31 seconds. 120 already precompiled. Precompilation completed after 57.73s ################################################################################ # Testing # Testing DataManifest Status `/tmp/jl_sZU78i/Project.toml` [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [a93c6f00] DataFrames v1.8.1 [b8ee69ef] DataManifest v0.12.2 [0703355e] DimensionalData v0.29.26 [682c06a0] JSON v1.4.0 [85f8d34a] NCDatasets v0.14.11 [bac558e1] OrderedCollections v1.8.1 [626c502c] Parquet v0.8.6 [5c2747f8] URIs v1.6.1 [ddb6d928] YAML v0.4.16 [a5390f91] ZipFile v0.10.1 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [56ddb016] Logging v1.11.0 [ea8e919c] SHA v1.0.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_sZU78i/Manifest.toml` [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.5 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.2 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [1fbeeb36] CommonDataModel v0.4.2 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [b8ee69ef] DataManifest v0.12.2 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [abce61dc] Decimals v0.4.1 [0703355e] DimensionalData v0.29.26 [3c3547ce] DiskArrays v0.4.19 [411431e0] Extents v0.1.6 [48062228] FilePathsBase v0.9.24 [842dd82b] InlineStrings v1.4.5 [85a1e053] Interfaces v0.3.2 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [1724a1d5] LittleEndianBase128 v0.3.0 [3da0fdf6] MPIPreferences v0.1.11 [e1d29d7a] Missings v1.2.0 [85f8d34a] NCDatasets v0.14.11 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [626c502c] Parquet v0.8.6 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.2.3 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.9 [59d4ed8c] Snappy v0.4.3 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.3 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8d9c9c80] Thrift v0.8.5 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.16 [a5390f91] ZipFile v0.10.1 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 ⌅ [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [815b9798] ThriftJuliaCompiler_jll v0.12.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.5+0 [337d8026] libzip_jll v1.11.3+0 [fe1e1685] snappy_jll v1.2.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ DataManifest Downloading dataset: to /tmp/DataManifest_test_2943lH/cmd-test/templating [ DataManifest Downloading dataset: to /tmp/DataManifest_test_2943lH/julia-cmd-test/result [ DataManifest Downloading dataset: https://example.com/supplement.csv to /tmp/DataManifest_test_2943lH/julia-vars/out [ DataManifest Downloading dataset: to /tmp/DataManifest_test_2943lH/julia-modules-test/out [ DataManifest Downloading dataset: to /tmp/DataManifest_test_2943lH/julia-includes-test/out [ DataManifest Dataset already exists at: /tmp/DataManifest_test_2943lH/julia-includes-test/out [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_2943lH/test-data/data_file.txt [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_2943lH/test-data/data_file.txt load_dataset: Error During Test at /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/runtests.jl:150 Got exception outside of a @test IOError: could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_2943lH/test-data/`: no such file or directory (ENOENT) Stacktrace: [1] _spawn_primitive(file::String, cmd::Cmd, stdio::Memory{Union{RawFD, Base.IOServer, Base.SyncCloseFD, IO}}) @ Base ./process.jl:148 [2] _spawn @ ./process.jl:165 [inlined] [3] #_spawn##0 @ ./process.jl:157 [inlined] [4] setup_stdios(f::Base.var"#_spawn##0#_spawn##1"{Cmd}, stdios::Vector{Union{RawFD, Base.FileRedirect, Base.IOServer, IO}}) @ Base ./process.jl:244 [5] _spawn @ ./process.jl:156 [inlined] [6] run(::Cmd; wait::Bool) @ Base ./process.jl:524 [7] run @ ./process.jl:522 [inlined] [8] _download_dataset(dataset::DatasetEntry, download_path::String; project_root::String, overwrite::Bool, required_paths_by_ref::Dict{String, String}, required_paths_ordered::Vector{String}, loaders_julia_modules::Vector{String}) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:257 [9] _download_dataset @ ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:200 [inlined] [10] download_dataset(db::Database, dataset::DatasetEntry; extract::Nothing, overwrite::Bool, kwargs::@Kwargs{}) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:321 [11] download_dataset @ ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:279 [inlined] [12] #load_dataset#18 @ ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:406 [inlined] [13] kwcall(::@NamedTuple{loader::var"#10#11"}, ::typeof(load_dataset), db::Database, entry::DatasetEntry) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:405 [14] load_dataset(db::Database, name::String; loader::Function, kwargs::@Kwargs{}) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:402 [15] kwcall(::@NamedTuple{loader::var"#10#11"}, ::typeof(load_dataset), db::Database, name::String) @ DataManifest.PipeLines ~/.julia/packages/DataManifest/hiu3W/src/PipeLines.jl:400 [16] top-level scope @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:22 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [18] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:151 [inlined] [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [20] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:156 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [25] _start() @ Base ./client.jl:585 [ DataManifest Downloading dataset: https://download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv to /tmp/DataManifest_test_2943lH/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv [ DataManifest Downloading dataset: https://doi.pangaea.de/10.1594/PANGAEA.930512?format=zip to /tmp/DataManifest_test_2943lH/doi.pangaea.de/10.1594/PANGAEA.930512 [ DataManifest Dataset already exists at: /tmp/DataManifest_test_2943lH/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_2943lH/test-data/data_file.txt [ Info: Skipping download_datasets test (offline or error): Base.IOError("could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_2943lH/test-data/`: no such file or directory (ENOENT)", -2) [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_2943lH/test-data/data_file.txt delete_dataset: Test Failed at /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/runtests.jl:282 Expression: isfile(path) Evaluated: isfile("/tmp/DataManifest_test_2943lH/test-data/data_file.txt") Stacktrace: [1] top-level scope @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:22 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [3] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:273 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [5] macro expansion @ ~/.julia/packages/DataManifest/hiu3W/test/runtests.jl:282 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_2943lH/test-data/data_file.txt [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_2943lH/test-data/data_file.txt [ Info: Skipping requires test (offline or error): Base.IOError("could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_2943lH/test-data/`: no such file or directory (ENOENT)", -2) [ DataManifest Downloading dataset: file:///home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt to /tmp/DataManifest_test_2943lH/test-data/data_file.txt [ Info: Skipping path template test: Base.IOError("could not spawn `rsync -arvzL /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/test-data/data_file.txt /tmp/DataManifest_test_2943lH/test-data/`: no such file or directory (ENOENT)", -2) [ DataManifest Dataset already exists at: /tmp/DataManifest_test_2943lH/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv [ DataManifest Downloading dataset: https://download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv to /tmp/DataManifest_test_2943lH/download.pangaea.de/dataset/962852/files/LGM_foraminifera_assemblages_20240110.csv Test Summary: | Pass Fail Error Total Time DataManifest.jl | 86 1 1 88 3m05.4s Registration | 4 4 0.2s DatasetEntry access | 5 5 0.6s Database string/repr | 2 2 0.2s Path | 3 3 0.4s File format inference | 6 6 0.4s TOML | 3 3 2.2s Command-based entry (templating) | 2 2 4.5s julia (inline Julia in isolated module) | 2 2 0.0s julia: uri, key, doi etc. in scope (same as shell template) | 4 4 0.6s julia: [_LOADERS].julia_modules applied to dataset julia code | 2 2 0.2s julia: [_LOADERS].julia_includes applied to loader context | 2 2 1.2s load_dataset | 1 1 2.9s Download (optional, may skip if offline) | 1 1 5.0s delete_dataset | 4 1 5 4.8s requires (dependency resolution) | 1 1 0.5s download_dataset overwrite | 1 1 0.2s DefaultLoaders | 41 41 2m31.8s validate_loaders | 3 3 1.3s RNG of the outermost testset: Random.Xoshiro(0xe8dd38b475eaec07, 0x1b14c65a7f91cc21, 0x230863f389010b8c, 0x9736f96fedc2258a, 0x0bc6519521f490ec) ERROR: LoadError: Some tests did not pass: 86 passed, 1 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/DataManifest/hiu3W/test/runtests.jl:20 Testing failed after 204.01s ERROR: LoadError: Package DataManifest errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 295.83s: package tests unexpectedly errored