Package evaluation to test sparseQFCA on Julia 1.14.0-DEV.1711 (41ad7d9eeb*) started at 2026-02-12T23:54:18.395 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 12.72s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed HiGHS_jll ───────────── v1.13.1+0 Installed MacroTools ──────────── v0.5.16 Installed DiffResults ─────────── v1.1.0 Installed ForwardDiff ─────────── v1.3.2 Installed SnoopPrecompile ─────── v1.0.3 Installed DataStructures ──────── v0.18.22 Installed JLD2 ────────────────── v0.5.15 Installed Bzip2_jll ───────────── v1.0.9+0 Installed SBML ────────────────── v1.6.0 Installed HiGHS ───────────────── v1.21.1 Installed libaec_jll ──────────── v1.1.5+0 Installed ConstructionBase ────── v1.6.0 Installed DelimitedFiles ──────── v1.9.1 Installed oneTBB_jll ──────────── v2022.0.0+1 Installed MPICH_jll ───────────── v4.3.2+0 Installed MKL_jll ─────────────── v2024.2.0+0 Installed Cgl_jll ─────────────── v0.6000.900+0 Installed Cbc_jll ─────────────── v200.1000.1200+0 Installed HSL_jll ─────────────── v4.0.4+0 Installed Clp ─────────────────── v1.3.0 Installed CodecZlib ───────────── v0.7.8 Installed ExprTools ───────────── v0.1.10 Installed SBMLFBCModels ───────── v1.1.1 Installed OrderedCollections ──── v1.8.1 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed TranscodingStreams ──── v0.11.3 Installed HashArrayMappedTries ── v0.2.0 Installed Compat ──────────────── v4.18.1 Installed Statistics ──────────── v1.11.1 Installed PrecompileTools ─────── v1.3.3 Installed Clp_jll ─────────────── v100.1700.1000+1 Installed CDDLib ──────────────── v0.10.2 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed MUMPS_seq_jll ───────── v500.800.100+0 Installed IntelOpenMP_jll ─────── v2024.2.1+0 Installed CoinUtils_jll ───────── v200.1100.1200+0 Installed ConstraintTrees ─────── v1.11.0 Installed Clarabel ────────────── v0.10.0 Installed TimerOutputs ────────── v0.5.29 Installed CEnum ───────────────── v0.5.0 Installed Colors ──────────────── v0.13.1 Installed CommonSubexpressions ── v0.3.1 Installed ASL_jll ─────────────── v0.1.3+0 Installed FileIO ──────────────── v1.18.0 Installed IrrationalConstants ─── v0.2.6 Installed StaticArrays ────────── v1.9.16 Installed StaticArraysCore ────── v1.4.4 Installed JuMP ────────────────── v1.29.4 Installed NaNMath ─────────────── v1.1.3 Installed Requires ────────────── v1.3.1 Installed ColorTypes ──────────── v0.12.1 Installed CodecBzip2 ──────────── v0.8.5 Installed QDLDL ───────────────── v0.4.1 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed AbstractFBCModels ───── v1.3.0 Installed GenericLinearAlgebra ── v0.3.19 Installed LogExpFunctions ─────── v0.3.29 Installed StableRNGs ──────────── v1.0.4 Installed SCS ─────────────────── v2.6.2 Installed AMD ─────────────────── v0.5.3 Installed HDF5_jll ────────────── v1.14.6+0 Installed OpenBLAS32_jll ──────── v0.3.30+0 Installed Pardiso ─────────────── v0.5.7 Installed DiffRules ───────────── v1.15.1 Installed SBML_jll ────────────── v5.21.0+0 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed Cbc ─────────────────── v1.3.0 Installed JSON ────────────────── v0.21.4 Installed Hwloc_jll ───────────── v2.12.2+0 Installed Parsers ─────────────── v2.8.3 Installed ScopedValues ────────── v1.5.0 Installed ECOS_jll ────────────── v200.0.800+0 Installed IfElse ──────────────── v0.1.1 Installed ECOS ────────────────── v1.1.3 Installed Unitful ─────────────── v1.28.0 Installed GLPK_jll ────────────── v5.0.1+1 Installed XML2_jll ────────────── v2.13.9+0 Installed COBREXA ─────────────── v2.9.1 Installed PikaParser ──────────── v0.6.1 Installed SpecialFunctions ────── v2.7.1 Installed Reexport ────────────── v1.2.2 Installed MPIPreferences ──────── v0.1.11 Installed FixedPointNumbers ───── v0.8.5 