Package evaluation to test OnlinePCA on Julia 1.14.0-DEV.1711 (41ad7d9eeb*) started at 2026-02-12T23:26:33.641 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.42s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed PlotlyJS ─ v0.18.17 Installed WebIO ──── v0.8.21 Updating `~/.julia/environments/v1.14/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.3 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.19 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.5+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/287e092914da6c91f002aafcf82a2ec065bf94a3/build.log` Installation completed after 31.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 21688.2 ms ✓ PlotlyJS → DataFramesExt 19737.3 ms ✓ OnlinePCA 2 dependencies successfully precompiled in 68 seconds. 162 already precompiled. Precompilation completed after 73.91s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_VJWYeU/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.123 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_VJWYeU/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.1 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.123 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.3 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.19 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.7.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.10 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.5+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.14.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.18.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.2+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.12.2 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.30+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.68.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_VJWYeU/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [1a297f60] FillArrays v1.16.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_VJWYeU/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.3 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.19 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.17 [f2990250] PlotlyKaleido v2.3.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.5+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... /tmp/jl_6hw0Ie Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: binfile => /tmp/jl_6hw0Ie/Data.zst csvfile => /tmp/jl_6hw0Ie/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 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Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_6hw0Ie/Data.zst outdir => /tmp/jl_wJ9H9i pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_6hw0Ie/Data.mtx.zst outdir => /tmp/jl_8LjmZz pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowvarlist => /tmp/jl_wJ9H9i/Feature_Vars.csv binfile => /tmp/jl_6hw0Ie/Data.zst outdir => /tmp/jl_wJ9H9i rowcv2list => /tmp/jl_wJ9H9i/Feature_CV2s.csv rowmeanlist => /tmp/jl_wJ9H9i/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_6hw0Ie/Data.zst samplelist => /tmp/jl_wJ9H9i/Sample_NoCounts.csv outdir => /tmp/jl_wJ9H9i thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_wJ9H9i/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_6hw0Ie/Data.zst samplelist => outdir => /tmp/jl_wJ9H9i thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_wJ9H9i/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_6hw0Ie/Data.zst samplelist => /tmp/jl_wJ9H9i/Sample_NoCounts.csv outdir => /tmp/jl_wJ9H9i thr2 => 10 direct1 => + direct2 => + featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => "/tmp/jl_wJ9H9i/Eigen_vectors.csv" scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => "/tmp/jl_wJ9H9i/Loadings.csv" Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:43 Progress: 1%|▍ | ETA: 0:03:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:43 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:01:33 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### Oja (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:38 Progress: 1%|▌ | ETA: 0:03:56 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:38 Progress: 1%|▍ | ETA: 0:03:19 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:31 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:54 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:03 Progress: 1%|▍ | ETA: 0:05:42 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:51 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:19 