Package evaluation to test sparseQFCA on Julia 1.14.0-DEV.1699 (9484a92029*) started at 2026-02-11T02:06:47.315 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.89s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed HiGHS_jll ───────────── v1.13.0+0 Installed DiffResults ─────────── v1.1.0 Installed MacroTools ──────────── v0.5.16 Installed ForwardDiff ─────────── v1.3.2 Installed SnoopPrecompile ─────── v1.0.3 Installed DataStructures ──────── v0.18.22 Installed SBML ────────────────── v1.6.0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed JLD2 ────────────────── v0.5.15 Installed HiGHS ───────────────── v1.21.0 Installed DelimitedFiles ──────── v1.9.1 Installed ConstructionBase ────── v1.6.0 Installed libaec_jll ──────────── v1.1.5+0 Installed MPICH_jll ───────────── v4.3.2+0 Installed oneTBB_jll ──────────── v2022.0.0+1 Installed Cbc_jll ─────────────── v200.1000.1200+0 Installed Cgl_jll ─────────────── v0.6000.900+0 Installed MKL_jll ─────────────── v2024.2.0+0 Installed HSL_jll ─────────────── v4.0.4+0 Installed CodecZlib ───────────── v0.7.8 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed Clp ─────────────────── v1.3.0 Installed ExprTools ───────────── v0.1.10 Installed OrderedCollections ──── v1.8.1 Installed SBMLFBCModels ───────── v1.1.1 Installed TranscodingStreams ──── v0.11.3 Installed Clp_jll ─────────────── v100.1700.1000+1 Installed HashArrayMappedTries ── v0.2.0 Installed Compat ──────────────── v4.18.1 Installed Statistics ──────────── v1.11.1 Installed PrecompileTools ─────── v1.3.3 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed CoinUtils_jll ───────── v200.1100.1200+0 Installed MUMPS_seq_jll ───────── v500.800.100+0 Installed Clarabel ────────────── v0.10.0 Installed IntelOpenMP_jll ─────── v2024.2.1+0 Installed TimerOutputs ────────── v0.5.29 Installed Colors ──────────────── v0.13.1 Installed CDDLib ──────────────── v0.10.2 Installed CommonSubexpressions ── v0.3.1 Installed ASL_jll ─────────────── v0.1.3+0 Installed CEnum ───────────────── v0.5.0 Installed StaticArraysCore ────── v1.4.4 Installed ConstraintTrees ─────── v1.11.0 Installed StaticArrays ────────── v1.9.16 Installed FileIO ──────────────── v1.18.0 Installed JuMP ────────────────── v1.29.4 Installed IrrationalConstants ─── v0.2.6 Installed CodecBzip2 ──────────── v0.8.5 Installed NaNMath ─────────────── v1.1.3 Installed Requires ────────────── v1.3.1 Installed ColorTypes ──────────── v0.12.1 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed GenericLinearAlgebra ── v0.3.19 Installed HDF5_jll ────────────── v1.14.6+0 Installed AbstractFBCModels ───── v1.3.0 Installed SCS ─────────────────── v2.6.1 Installed AMD ─────────────────── v0.5.3 Installed QDLDL ───────────────── v0.4.1 Installed StableRNGs ──────────── v1.0.4 Installed LogExpFunctions ─────── v0.3.29 Installed DiffRules ───────────── v1.15.1 Installed Pardiso ─────────────── v0.5.7 Installed Cbc ─────────────────── v1.3.0 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed OpenBLAS32_jll ──────── v0.3.30+0 Installed Parsers ─────────────── v2.8.3 Installed SBML_jll ────────────── v5.21.0+0 Installed ECOS_jll ────────────── v200.0.800+0 Installed JSON ────────────────── v0.21.4 Installed Hwloc_jll ───────────── v2.12.2+0 Installed GLPK_jll ────────────── v5.0.1+1 Installed IfElse ──────────────── v0.1.1 Installed ECOS ────────────────── v1.1.3 Installed Unitful ─────────────── v1.28.0 Installed ScopedValues ────────── v1.5.0 Installed XML2_jll ────────────── v2.13.9+0 Installed PikaParser ──────────── v0.6.1 Installed MathOptIIS ──────────── v0.1.1 Installed Reexport ────────────── v1.2.2 Installed SpecialFunctions ────── v2.6.1 Installed MPIPreferences ──────── v0.1.11 Installed FixedPointNumbers ───── v0.8.5 Installed JSONFBCModels ───────── v1.0.1 Installed Preferences ─────────── v1.5.1 Installed COBREXA ─────────────── v2.9.1 Installed BenchmarkTools ──────── v1.6.3 Installed MutableArithmetics ──── v1.6.7 Installed Libiconv_jll ────────── v1.18.0+0 Installed JLLWrappers ─────────── v1.7.1 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed METIS_jll ───────────── v5.1.2+1 Installed cddlib_jll ──────────── v0.94.14+0 Installed GLPK ────────────────── v1.2.1 Installed Polyhedra ───────────── v0.8.1 Installed HDF5 ────────────────── v0.17.2 Installed SCS_jll ─────────────── v300.200.1100+0 Installed Osi_jll ─────────────── v0.10800.1100+0 Installed DocStringExtensions ─── v0.9.5 Installed MathOptInterface ────── v1.49.0 Installed HSL ─────────────────── v0.4.3 Installed sparseQFCA ──────────── v2.3.0 