Installed MathOptIIS ──────────── v0.1.1 Installed MutableArithmetics ──── v1.6.7 Installed Preferences ─────────── v1.5.1 Installed JSONFBCModels ───────── v1.0.1 Installed Libiconv_jll ────────── v1.18.0+0 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed BenchmarkTools ──────── v1.6.3 Installed JLLWrappers ─────────── v1.7.1 Installed cddlib_jll ──────────── v0.94.14+0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed Polyhedra ───────────── v0.8.1 Installed METIS_jll ───────────── v5.1.2+1 Installed GLPK ────────────────── v1.2.1 Installed SCS_jll ─────────────── v300.200.1100+0 Installed DocStringExtensions ─── v0.9.5 Installed Osi_jll ─────────────── v0.10800.1100+0 Installed HSL ─────────────────── v0.4.3 Installed HDF5 ────────────────── v0.17.2 Installed MathOptInterface ────── v1.49.0 Installed sparseQFCA ──────────── v2.3.0 Installing 26 artifacts Installed artifact ASL 276.3 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact cddlib 1.0 MiB Installed artifact CoinUtils 811.6 KiB Installed artifact MPICH 3.3 MiB Installed artifact SCS 543.6 KiB Installed artifact HiGHS 2.4 MiB Installed artifact libaec 49.6 KiB Installed artifact HDF5 5.7 MiB Installed artifact ECOS 75.2 KiB Installed artifact METIS 1.1 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Cgl 656.0 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Cbc 1.1 MiB Installed artifact Clp 1.4 MiB Installed artifact XML2 2.5 MiB Installed artifact Osi 443.6 KiB Installed artifact SBML 6.0 MiB Installed artifact Bzip2 503.5 KiB Installed artifact GLPK 3.1 MiB Installed artifact Hwloc 3.5 MiB Installed artifact HSL 1.1 MiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact MUMPS_seq 8.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 [9961bab8] + Cbc v1.3.0 ⌅ [61c947e1] + Clarabel v0.10.0 [e2554f3b] + Clp v1.3.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.18.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.2 [60bf3e95] + GLPK v1.2.1 [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.2 ⌅ [34c5aeac] + HSL v0.4.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.21.1 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.29.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.49.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌅ [46dd5b70] + Pardiso v0.5.7 [69de0a69] + Parsers v2.8.3 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.2 [7e506255] + ScopedValues v1.5.0 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.7.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [38041ee0] + Cbc_jll v200.1000.1200+0 [3830e938] + Cgl_jll v0.6000.900+0 ⌅ [06985876] + Clp_jll v100.1700.1000+1 [be027038] + CoinUtils_jll v200.1100.1200+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [017b0a0e] + HSL_jll v4.0.4+0 [8fd58aa0] + HiGHS_jll v1.13.1+0 [e33a78d0] + Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [d00139f3] + METIS_jll v5.1.2+1 ⌅ [856f044c] + MKL_jll v2024.2.0+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [7da25872] + Osi_jll v0.10800.1100+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Pardiso → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4b618484bf94a52f02595cd73ac8a6417f4c0c70/build.log` Installation completed after 22.34s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4839.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4590.0 ms ✓ MacroTools 872.9 ms ✓ Reexport 1164.2 ms ✓ Statistics 1187.3 ms ✓ ConstructionBase 2265.7 ms ✓ IrrationalConstants 1027.1 ms ✓ StaticArraysCore 1224.3 ms ✓ Requires 1260.0 ms ✓ OrderedCollections 954.8 ms ✓ StableRNGs 945.4 ms ✓ HashArrayMappedTries 1137.3 ms ✓ DocStringExtensions 908.1 ms ✓ CEnum 929.8 ms ✓ ExprTools 860.0 ms ✓ IfElse 1280.7 ms ✓ TranscodingStreams 1630.5 ms ✓ AMD 1612.5 ms ✓ GenericLinearAlgebra 1143.0 ms ✓ NaNMath 1053.5 ms ✓ DelimitedFiles 35708.7 ms ✓ Unitful 1352.2 ms ✓ Compat 1203.3 ms ✓ Preferences 12265.6 ms ✓ MutableArithmetics 1852.0 ms ✓ CommonSubexpressions 4214.2 ms ✓ FixedPointNumbers 1379.7 ms ✓ Statistics → SparseArraysExt 824.