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:29 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:03 Progress: 1%|▍ | ETA: 0:02:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing lower => 0 stepsize => "1.0e-15" dim => "3" rowvarlist => "" offsetStoch => 1.0f-15 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" upper => 1.0f38 numepoch => "1" initV => nothing Progress: 1%|▎ | ETA: 0:08:21 Progress: 1%|▍ | ETA: 0:06:33 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:14:30 Progress: 1%|▍ | ETA: 0:11:27 Progress: 34%|██████████████▏ | ETA: 0:00:15 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Progress: 1%|▎ | ETA: 0:03:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:47 Progress: 1%|▍ | ETA: 0:10:12 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:14:16 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:14:28 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:15:31 Progress: 34%|█████████████▊ | ETA: 0:00:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:04:55 Progress: 1%|▍ | ETA: 0:05:43 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:37 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:09:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### SVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:17:17 Progress: 1%|▍ | ETA: 0:13:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:08 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:17:28 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:18:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:18:29 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 ####### RSVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:04:36 Progress: 1%|▍ | ETA: 0:05:31 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:09:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### RSVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:22:09 Progress: 1%|▍ | ETA: 0:16:42 Progress: 34%|█████████████▊ | ETA: 0:00:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:21:14 Progress: 34%|█████████████▊ | ETA: 0:00:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:22:56 Progress: 34%|█████████████▊ | ETA: 0:00:20 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:23:47 Progress: 34%|█████████████▊ | ETA: 0:00:20 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 ####### Orthogonal Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:06:26 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Orthogonal Iteration (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing lower => 0 dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" upper => 1.0f38 numepoch => "3" initV => nothing Progress: 0%|▏ | ETA: 0:23:47 Progress: 33%|█████████████▊ | ETA: 0:00:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### Randomized Block Krylov Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:00:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Q' A Q' A' A svd(Q' A' A) Q*U ####### Randomized Block Krylov Iteration (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing lower => 0 dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" upper => 1.0f38 numepoch => "3" initV => nothing Progress: 0%|▏ | ETA: 0:20:30 Progress: 33%|█████████████▊ | ETA: 0:00:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Q' A Q' A' A svd(Q' A' A) Q*U ####### ARNOLDI (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### ARNOLDI (Command line) ####### Parsed args: scale => "ftt" dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" numepoch => "3" Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### LANCZOS (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### LANCZOS (Command line) ####### Parsed args: scale => "ftt" dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_6hw0Ie/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" numepoch => "3" Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### HALKO (Julia API) ####### Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:00:57 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### HALKO (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_6hw0Ie/Data.zst" noversamples => 5 niter => 3 perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" initV => nothing Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:05:51 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) Progress: 1%|▎ | ETA: 0:01:42 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### ALGORITHM971 (Julia API) ####### Random