Installing 26 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact ASL 276.3 KiB Installed artifact HSL 1.1 MiB Installed artifact Cbc 1.1 MiB Installed artifact SCS 543.6 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact cddlib 1.0 MiB Installed artifact MPICH 3.3 MiB Installed artifact Clp 1.4 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact GLPK 3.1 MiB Installed artifact libaec 49.6 KiB Installed artifact HDF5 5.7 MiB Installed artifact Bzip2 503.5 KiB Installed artifact METIS 1.1 MiB Installed artifact Osi 443.6 KiB Installed artifact ECOS 75.2 KiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact HiGHS 2.5 MiB Installed artifact Hwloc 3.5 MiB Installed artifact Cgl 656.0 KiB Installed artifact CoinUtils 811.6 KiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact SBML 6.0 MiB Installed artifact MUMPS_seq 8.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 [9961bab8] + Cbc v1.3.0 ⌅ [61c947e1] + Clarabel v0.10.0 [e2554f3b] + Clp v1.3.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.18.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.2 [60bf3e95] + GLPK v1.2.1 [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.2 ⌅ [34c5aeac] + HSL v0.4.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.21.0 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.29.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.49.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌅ [46dd5b70] + Pardiso v0.5.7 [69de0a69] + Parsers v2.8.3 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.1 [7e506255] + ScopedValues v1.5.0 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [38041ee0] + Cbc_jll v200.1000.1200+0 [3830e938] + Cgl_jll v0.6000.900+0 ⌅ [06985876] + Clp_jll v100.1700.1000+1 [be027038] + CoinUtils_jll v200.1100.1200+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [017b0a0e] + HSL_jll v4.0.4+0 [8fd58aa0] + HiGHS_jll v1.13.0+0 [e33a78d0] + Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [d00139f3] + METIS_jll v5.1.2+1 ⌅ [856f044c] + MKL_jll v2024.2.0+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [7da25872] + Osi_jll v0.10800.1100+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Pardiso → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4b618484bf94a52f02595cd73ac8a6417f4c0c70/build.log` Installation completed after 21.02s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4433.3 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4228.5 ms ✓ MacroTools 797.0 ms ✓ Reexport 1095.8 ms ✓ Statistics 1055.6 ms ✓ ConstructionBase 1924.3 ms ✓ IrrationalConstants 928.0 ms ✓ StaticArraysCore 1091.2 ms ✓ Requires 1189.1 ms ✓ OrderedCollections 879.7 ms ✓ StableRNGs 870.9 ms ✓ HashArrayMappedTries 1109.4 ms ✓ DocStringExtensions 853.0 ms ✓ CEnum 877.7 ms ✓ ExprTools 798.6 ms ✓ IfElse 1262.5 ms ✓ TranscodingStreams 1719.2 ms ✓ AMD 1629.1 ms ✓ GenericLinearAlgebra 1002.1 ms ✓ NaNMath 982.4 ms ✓ DelimitedFiles 33213.4 ms ✓ Unitful 1134.9 ms ✓ Compat 1128.9 ms ✓ Preferences 11551.0 ms ✓ MutableArithmetics 1732.1 ms ✓ CommonSubexpressions 3435.0 ms ✓ FixedPointNumbers 1115.5 ms ✓ Statistics → SparseArraysExt 665.9 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 683.7 ms ✓ DiffResults 8297.6 ms ✓ FileIO 866.8 ms ✓ ScopedValues 3814.4 ms ✓ AbstractFBCModels 1281.7 ms ✓ LogExpFunctions 1451.5 ms ✓ PikaParser 3096.5 ms ✓ TimerOutputs 965.5 ms ✓ CodecZlib 1429.9 ms ✓ QDLDL 2123.9 ms ✓ Unitful → PrintfExt 1917.2 ms ✓ Unitful → ConstructionBaseUnitfulExt 2011.4 ms ✓ Unitful → NaNMathExt 824.8 ms ✓ Compat → CompatLinearAlgebraExt 1177.3 ms ✓ JLLWrappers 1117.7 ms ✓ SnoopPrecompile 1303.7 ms ✓ MPIPreferences 721.2 ms ✓ PrecompileTools 2510.8 ms ✓ ColorTypes 3653.5 ms ✓ DataStructures 1440.7 ms ✓ METIS_jll 1430.6 ms ✓ libaec_jll 4730.1 ms ✓ IntelOpenMP_jll 1391.0 ms ✓ OpenBLAS32_jll 1403.9 ms ✓ Xorg_libpciaccess_jll 1391.8 ms ✓ Bzip2_jll 1400.7 ms ✓ LLVMOpenMP_jll 1346.4 ms ✓ GLPK_jll 1314.0 ms ✓ Libiconv_jll 1360.9 ms ✓ HiGHS_jll 4395.0 ms ✓ oneTBB_jll 1401.9 ms ✓ ECOS_jll 1371.9 ms ✓ cddlib_jll 1448.8 ms ✓ HSL_jll 1409.8 ms ✓ ASL_jll 1162.4 ms ✓ MicrosoftMPI_jll 1432.1 ms ✓ OpenSpecFun_jll 1373.6 ms ✓ CoinUtils_jll 4698.6 ms ✓ MPItrampoline_jll 12607.0 ms ✓ StaticArrays 15445.6 ms ✓ Parsers 44250.9 ms ✓ JLD2 1232.0 ms ✓ ColorTypes → StyledStringsExt 7121.3 ms ✓ Colors 3190.0 ms ✓ ConstraintTrees 1437.4 ms ✓ MUMPS_seq_jll 1013.4 ms ✓ CodecBzip2 1393.9 ms ✓ SCS_jll 1436.7 ms ✓ XML2_jll  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 8010.7 ms ✓ MKL_jll 9728.8 ms ✓ HSL 4916.0 ms ✓ SpecialFunctions 1428.2 ms ✓ Osi_jll 1467.