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 899.5 ms ✓ DiffResults 9252.4 ms ✓ FileIO 915.8 ms ✓ ScopedValues 4030.2 ms ✓ AbstractFBCModels 1388.7 ms ✓ LogExpFunctions 1518.1 ms ✓ PikaParser 3587.8 ms ✓ TimerOutputs 999.0 ms ✓ CodecZlib 1420.9 ms ✓ QDLDL 2339.7 ms ✓ Unitful → PrintfExt 2030.2 ms ✓ Unitful → ConstructionBaseUnitfulExt 1958.9 ms ✓ Unitful → NaNMathExt 851.0 ms ✓ Compat → CompatLinearAlgebraExt 1209.4 ms ✓ JLLWrappers 1129.0 ms ✓ SnoopPrecompile 1473.2 ms ✓ MPIPreferences 934.8 ms ✓ PrecompileTools 2739.8 ms ✓ ColorTypes 3755.6 ms ✓ DataStructures 1453.0 ms ✓ METIS_jll 1544.9 ms ✓ libaec_jll 4737.9 ms ✓ IntelOpenMP_jll 1428.7 ms ✓ OpenBLAS32_jll 1435.5 ms ✓ Xorg_libpciaccess_jll 1434.2 ms ✓ Bzip2_jll 1435.8 ms ✓ LLVMOpenMP_jll 1452.4 ms ✓ GLPK_jll 1443.0 ms ✓ Libiconv_jll 1501.4 ms ✓ HiGHS_jll 4851.7 ms ✓ oneTBB_jll 1451.2 ms ✓ ECOS_jll 1473.8 ms ✓ cddlib_jll 1471.0 ms ✓ HSL_jll 1441.2 ms ✓ ASL_jll 1183.7 ms ✓ MicrosoftMPI_jll 1473.9 ms ✓ OpenSpecFun_jll 1521.8 ms ✓ CoinUtils_jll 4948.6 ms ✓ MPItrampoline_jll 13822.2 ms ✓ StaticArrays 16836.3 ms ✓ Parsers 46880.7 ms ✓ JLD2 1279.2 ms ✓ ColorTypes → StyledStringsExt 8136.4 ms ✓ Colors 3395.8 ms ✓ ConstraintTrees 1487.6 ms ✓ MUMPS_seq_jll 1028.0 ms ✓ CodecBzip2 1434.3 ms ✓ SCS_jll 1467.4 ms ✓ XML2_jll  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 8095.8 ms ✓ MKL_jll 9805.9 ms ✓ HSL 5193.8 ms ✓ SpecialFunctions 1454.2 ms ✓ Osi_jll 1434.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1414.5 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 3836.8 ms ✓ JSON 1557.9 ms ✓ SBML_jll 1454.4 ms ✓ Hwloc_jll  Downloading artifact: MKL ERROR: LoadError: TypeError: in ccall library name, expected Symbol, got a value of type Expr Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:198  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3288  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3130  [9] include_string  @ ./loading.jl:3140 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:3 in expression starting at stdin:5 ✗ Pardiso 1312.3 ms ✓ DiffRules 1274.9 ms ✓ Clp_jll 2779.9 ms ✓ BenchmarkTools 6652.6 ms ✓ JSONFBCModels 17707.4 ms ✓ SBML 4482.4 ms ✓ MPICH_jll 4331.8 ms ✓ OpenMPI_jll 6267.4 ms ✓ ForwardDiff 1468.9 ms ✓ Cgl_jll 4402.7 ms ✓ SBMLFBCModels 5452.5 ms ✓ HDF5_jll 1669.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2140.0 ms ✓ Unitful → ForwardDiffExt 71947.1 ms ✓ MathOptInterface 1439.7 ms ✓ Cbc_jll 13778.0 ms ✓ HDF5 5266.0 ms ✓ MathOptIIS 48160.1 ms ✓ SCS 56361.7 ms ✓ JuMP 11073.5 ms ✓ Polyhedra 8413.4 ms ✓ GLPK 7865.1 ms ✓ ECOS 134650.7 ms ✓ Clarabel 29996.0 ms ✓ Clp 7969.7 ms ✓ Cbc 29698.8 ms ✓ HiGHS 16993.2 ms ✓ COBREXA 10720.2 ms ✓ Polyhedra → PolyhedraJuMPExt 7322.2 ms ✓ CDDLib 49165.7 ms ✓ sparseQFCA 114 dependencies successfully precompiled in 887 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 914.26s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_fL9wpi/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.2 [87dc4568] HiGHS v1.21.1 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [b8f27783] MathOptInterface v1.49.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.2 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_fL9wpi/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.18.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.2 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.2 ⌅ [34c5aeac] HSL v0.4.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.21.1 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.49.