Package evaluation to test CrystalNets on Julia 1.14.0-DEV.1711 (41ad7d9eeb*) started at 2026-02-12T16:42:24.834 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.13s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [7952bbbe] + CrystalNets v1.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.1.1 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] + PeriodicGraphs v0.10.4 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 6.15s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1603.5 ms ✓ Chemfiles_jll 1589.5 ms ✓ spglib_jll 7687.2 ms ✓ AtomsBase 70557.9 ms ✓ PeriodicGraphs 8329.2 ms ✓ Chemfiles 98139.6 ms ✓ PeriodicGraphEmbeddings 25686.2 ms ✓ PeriodicGraphEquilibriumPlacement 352436.3 ms ✓ CrystalNets 8 dependencies successfully precompiled in 567 seconds. 59 already precompiled. Precompilation completed after 592.8s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_fBmPYH/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.1 [86223c79] Graphs v1.13.4 [18c5b727] PeriodicGraphs v0.10.4 [90137ffa] StaticArrays v1.9.16 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_fBmPYH/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.1 [864edb3b] DataStructures v0.19.3 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.13.4 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] PeriodicGraphs v0.10.4 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 74 3 77 18m42.8s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 0.9s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 10m11.7s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 1m05.1s Test Summary: | Pass Broken Total Time Executable | 29 1 30 10.2s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 ..................................................................... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 37 running 1 of 1 signal (10): User defined signal 1 __gmpz_ui_sub at /opt/julia/bin/../lib/julia/libgmp.so.10 (unknown line) ui_sub! at ./gmp.jl:191 [inlined] ui_sub at ./gmp.jl:192 - at ./gmp.jl:553 [inlined] - at ./gmp.jl:558 [inlined] _broadcast_getindex_evalf at ./broadcast.jl:702 [inlined] _broadcast_getindex at ./broadcast.jl:675 [inlined] _getindex at ./broadcast.jl:698 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:619 [inlined] getindex at ./broadcast.jl:615 [inlined] macro expansion at ./broadcast.jl:998 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:997 [inlined] copyto! at ./broadcast.jl:950 [inlined] materialize! at ./broadcast.jl:908 [inlined] materialize! at ./broadcast.jl:905 [inlined] dixon_p at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:441 try_modulo at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:487 [inlined] dixon_solve at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:507 equilibrium at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/embedding.jl:41 CrystalNet at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/types.jl:675 UnderlyingNets at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/types.jl:1000 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:86 [inlined] #topological_genome#222 at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 unknown function (ip: 0x7536dba94a4c) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_77651.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x753738390249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_69420.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000075371ddfc010 Total snapshots: 71. Utilization: 100% ╎70 @Base/client.jl:585 _start() ╎ 70 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 70 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 70 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ 70 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _path::Stri… ╎ 70 @Base/loading.jl:3190 _include(mapexpr::Function, mod::Module, _path… ╎ ╎ 70 @Base/loading.jl:3130 include_string(mapexpr::typeof(identity), mod… ╎ ╎ 70 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 70 @CrystalNets/…query.jl:90 topological_genome(g::PeriodicGraph3D) ╎ ╎ 70 @CrystalNets/…uery.jl:90 #topological_genome#222 ╎ ╎ 70 @CrystalNets/…uery.jl:86 topological_genome ╎ ╎ ╎ 70 @CrystalNets/…pes.jl:1000 UnderlyingNets(g::PeriodicGraph3D, o… ╎ ╎ ╎ 70 @CrystalNets/…pes.jl:675 (CrystalNet3D)(cell::PeriodicGraphEm… ╎ ╎ ╎ 70 @PeriodicGraphEquilibriumPlacement/…:41 equilibrium(g::Perio… ╎ ╎ ╎ 70 @PeriodicGraphEquilibriumPlacement/…:507 dixon_solve(::Val{… ╎ ╎ ╎ 70 @PeriodicGraphEquilibriumPlacement/…:487 try_modulo ╎ ╎ ╎ ╎ 8 @PeriodicGraphEquilibriumPlacement/…:441 dixon_p(::Val{3}… ╎ ╎ ╎ ╎ 1 @Base/broadcast.jl:905 materialize! ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:908 materialize! ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:950 copyto! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:997 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:615 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:619 _getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:674 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:698 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:675 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:702 _broadcast_getindex_evalf ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:558 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:553 - ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:192 ui_sub(a::UInt64, b::BigI… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:191 ui_sub! ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…jl:116 * ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…l:119 mul ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…l:123 _mul ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:270 mul! ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:302 mul! ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:333 _mul! ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:348 generic_matmatmul_wrapper! ╎ ╎ ╎ ╎ ╎ 7 @SparseArrays/…:50 generic_matmatmul! ╎ ╎ ╎ ╎ ╎ 7 @SparseArrays/…:60 spdensemul! ╎ ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…:89 _spmatmul!(C::Matrix{BigInt}… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:963 getindex 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1004 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1056 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:362 rem ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:317 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:316 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_ui(a::UInt64) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:91 _spmatmul!(C::Matrix{BigInt}… ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:563 * 1╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:562 * ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:201 mul_si(a::BigInt, b::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:200 mul_si! ╎ ╎ ╎ ╎ 60 @PeriodicGraphEquilibriumPlacement/…:442 dixon_p(::Val{3}… ╎ ╎ ╎ ╎ 9 @PeriodicGraphEquilibriumPlacement/…:309 linsolve!(F::Li… ╎ ╎ ╎ ╎ 8 @SparseArrays/…jl:2800 getindex(A::SparseArrays.SparseM… 1╎ ╎ ╎ ╎ 4 @SparseArrays/…l:2784 getindex_cols(A::SparseArrays.Sp… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1020 setindex! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1025 _setindex! 2╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:1004 getindex ╎ ╎ ╎ ╎ 4 @SparseArrays/…l:2785 getindex_cols(A::SparseArrays.Sp… ╎ ╎ ╎ ╎ 2 @Base/array.jl:1020 setindex! 2╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1025 _setindex! 2╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:1004 getindex ╎ ╎ ╎ ╎ 1 @SparseArrays/…jl:1865 tril! ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1865 tril! ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1856 fkeep! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1792 _fkeep!(f::SparseArrays.var"#t… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1003 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:385 checkbounds 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:381 checkbounds ╎ ╎ ╎ ╎ 21 @PeriodicGraphEquilibriumPlacement/…:311 linsolve!(F::Li… ╎ ╎ ╎ ╎ 21 @PeriodicGraphEquilibriumPlacement/…:273 forward_substi… 1╎ ╎ ╎ ╎ 1 @Base/simdloop.jl:0 macro expansion ╎ ╎ ╎ ╎ 20 @Base/simdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ 20 @PeriodicGraphEquilibriumPlacement/…:274 macro expans… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:962 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:702 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:963 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1004 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1004 getindex ╎ ╎ ╎ ╎ ╎ 8 @PeriodicGraphEquilibriumPlacement/…:74 * ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:327 widemul 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ 7 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 6 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ 5 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:379 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:341 div ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:421 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/bool.jl:40 & ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1058 - 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…tors.jl:320 != 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:1034 Int32 ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:944 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:907 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ 9 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ 7 @PeriodicGraphEquilibriumPlacement/…:55 + ╎ ╎ ╎ ╎ ╎ 7 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 5 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:379 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:341 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:421 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1058 - 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ ╎ 2 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:1034 Int32 ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:944 toInt32 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:907 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:60 - ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 2 @Base/…otion.jl:492 mod ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:421 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:177 signbit 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ 13 @PeriodicGraphEquilibriumPlacement/…:312 linsolve!(F::Li… ╎ ╎ ╎ ╎ 7 @SparseArrays/…jl:2800 getindex(A::SparseArrays.SparseM… ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:2776 getindex_cols(A::SparseArrays.Sp… ╎ ╎ ╎ ╎ 1 @Base/boot.jl:675 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ ╎ 3 @SparseArrays/…l:2784 getindex_cols(A::SparseArrays.Sp… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1020 setindex! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1025 _setindex! 2╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:1004 getindex 1╎ ╎ ╎ ╎ 3 @SparseArrays/…l:2785 getindex_cols(A::SparseArrays.Sp… 2╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:1004 getindex ╎ ╎ ╎ ╎ 6 @SparseArrays/…jl:1867 triu! ╎ ╎ ╎ ╎ 6 @SparseArrays/…l:1867 triu! ╎ ╎ ╎ ╎ 6 @SparseArrays/…l:1856 fkeep! ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…l:1792 _fkeep!(f::SparseArrays.var"#t… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…tials.jl:1004 getindex ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…l:1793 _fkeep!(f::SparseArrays.var"#t… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…tials.jl:1004 getindex ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1796 _fkeep!(f::SparseArrays.var"#t… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rators.jl:320 != 1╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:637 == ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1797 _fkeep!(f::SparseArrays.var"#t… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1020 setindex! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1025 _setindex! ╎ ╎ ╎ ╎ 17 @PeriodicGraphEquilibriumPlacement/…:313 linsolve!(F::Li… ╎ ╎ ╎ ╎ 17 @PeriodicGraphEquilibriumPlacement/…:295 backward_subst… 1╎ ╎ ╎ ╎ 1 @Base/simdloop.jl:0 macro expansion ╎ ╎ ╎ ╎ 16 @Base/simdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ 16 @PeriodicGraphEquilibriumPlacement/…:296 macro expans… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:962 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:702 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:963 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1004 getindex 3╎ ╎ ╎ ╎ ╎ 3 @Base/…ntials.jl:1004 getindex ╎ ╎ ╎ ╎ ╎ 7 @PeriodicGraphEquilibriumPlacement/…:74 * ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:327 widemul 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:341 div 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:1034 Int32 ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:944 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:907 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ 3 @Base/…otion.jl:492 mod ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:421 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/bool.jl:40 & 2╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:55 + ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:341 div ╎ ╎ ╎ ╎ ╎ 3 @PeriodicGraphEquilibriumPlacement/…:60 - ╎ ╎ ╎ ╎ ╎ 3 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 3 @Base/…otion.jl:492 mod ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:390 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:420 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:379 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:341 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:421 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/bool.jl:40 & ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:177 signbit 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:444 dixon_p(::Val{3}… ╎ ╎ ╎ ╎ 2 @Base/broadcast.jl:905 materialize! ╎ ╎ ╎ ╎ 2 @Base/…oadcast.jl:908 materialize! ╎ ╎ ╎ ╎ 2 @Base/…oadcast.jl:950 copyto! ╎ ╎ ╎ ╎ 2 @Base/…adcast.jl:997 copyto! ╎ ╎ ╎ ╎ ╎ 2 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 2 @Base/…adcast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ 2 @Base/…ional.jl:774 setindex! ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1030 setindex! ╎ ╎ ╎ ╎ ╎ 2 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:315 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:218 set_si(a::Int32) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:69 BigInt 1╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! .┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000729d661761d0 Total snapshots: 354. Utilization: 0% ╎354 @Base/task.jl:1168 wait_forever() 353╎ 354 @Base/task.jl:1246 wait() .... [37] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/test/runtests.jl:416 getindex at ./essentials.jl:1004 [inlined] getindex_cols at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:2784 getindex at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:2800 linsolve! at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:309 dixon_p at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:442 try_modulo at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:487 [inlined] dixon_solve at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:507 equilibrium at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/embedding.jl:41 CrystalNet at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/types.jl:675 UnderlyingNets at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/types.jl:1000 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:86 [inlined] #topological_genome#222 at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 unknown function (ip: 0x7536dba94a4c) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_77651.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x753738390249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1353697024 (Pool: 1353692387; Big: 4637); GC: 511 PkgEval terminated after 2721.61s: test duration exceeded the time limit