Projection : Y = A Ω LU factorization : L = lu(Y) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) QR factorization (3/3) : Q = qr(A lu(A' L)) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### ALGORITHM971 (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_6hw0Ie/Data.zst" noversamples => 5 niter => 3 perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" initV => nothing Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:05:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 LU factorization : L = lu(Y) Normalized power iterations (1/3) : A' L Progress: 1%|▎ | ETA: 0:01:41 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) QR factorization (3/3) : Q = qr(A lu(A' L)) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### SINGLEPASS (Julia API) ####### Random Projection : Y = A Ω, Ytilde = A' Ωtilde QR factorization : Q = qr(Y), Qtilde = qr(Ytilde) Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B SVD with small matrix : svd(B) ####### SINGLEPASS (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_6hw0Ie/Data.zst" noversamples => 5 niter => 3 perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" initV => nothing Random Projection : Y = A Ω, Ytilde = A' Ωtilde Progress: 1%|▎ | ETA: 0:02:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 QR factorization : Q = qr(Y), Qtilde = qr(Ytilde) Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B SVD with small matrix : svd(B) ####### SINGLEPASS2 (Julia API) ####### Random Projection : G = A Ω, H = A' A Ω Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) SVD with small matrix : svd(B) ####### SINGLEPASS2 (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_wJ9H9i" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_6hw0Ie/Data.zst" noversamples => 5 niter => 3 perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_wJ9H9i/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_wJ9H9i" initV => nothing Random Projection : G = A Ω, H = A' A Ω Progress: 1%|▎ | ETA: 0:02:26 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) SVD with small matrix : svd(B) ####### Sparse Randomized SVD (Julia API) ####### Initial Setting... Progress: 40%|████████████████▍ | ETA: 0:00:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Random Projection : Y = A Ω Progress: 40%|████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 LU factorization : L = lu(Y) ##### Iteration 1 / 3 ##### Normalized power iterations (1/3) : A' L Progress: 40%|████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Normalized power iterations (2/3) : A A' L LU decomposition (3/3) : L = lu(A A' L) ##### Iteration 2 / 3 ##### Normalized power iterations (1/3) : A' L Normalized power iterations (2/3) : A A' L LU decomposition (3/3) : L = lu(A A' L) ##### Iteration 3 / 3 ##### Normalized power iterations (1/3) : A' L Normalized power iterations (2/3) : A A' L QR decomposition (3/3) : Q = qr(A A' L) Small matrix computation : B = Q' A Progress: 40%|████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 SVD : B = U Σ V' ####### Sparse Randomized SVD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_8LjmZz" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_6hw0Ie/Data.mtx.zst" noversamples => 5 niter => 3 perm => false colsumlist => "" rowmeanlist => "/tmp/jl_8LjmZz/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_8LjmZz" chunksize => "51" initV => nothing Initial Setting... Progress: 40%|████████████████▍ | ETA: 0:00:05 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Random Projection : Y = A Ω Progress: 40%|████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 LU factorization : L = lu(Y) ##### Iteration 1 / 3 ##### Normalized power iterations (1/3) : A' L Progress: 40%|████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Normalized power iterations (2/3) : A A' L LU decomposition (3/3) : L = lu(A A' L) ##### Iteration 2 / 3 ##### Normalized power iterations (1/3) : A' L Normalized power iterations (2/3) : A A' L LU decomposition (3/3) : L = lu(A A' L) ##### Iteration 3 / 3 ##### Normalized power iterations (1/3) : A' L Normalized power iterations (2/3) : A A' L QR decomposition (3/3) : Q = qr(A A' L) Small matrix computation : B = Q' A Progress: 40%|████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 SVD : B = U Σ V' ####### Exact Out-of-Core PCA (Dense, Julia API) ####### # 1. Column-wise Mean # 2. Out-of-Core Covariance Matrix Calculation Progress: 2 Time: 0:00:00 