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌅ [46dd5b70] Pardiso v0.5.7 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.2 [7e506255] ScopedValues v1.5.0 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.7.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [38041ee0] Cbc_jll v200.1000.1200+0 [3830e938] Cgl_jll v0.6000.900+0 ⌅ [06985876] Clp_jll v100.1700.1000+1 [be027038] CoinUtils_jll v200.1100.1200+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [017b0a0e] HSL_jll v4.0.4+0 [8fd58aa0] HiGHS_jll v1.13.1+0 [e33a78d0] Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [d00139f3] METIS_jll v5.1.2+1 ⌅ [856f044c] MKL_jll v2024.2.0+0 ⌅ [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.100+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [7da25872] Osi_jll v0.10800.1100+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [477f73a3] libaec_jll v1.1.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 From worker 7: terminate called after throwing an instance of 'std::system_error' From worker 7: what(): Resource temporarily unavailable From worker 7: From worker 7: [673] signal 6 (-6): Aborted From worker 7: in expression starting at none:0 From worker 7: unknown function (ip: 0x71bb20933ebc) at /lib/x86_64-linux-gnu/libc.so.6 From worker 7: gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 7: abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 7: __verbose_terminate_handler at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/vterminate.cc:95 From worker 7: __terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48 From worker 7: terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58 From worker 7: __cxa_throw at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98 From worker 7: __throw_system_error at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/system_error.cc:595 From worker 7: _M_start_thread at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/thread.cc:176 From worker 7: _ZN17HighsTaskExecutor10initializeEi.part.686 at /home/pkgeval/.julia/artifacts/57846bf52e8d91e2d6dfef3b0e474315208dc524/lib/libhighs.so (unknown line) From worker 7: _ZN5Highs19calledOptimizeModelEv at /home/pkgeval/.julia/artifacts/57846bf52e8d91e2d6dfef3b0e474315208dc524/lib/libhighs.so (unknown line) From worker 7: _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/57846bf52e8d91e2d6dfef3b0e474315208dc524/lib/libhighs.so (unknown line) From worker 7: _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/57846bf52e8d91e2d6dfef3b0e474315208dc524/lib/libhighs.so (unknown line) From worker 7: Highs_run at /home/pkgeval/.julia/packages/HiGHS/lBNEK/src/gen/libhighs.jl:328 [inlined] From worker 7: _Highs_run_workaround_issue_316 at /home/pkgeval/.julia/packages/HiGHS/lBNEK/src/MOI_wrapper.jl:2229 [inlined] From worker 7: #47 at /home/pkgeval/.julia/packages/HiGHS/lBNEK/src/MOI_wrapper.jl:2276 [inlined] From worker 7: disable_sigint at ./c.jl:167 From worker 7: optimize! at /home/pkgeval/.julia/packages/HiGHS/lBNEK/src/MOI_wrapper.jl:2276 From worker 7: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Bridges/bridge_optimizer.jl:367 [inlined] From worker 7: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/MathOptInterface.jl:122 [inlined] From worker 7: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Utilities/cachingoptimizer.jl:370 From worker 7: unknown function (ip: 0x71bad3594db2) at (unknown file) From worker 7: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 7: ijl_apply_generic at /source/src/gf.c:4317 From worker 7: #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:609 From worker 7: optimize! at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:560 From worker 7: unknown function (ip: 0x71bad35756f2) at (unknown file) From worker 7: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 7: ijl_apply_generic at /source/src/gf.c:4317 From worker 7: macro expansion at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:676 [inlined] From worker 7: #distributedReversibility_Correction##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:306 From worker 7: #pfor##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:86 From worker 7: unknown function (ip: 0x71bad353347a) at (unknown file) From worker 7: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 7: ijl_apply_generic at /source/src/gf.c:4317 From worker 7: jl_apply at /source/src/julia.h:2285 [inlined] From worker 7: jl_f_invokelatest at /source/src/builtins.c:889 From worker 7: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 7: ijl_apply_generic at /source/src/gf.c:4317 From worker 7: jl_apply at /source/src/julia.h:2285 [inlined] From worker 7: jl_f__apply_iterate at /source/src/builtins.c:876 From worker 7: #handle_msg##0 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:283 From worker 7: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70 From worker 7: unknown function (ip: 0x71bad350650b) at (unknown file) From worker 7: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 7: ijl_apply_generic at /source/src/gf.c:4317 From worker 7: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:79 From worker 7: #schedule_call##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:88 From worker 7: unknown function (ip: 0x71bad3505e2f) at (unknown file) From worker 7: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 7: ijl_apply_generic at /source/src/gf.c:4317 From worker 7: jl_apply at /source/src/julia.h:2285 [inlined] From worker 7: start_task at /source/src/task.c:1275 From worker 7: Allocations: 28195225 (Pool: 28194646; Big: 579); GC: 14 Worker 7 terminated. UNHANDLED TASK ERROR: EOFError: read end of file Stacktrace: [1] (::Base.var"#wait_locked#unsafe_read##0")(s::Sockets.TCPSocket, buf::IOBuffer, nb::Int64) @ Base ./stream.jl:976 [2] unsafe_read(s::Sockets.TCPSocket, p::Ptr{UInt8}, nb::UInt64) @ Base ./stream.jl:984 [3] unsafe_read @ ./io.jl:908 [inlined] [4] unsafe_read(s::Sockets.TCPSocket, p::Base.RefValue{NTuple{4, Int64}}, n::Int64) @ Base ./io.jl:907 [5] read! @ ./io.jl:912 [inlined] [6] deserialize_hdr_raw @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/messages.jl:167 [inlined] [7] message_handler_loop(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:172 [8] process_tcp_streams(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:133 [9] (::Distributed.var"#process_messages##0#process_messages##1"{Sockets.TCPSocket, Sockets.TCPSocket, Bool})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:121 UNHANDLED TASK ERROR: ProcessExitedException(7) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 ERROR: LoadError: TaskFailedException nested task error: ProcessExitedException(7) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}, SolverName::String, OctuplePrecision::Bool, printLevel::Int64) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:663 [4] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:594 [5] top-level scope @ ~/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [10] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 ┌ Warning: Forcibly interrupting busy workers │ exception = rmprocs: pids [2, 3, 4, 5, 6, 8] not terminated after 5.0 seconds. └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1269 ┌ Warning: rmprocs: process 1 not removed └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1065 Testing failed after 1158.37s ERROR: LoadError: Package sparseQFCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2130.59s: package tests unexpectedly errored