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 1430.5 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 3749.6 ms ✓ JSON 1430.9 ms ✓ SBML_jll 1448.2 ms ✓ Hwloc_jll  Downloading artifact: MKL ERROR: LoadError: TypeError: in ccall library name, expected Symbol, got a value of type Expr Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:198  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3288  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3130  [9] include_string  @ ./loading.jl:3140 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:3 in expression starting at stdin:5 ✗ Pardiso 1254.5 ms ✓ DiffRules 1382.0 ms ✓ Clp_jll 2949.8 ms ✓ BenchmarkTools 6748.8 ms ✓ JSONFBCModels 16655.2 ms ✓ SBML 4786.6 ms ✓ MPICH_jll 4538.1 ms ✓ OpenMPI_jll 6094.8 ms ✓ ForwardDiff 1366.6 ms ✓ Cgl_jll 4775.3 ms ✓ SBMLFBCModels 5724.3 ms ✓ HDF5_jll 1700.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2359.7 ms ✓ Unitful → ForwardDiffExt 76088.8 ms ✓ MathOptInterface 1551.3 ms ✓ Cbc_jll 14168.0 ms ✓ HDF5 5348.2 ms ✓ MathOptIIS 48840.3 ms ✓ SCS 58937.4 ms ✓ JuMP 11513.9 ms ✓ Polyhedra 9085.9 ms ✓ GLPK 8392.7 ms ✓ ECOS 141425.3 ms ✓ Clarabel 28831.3 ms ✓ Clp 7821.9 ms ✓ Cbc 29132.5 ms ✓ HiGHS 19137.0 ms ✓ COBREXA 11202.9 ms ✓ Polyhedra → PolyhedraJuMPExt 7631.1 ms ✓ CDDLib 50530.2 ms ✓ sparseQFCA 114 dependencies successfully precompiled in 886 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 912.09s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_BZGbhA/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.2 [87dc4568] HiGHS v1.21.0 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [b8f27783] MathOptInterface v1.49.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.1 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_BZGbhA/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.18.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.2 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.2 ⌅ [34c5aeac] HSL v0.4.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.21.0 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.49.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌅ [46dd5b70] Pardiso v0.5.7 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.1 [7e506255] ScopedValues v1.5.0 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [38041ee0] Cbc_jll v200.1000.1200+0 [3830e938] Cgl_jll v0.6000.900+0 ⌅ [06985876] Clp_jll v100.1700.1000+1 [be027038] CoinUtils_jll v200.1100.1200+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [017b0a0e] HSL_jll v4.0.4+0 [8fd58aa0] HiGHS_jll v1.13.0+0 [e33a78d0] Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [d00139f3] METIS_jll v5.1.2+1 ⌅ [856f044c] MKL_jll v2024.2.0+0 ⌅ [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.100+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [7da25872] Osi_jll v0.10800.1100+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [477f73a3] libaec_jll v1.1.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 From worker 5: terminate called after throwing an instance of 'std::system_error' From worker 5: what(): Resource temporarily unavailable From worker 5: From worker 5: [671] signal 6 (-6): Aborted From worker 5: in expression starting at none:0 From worker 5: unknown function (ip: 0x7cfeb2f84ebc) at /lib/x86_64-linux-gnu/libc.so.6 From worker 5: gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 5: abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 5: __verbose_terminate_handler at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/vterminate.cc:95 From worker 5: __terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48 From worker 5: terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58 From worker 5: __cxa_throw at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98 From worker 5: __throw_system_error at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/system_error.cc:595 From worker 5: _M_start_thread at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/thread.cc:176 From worker 5: _ZN17HighsTaskExecutor10initializeEi.part.686 at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) From worker 5: _ZN5Highs19calledOptimizeModelEv at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) From worker 5: _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) From worker 5: _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) From worker 5: Highs_run at /home/pkgeval/.julia/packages/HiGHS/Lqk0n/src/gen/libhighs.jl:328 [inlined] From worker 5: #47 at /home/pkgeval/.julia/packages/HiGHS/Lqk0n/src/MOI_wrapper.jl:2258 [inlined] From worker 5: disable_sigint at ./c.jl:167 [inlined] From worker 5: optimize! at /home/pkgeval/.julia/packages/HiGHS/Lqk0n/src/MOI_wrapper.jl:2258 From worker 5: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Bridges/bridge_optimizer.jl:367 [inlined] From worker 5: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/MathOptInterface.jl:122 [inlined] From worker 5: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Utilities/cachingoptimizer.jl:370 From worker 5: unknown function (ip: 0x7cfe66578652) at (unknown file) From worker 5: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 5: ijl_apply_generic at /source/src/gf.c:4317 From worker 5: #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:609 From worker 5: optimize! at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:560 From worker 5: unknown function (ip: 0x7cfe66574b82) at (unknown file) From worker 5: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 5: ijl_apply_generic at /source/src/gf.c:4317 From worker 5: macro expansion at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:676 [inlined] From worker 5: #distributedReversibility_Correction##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:306 From worker 5: #pfor##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:86 From worker 5: unknown function (ip: 0x7cfe6653093a) at (unknown file) From worker 5: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 5: ijl_apply_generic at /source/src/gf.c:4317 From worker 5: jl_apply at /source/src/julia.h:2285 [inlined] From worker 5: jl_f_invokelatest at /source/src/builtins.c:889 From worker 5: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 5: ijl_apply_generic at /source/src/gf.c:4317 From worker 5: jl_apply at /source/src/julia.h:2285 [inlined] From worker 5: jl_f__apply_iterate at /source/src/builtins.c:876 From worker 5: #handle_msg##0 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:283 From worker 5: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70 From worker 5: unknown function (ip: 0x7cfe6650699b) at (unknown file) From worker 5: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 5: ijl_apply_generic at /source/src/gf.c:4317 From worker 5: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:79 From worker 5: #schedule_call##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:88 From worker 5: unknown function (ip: 0x7cfe665062bf) at (unknown file) From worker 5: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 5: ijl_apply_generic at /source/src/gf.c:4317 From worker 5: jl_apply at /source/src/julia.h:2285 [inlined] From worker 5: start_task at /source/src/task.c:1275 From worker 5: Allocations: 27729233 (Pool: 27728511; Big: 722); GC: 15 Worker 5 terminated. UNHANDLED TASK ERROR: EOFError: read end of file Stacktrace: [1] (::Base.var"#wait_locked#unsafe_read##0")(s::Sockets.TCPSocket, buf::IOBuffer, nb::Int64) @ Base ./stream.jl:976 [2] unsafe_read(s::Sockets.TCPSocket, p::Ptr{UInt8}, nb::UInt64) @ Base ./stream.jl:984 [3] unsafe_read @ ./io.jl:908 [inlined] [4] unsafe_read(s::Sockets.TCPSocket, p::Base.RefValue{NTuple{4, Int64}}, n::Int64) @ Base ./io.jl:907 [5] read! @ ./io.jl:912 [inlined] [6] deserialize_hdr_raw @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/messages.jl:167 [inlined] [7] message_handler_loop(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:172 [8] process_tcp_streams(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:133 [9] (::Distributed.var"#process_messages##0#process_messages##1"{Sockets.TCPSocket, Sockets.TCPSocket, Bool})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:121 UNHANDLED TASK ERROR: ProcessExitedException(5) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 ERROR: LoadError: TaskFailedException nested task error: ProcessExitedException(5) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}, SolverName::String, OctuplePrecision::Bool, printLevel::Int64) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:663 [4] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:594 [5] top-level scope @ ~/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [10] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 ┌ Warning: Forcibly interrupting busy workers │ exception = rmprocs: pids [2, 3, 4, 6, 7, 8] not terminated after 5.0 seconds. └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1269 ┌ Warning: rmprocs: process 1 not removed └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1065 Testing failed after 1144.83s ERROR: LoadError: Package sparseQFCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2110.1s: package tests unexpectedly errored