Progress: 6 Time: 0:00:00 # 3. PC Score (Z = XV) is being calculated. # 4. Out-of-Core PC Score Calculation # 5. Delayed Centering Correction # 6. Normalize W and Calculate Eigenvalues ####### Exact Out-of-Core PCA (Dense, Command line) ####### Parsed args: scale => "raw" input => "/tmp/jl_6hw0Ie/Data.zst" outdir => "/tmp/jl_wJ9H9i" chunksize => "51" pseudocount => 1.0f0 mode => "dense" dim => "3" # 1. Column-wise Mean # 2. Out-of-Core Covariance Matrix Calculation Progress: 2 Time: 0:00:00 Progress: 6 Time: 0:00:00 # 3. PC Score (Z = XV) is being calculated. # 4. Out-of-Core PC Score Calculation # 5. Delayed Centering Correction # 6. Normalize W and Calculate Eigenvalues ####### Exact Out-of-Core PCA (MM-Sparse, Julia API) ####### # 1. Column-wise Mean # 2. Out-of-Core Covariance Matrix Calculation Progress: 2 Time: 0:00:02 Progress: 6 Time: 0:00:02 # 3. PC Score (Z = XV) is being calculated. # 4. Out-of-Core PC Score Calculation Progress: 2 Time: 0:00:00 Progress: 6 Time: 0:00:00 # 5. Delayed Centering Correction # 6. Normalize W and Calculate Eigenvalues ####### Exact Out-of-Core PCA (MM-Sparse, Command line) ####### Parsed args: scale => "raw" input => "/tmp/jl_6hw0Ie/Data.mtx.zst" outdir => "/tmp/jl_8LjmZz" chunksize => "51" pseudocount => 1.0f0 mode => "sparse_mm" dim => "3" # 1. Column-wise Mean # 2. Out-of-Core Covariance Matrix Calculation Progress: 2 Time: 0:00:01 Progress: 6 Time: 0:00:01 # 3. PC Score (Z = XV) is being calculated. # 4. Out-of-Core PC Score Calculation Progress: 2 Time: 0:00:00 Progress: 6 Time: 0:00:00 # 5. Delayed Centering Correction # 6. Normalize W and Calculate Eigenvalues ####### Exact Out-of-Core PCA (BinCOO-Sparse, Julia API) ####### # 1. Column-wise Mean # 2. Out-of-Core Covariance Matrix Calculation # 3. PC Score (Z = XV) is being calculated. # 4. Out-of-Core PC Score Calculation Progress: 2 Time: 0:00:01 Progress: 6 Time: 0:00:01 # 5. Delayed Centering Correction # 6. Normalize W and Calculate Eigenvalues ####### Exact Out-of-Core PCA (BinCOO-Sparse, Command line) ####### ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 541 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x7da47e68405b) at /lib/x86_64-linux-gnu/libc.so.6 unknown function (ip: 0x7da47e686e5c) at /lib/x86_64-linux-gnu/libc.so.6 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_op.cc:50 Parsed args: _ZNSt6vectorIPN4llvm12MachineInstrESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13LiveVariables10runOnInstrERNS_12MachineInstrERNS_15SmallVectorImplINS_8RegisterEEEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13LiveVariables10runOnBlockEPNS_17MachineBasicBlockEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13LiveVariables7analyzeERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm24LiveVariablesWrapperPass20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1635 addModule at /source/src/jitlayers.cpp:2143 jl_compile_codeinst_now at /source/src/jitlayers.cpp:688 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:882 jl_compile_method_internal at /source/src/gf.c:3652 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_fptr_interpret_call at /source/src/interpreter.c:802 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_fptr_interpret_call at /source/src/interpreter.c:802 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_fptr_interpret_call at /source/src/interpreter.c:802 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 jl_fptr_interpret_call at /source/src/interpreter.c:802 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_fptr_interpret_call at /source/src/interpreter.c:802 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_fptr_interpret_call at /source/src/interpreter.c:802 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_fptr_interpret_call at /source/src/interpreter.c:802 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_invoke at /source/src/gf.c:4127 parse_commandline at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/Utils.jl:231 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/exact_ooc_pca:9 unknown function (ip: 0x7da461708dff) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 scale => "raw" input => "/tmp/jl_6hw0Ie/Data.bincoo.zst" outdir => "/tmp/jl_8LjmZz" chunksize => "51" pseudocount => 1.0f0 mode => "sparse_bincoo" dim => "3" eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:309 exec_options at ./client.jl:344 _start at ./client.jl:585 jfptr__start_77651.