Package evaluation to test EcoBase on Julia 1.14.0-DEV.1711 (41ad7d9eeb*) started at 2026-02-12T12:58:01.061 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.91s ################################################################################ # Installation # Installing EcoBase... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [a58aae7d] + EcoBase v0.1.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [a58aae7d] + EcoBase v0.1.7 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [3cdcf5f2] + RecipesBase v1.3.4 [ade2ca70] + Dates v1.11.0 [de0858da] + Printf v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 Installation completed after 1.21s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1939.1 ms ✓ Distances 2386.8 ms ✓ TableMetadataTools 38383.9 ms ✓ PrettyTables 1780.3 ms ✓ SortingAlgorithms 2246.3 ms ✓ EcoBase 42273.5 ms ✓ JuliaFormatter 4025.6 ms ✓ ResearchSoftwareMetadata 1299.7 ms ✓ Distances → DistancesSparseArraysExt 5090.3 ms ✓ StatsBase 83471.4 ms ✓ DataFrames 2742.1 ms ✓ RandomBooleanMatrices 9413.1 ms ✓ Diversity 11643.8 ms ✓ DataFramesMeta 13515.1 ms ✓ SpatialEcology 14 dependencies successfully precompiled in 221 seconds. 98 already precompiled. Precompilation completed after 242.9s ################################################################################ # Testing # Testing EcoBase Status `/tmp/jl_M4KU6y/Project.toml` [d3d5718d] Diversity v0.5.15 [a58aae7d] EcoBase v0.1.7 [d7ba0133] Git v1.5.0 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.1.5 [348f2d5d] SpatialEcology v0.9.17 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_M4KU6y/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [d1d4a3ce] BitFlags v0.1.9 [00ebfdb7] CSTParser v3.4.3 [8be319e6] Chain v1.0.0 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [1313f7d8] DataFramesMeta v0.15.6 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [d3d5718d] Diversity v0.5.15 [ffbed154] DocStringExtensions v0.9.5 [a58aae7d] EcoBase v0.1.7 [460bff9d] ExceptionUnwrapping v0.1.11 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.4.0 [cd3eb016] HTTP v1.10.19 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [58378933] ResearchSoftwareMetadata v0.1.5 [91c51154] SentinelArrays v1.4.9 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [348f2d5d] SpatialEcology v0.9.17 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.2 [9ce81f87] TableMetadataTools v0.1.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.28.0 [ddb6d928] YAML v0.4.16 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.53.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Potentially missing tests: - DataTypes.jl - EcoBase.jl - PlotRecipes.jl [ Info: Running tests for files: = Interface.jl [ Info: Running tests... * Testing Interface.jl ... Test Summary: | Pass Total Time EcoBase.jl | 23 23 46.2s [ Info: Crosswalk and clean testing: = JuliaFormatter = ResearchSoftwareMetadata * Verifying JuliaFormatter.jl ... fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). JuliaFormatter: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/bin/git rev-parse --show-toplevel`,["GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/share/git-core/templates", "CI=true", "OPENBLAS_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_M4KU6y", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/libexec/git-core", "JULIA_PKG_PRECOMPILE_AUTO=0", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ea6a498a51da4141980859d84bdf5a897e03fda/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "JULIA_NUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/65b962c68bed01a34a1a9ee23cbdde4dc3fe2246/bin:/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/bin:/home/pkgeval/.julia/artifacts/fc7cfafb3218745ad80066127ae3decb2c8a31f6/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:610 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:490 [3] read @ ./process.jl:499 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1154 [5] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [7] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2325 [inlined] [13] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [18] _start() @ Base ./client.jl:585 * Verifying ResearchSoftwareMetadata.jl ... fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). RSMD: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/bin/git rev-parse --show-toplevel`,["GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/share/git-core/templates", "CI=true", "OPENBLAS_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_M4KU6y", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/libexec/git-core", "JULIA_PKG_PRECOMPILE_AUTO=0", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ea6a498a51da4141980859d84bdf5a897e03fda/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "JULIA_NUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/65b962c68bed01a34a1a9ee23cbdde4dc3fe2246/bin:/home/pkgeval/.julia/artifacts/d43f9e5ac46e24164731f838f2035018de6bfee6/bin:/home/pkgeval/.julia/artifacts/fc7cfafb3218745ad80066127ae3decb2c8a31f6/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:610 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:490 [3] read @ ./process.jl:499 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1154 [5] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [7] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2325 [inlined] [13] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [18] _start() @ Base ./client.jl:585 Test Summary: | Error Total Time test set | 2 2 17.6s c = JuliaFormatter | 1 1 14.7s JuliaFormatter | 1 1 8.1s c = ResearchSoftwareMetadata | 1 1 2.9s RSMD | 1 1 0.3s RNG of the outermost testset: Xoshiro(0x9951797c85a704f1, 0xb9d66be14dfba82b, 0xb170153285fd9556, 0xe90a07f7bdd1fd77, 0x9d4b5ee33e4bd661) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/runtests.jl:91 Testing failed after 84.91s ERROR: LoadError: Package EcoBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3138 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3003 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:562 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 357.76s: package tests unexpectedly errored