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7da47e616249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 139 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_69420.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== # 1. Column-wise Mean # 2. Out-of-Core Covariance Matrix Calculation ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e210496e770 Total snapshots: 401. Utilization: 0% ╎401 @Base/task.jl:1168 wait_forever() 400╎ 401 @Base/task.jl:1246 wait() ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007da463ffc010 Total snapshots: 14. Utilization: 100% ╎14 @Base/client.jl:585 _start() ╎ 14 @Base/client.jl:344 exec_options(opts::Base.JLOptions) ╎ 14 @Base/Base.jl:309 include(mod::Module, _path::String) ╎ 14 @Base/loading.jl:3190 _include(mapexpr::Function, mod::Module, _path::… ╎ 14 @Base/loading.jl:3130 include_string(mapexpr::typeof(identity), mod::… ╎ 14 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 14 @OnlinePCA/…ct_ooc_pca:33 main() ╎ ╎ 14 @Compiler/…peinfer.jl:1724 typeinf_ext_toplevel(mi::Core.MethodIns… ╎ ╎ 14 @Compiler/…peinfer.jl:1715 typeinf_ext_toplevel ╎ ╎ 14 @Compiler/…einfer.jl:1532 typeinf_ext(interp::Compiler.NativeInt… ╎ ╎ 6 @Compiler/…tation.jl:4568 typeinf(interp::Compiler.NativeInterp… ╎ ╎ ╎ 6 @Compiler/…tation.jl:4376 typeinf_local(interp::Compiler.Nativ… ╎ ╎ ╎ 6 @Compiler/…ation.jl:3823 abstract_eval_basic_statement ╎ ╎ ╎ 6 @Compiler/…ation.jl:3866 abstract_eval_basic_statement ╎ ╎ ╎ 6 @Compiler/…tion.jl:3467 abstract_eval_statement_expr(interp… ╎ ╎ ╎ 6 @Compiler/…tion.jl:3103 abstract_eval_call ╎ ╎ ╎ ╎ 6 @Compiler/…tion.jl:3085 abstract_call(interp::Compiler.Na… ╎ ╎ ╎ ╎ 6 @Compiler/…ion.jl:2925 abstract_call ╎ ╎ ╎ ╎ 6 @Compiler/…ion.jl:2932 abstract_call(interp::Compiler.N… ╎ ╎ ╎ ╎ 6 @Compiler/…on.jl:2822 abstract_call_known(interp::Comp… ╎ ╎ ╎ ╎ 6 @Compiler/…on.jl:328 abstract_call_gf_by_type(interp:… ╎ ╎ ╎ ╎ ╎ 5 @Compiler/…on.jl:247 (::Compiler.var"#infercalls#abs… ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…on.jl:177 (::Compiler.var"#handle1#abstr… ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…n.jl:861 abstract_call_method_with_cons… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…n.jl:878 abstract_call_method_with_con… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1033 maybe_get_const_prop_profita… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1158 force_const_prop(interp::Co… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…n.jl:892 abstract_call_method_with_con… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:1343 const_prop_call(interp::Comp… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:4568 typeinf(interp::Compiler.Na… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…jl:4376 typeinf_local(interp::Compi… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…jl:3823 abstract_eval_basic_statem… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:3866 abstract_eval_basic_statem… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:3467 abstract_eval_statement_e… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:3103 abstract_eval_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:3085 abstract_call(interp::C… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:2925 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:2932 abstract_call(interp:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:2822 abstract_call_known(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:328 abstract_call_gf_by_… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:0 (::Compiler.var"#infe… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:247 (::Compiler.var"#in… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:177 (::Compiler.var"#h… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:861 abstract_call_met… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:892 abstract_call_me… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 2 @Compiler/…l:1343 const_prop_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 2 @Compiler/…l:4568 typeinf(interp:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 2 @Compiler/…l:4376 typeinf_local(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 2 @Compiler/…l:3823 abstract_eval_b… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 2 @Compiler/…l:3866 abstract_eval_b… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 2 @Compiler/…l:3467 abstract_eval_s… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 2 @Compiler/…l:3103 abstract_eval_c… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 2 @Compiler/…l:3085 abstract_call(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 2 @Compiler/…l:2925 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 2 @Compiler/…l:2932 abstract_call(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 2 @Compiler/…l:2822 abstract_call_k… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 2 @Compiler/…l:328 abstract_call_gf… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 2 @Compiler/…l:247 (::Compiler.var"… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 2 @Compiler/…l:177 (::Compiler.var"… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 2 @Compiler/…l:861 abstract_call_me… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 2 @Compiler/…l:892 abstract_call_me… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 2 @Compiler/…l:1343 const_prop_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 2 @Compiler/…l:4575 typeinf(interp:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 2 @Compiler/…l:278 finish_nocycle(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 2 @Compiler/…l:1021 optimize(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 2 @Compiler/…l:1048 run_passes_ipo_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 2 @Compiler/…l:1035 run_passes_ipo_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 1 @Compiler/…l:1332 slot2reg ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +24 1 @Compiler/…l:894 construct_ssa!(c… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +25 1 @Compiler/…l:467 domsort_ssa!(ir:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +26 1 @Base/…ay.jl:672 collect ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +27 1 @Base/…ay.jl:679 _collect(::Type{… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +28 1 @Base/…ay.jl:1345 push! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +29 1 @Base/…ay.jl:1348 _push! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +30 1 @Base/…ay.jl:1204 _growend! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 1 @Compiler/…l:1555 sroa_pass!(ir::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +24 1 @Compiler/…l:1886 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +25 1 @Compiler/…l:1964 iterate_compact… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +26 1 @Compiler/…l:1472 process_node!(c… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +27 1 @Compiler/…l:318 getindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +28 1 @Base/int.jl:560 <= ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…on.jl:226 (::Compiler.var"#handle1#abstr… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…e.jl:292 #tmerge##0 ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…s.jl:496 tmerge(lattice::Compiler.Infe… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:576 tmerge ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:679 tmerge(lattice::Compiler.Par… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:411 tmerge_fast_path ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:529 ⊑(lattice::Compiler.Partial… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:551 ⊑ 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:153 ⊑ 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…on.jl:256 (::Compiler.var"#infercalls#abs… ╎ ╎ 8 @Compiler/…tation.jl:4575 typeinf(interp::Compiler.NativeInterp… ╎ ╎ ╎ 7 @Compiler/…einfer.jl:278 finish_nocycle(interp::Compiler.Nativ… ╎ ╎ ╎ 7 @Compiler/…imize.jl:1021 optimize(interp::Compiler.NativeInte… ╎ ╎ ╎ 7 @Compiler/…imize.jl:1048 run_passes_ipo_safe ╎ ╎ ╎ 6 @Compiler/…mize.jl:1035 run_passes_ipo_safe(ci::Core.CodeIn… ╎ ╎ ╎ 1 @Compiler/…mize.jl:1332 slot2reg ╎ ╎ ╎ ╎ 1 @Compiler/…2ssa.jl:894 construct_ssa!(ci::Core.CodeInfo, … ╎ ╎ ╎ ╎ 1 @Compiler/…2ssa.jl:424 domsort_ssa!(ir::Compiler.IRCode,… ╎ ╎ ╎ ╎ 1 @Compiler/…/ir.jl:347 setindex! ╎ ╎ ╎ ╎ 1 @Compiler/…/ir.jl:336 setindex! ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:318 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:560 <= ╎ ╎ ╎ 2 @Compiler/…ning.jl:76 ssa_inlining_pass! ╎ ╎ ╎ ╎ 2 @Compiler/…ning.jl:1613 assemble_inline_todo!(ir::Compile… ╎ ╎ ╎ ╎ 2 @Compiler/…ing.jl:1366 handle_call! ╎ ╎ ╎ ╎ 2 @Compiler/…ing.jl:1334 compute_inlining_cases(info::Com… ╎ ╎ ╎ ╎ 2 @Compiler/…ng.jl:1270 handle_any_call_result! ╎ ╎ ╎ ╎ 2 @Compiler/…ng.jl:1281 handle_any_call_result!(cases::… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…ng.jl:1374 handle_call_result! ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…g.jl:1385 handle_call_result!(cases::Vec… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…g.jl:870 analyze_method! ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…g.jl:904 analyze_method!(call_result::… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:851 resolve_todo(mi::Core.MethodI… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:916 retrieve_ir_for_inlining ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/expr.jl:86 copy(c::Core.CodeInfo) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/expr.jl:79 copy_exprargs ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:704 _array_for ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:701 _array_for_inner ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:876 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:409 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:877 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:696 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:688 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:675 Array 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:615 GenericMemory ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/expr.jl:71 copy_exprs(x::Any) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/expr.jl:45 copy(e::Expr) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…pr.jl:79 copy_exprargs(x::Vector{An… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…pr.jl:70 copy_exprs(x::Any) ╎ ╎ ╎ 1 @Compiler/…sses.jl:2164 adce_pass!(ir::Compiler.IRCode, in… ╎ ╎ ╎ ╎ 1 @Compiler/…r/ir.jl:1886 iterate 1╎ ╎ ╎ ╎ 1 @Compiler/…/ir.jl:1892 iterate_compact(compact::Compiler… ╎ ╎ ╎ 1 @Compiler/…sses.jl:1325 sroa_pass!(ir::Compiler.IRCode, in… ╎ ╎ ╎ ╎ 1 @Compiler/…asses.jl:5 is_known_call(x::Any, func::Any, ir… ╎ ╎ ╎ ╎ 1 @Compiler/…mize.jl:482 argextype ╎ ╎ ╎ ╎ 1 @Compiler/…ize.jl:483 argextype ╎ ╎ ╎ ╎ 1 @Compiler/…ize.jl:518 argextype(x::Any, src::Compiler.… ╎ ╎ ╎ ╎ 1 @Compiler/…on.jl:3616 abstract_eval_globalref_type ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…on.jl:3747 abstract_load_all_consistent_l… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…n.jl:3732 scan_leaf_partitions ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…n.jl:3709 scan_specified_partitions(que… 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:3637 walk_binding_partition(import… ╎ ╎ ╎ 1 @Compiler/…sses.jl:1413 sroa_pass!(ir::Compiler.IRCode, in… ╎ ╎ ╎ ╎ 1 @Compiler/…asses.jl:5 is_known_call(x::Any, func::Any, ir… ╎ ╎ ╎ ╎ 1 @Compiler/…mize.jl:482 argextype ╎ ╎ ╎ ╎ 1 @Compiler/…ize.jl:483 argextype ╎ ╎ ╎ ╎ 1 @Compiler/…ize.jl:518 argextype(x::Any, src::Compiler.… ╎ ╎ ╎ ╎ 1 @Compiler/…on.jl:3616 abstract_eval_globalref_type 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…te.jl:254 WorldWithRange ╎ ╎ ╎ 1 @Compiler/…mize.jl:1070 run_passes_ipo_safe(ci::Core.CodeIn… 1╎ ╎ ╎ 1 @Compiler/…rify.jl:433 verify_ir(ir::Compiler.IRCode, prin… ╎ ╎ ╎ 1 @Compiler/…einfer.jl:285 finish_nocycle(interp::Compiler.Nativ… ╎ ╎ ╎ 1 @Compiler/…einfer.jl:153 finish!(interp::Compiler.NativeInter… ╎ ╎ ╎ 1 @Compiler/…imize.jl:298 ir_to_codeinf! ╎ ╎ ╎ 1 @Compiler/…ation.jl:65 maybe_validate_code(mi::Core.MethodI… ╎ ╎ ╎ 1 @Compiler/…tion.jl:239 validate_code ╎ ╎ ╎ ╎ 1 @Compiler/…tion.jl:234 validate_code!(errors::Vector{Comp… ╎ ╎ ╎ ╎ 1 @Compiler/…tion.jl:151 validate_code!(errors::Vector{Com… ╎ ╎ ╎ ╎ 1 @Compiler/…ion.jl:117 validate_val! ╎ ╎ ╎ ╎ 1 @Compiler/…ion.jl:91 _validate_val!(x::Any, errors::Ve… 1╎ ╎ ╎ ╎ 1 @Compiler/…on.jl:244 is_valid_argument Progress: 2 Time: 0:00:01 Progress: 6 Time: 0:00:01 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_69420.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) # 3. PC Score (Z = XV) is being calculated. ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000070f5e00b9780 Total snapshots: 403. Utilization: 0% ╎403 @Base/task.jl:1168 wait_forever() 402╎ 403 @Base/task.jl:1246 wait() # 4. Out-of-Core PC Score Calculation Progress: 2 Time: 0:00:00 Progress: 6 Time: 0:00:00 # 5. Delayed Centering Correction # 6. Normalize W and Calculate Eigenvalues Inner product (Dense): 0.9192125937682186 Inner product (Sparse MM): 0.9999999373577971 Inner product (Sparse BinCOO): 0.9999999373577971 All tests completed. PkgEval terminated after 2733.01s: test duration exceeded the time limit