Package evaluation to test sparseQFCA on Julia 1.14.0-DEV.1674 (5735163b34*) started at 2026-02-06T00:47:59.157 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.11s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed MacroTools ──────────── v0.5.16 Installed DataStructures ──────── v0.18.22 Installed DiffResults ─────────── v1.1.0 Installed HiGHS_jll ───────────── v1.13.0+0 Installed SnoopPrecompile ─────── v1.0.3 Installed ForwardDiff ─────────── v1.3.2 Installed JLD2 ────────────────── v0.5.15 Installed SBML ────────────────── v1.6.0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed MKL_jll ─────────────── v2024.2.0+0 Installed libaec_jll ──────────── v1.1.5+0 Installed MPICH_jll ───────────── v4.3.2+0 Installed DelimitedFiles ──────── v1.9.1 Installed HiGHS ───────────────── v1.21.0 Installed ConstructionBase ────── v1.6.0 Installed Clp ─────────────────── v1.3.0 Installed oneTBB_jll ──────────── v2022.0.0+1 Installed CodecZlib ───────────── v0.7.8 Installed ExprTools ───────────── v0.1.10 Installed OrderedCollections ──── v1.8.1 Installed TranscodingStreams ──── v0.11.3 Installed Cgl_jll ─────────────── v0.6000.900+0 Installed Cbc_jll ─────────────── v200.1000.1200+0 Installed Compat ──────────────── v4.18.1 Installed HSL_jll ─────────────── v4.0.4+0 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed Clp_jll ─────────────── v100.1700.1000+1 Installed HashArrayMappedTries ── v0.2.0 Installed SBMLFBCModels ───────── v1.1.1 Installed Statistics ──────────── v1.11.1 Installed PrecompileTools ─────── v1.3.3 Installed MUMPS_seq_jll ───────── v500.800.100+0 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed Clarabel ────────────── v0.10.0 Installed CoinUtils_jll ───────── v200.1100.1200+0 Installed IntelOpenMP_jll ─────── v2024.2.1+0 Installed CDDLib ──────────────── v0.10.2 Installed ConstraintTrees ─────── v1.11.0 Installed Colors ──────────────── v0.13.1 Installed TimerOutputs ────────── v0.5.29 Installed CEnum ───────────────── v0.5.0 Installed ASL_jll ─────────────── v0.1.3+0 Installed StaticArraysCore ────── v1.4.4 Installed CommonSubexpressions ── v0.3.1 Installed IrrationalConstants ─── v0.2.6 Installed StaticArrays ────────── v1.9.16 Installed AbstractFBCModels ───── v1.3.0 Installed FileIO ──────────────── v1.18.0 Installed CodecBzip2 ──────────── v0.8.5 Installed JuMP ────────────────── v1.29.4 Installed Requires ────────────── v1.3.1 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed ColorTypes ──────────── v0.12.1 Installed NaNMath ─────────────── v1.1.3 Installed QDLDL ───────────────── v0.4.1 Installed GenericLinearAlgebra ── v0.3.19 Installed SCS ─────────────────── v2.6.1 Installed LogExpFunctions ─────── v0.3.29 Installed StableRNGs ──────────── v1.0.4 Installed AMD ─────────────────── v0.5.3 Installed HDF5_jll ────────────── v1.14.6+0 Installed DiffRules ───────────── v1.15.1 Installed Pardiso ─────────────── v0.5.7 Installed SBML_jll ────────────── v5.21.0+0 Installed Parsers ─────────────── v2.8.3 Installed JSON ────────────────── v0.21.4 Installed OpenBLAS32_jll ──────── v0.3.30+0 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed Cbc ─────────────────── v1.3.0 Installed ECOS_jll ────────────── v200.0.800+0 Installed Hwloc_jll ───────────── v2.12.2+0 Installed ECOS ────────────────── v1.1.3 Installed ScopedValues ────────── v1.5.0 Installed GLPK_jll ────────────── v5.0.1+1 Installed IfElse ──────────────── v0.1.1 Installed PikaParser ──────────── v0.6.1 Installed Unitful ─────────────── v1.28.0 Installed COBREXA ─────────────── v2.9.1 Installed XML2_jll ────────────── v2.13.9+0 Installed JSONFBCModels ───────── v1.0.1 Installed SpecialFunctions ────── v2.6.1 Installed MathOptIIS ──────────── v0.1.1 Installed Reexport ────────────── v1.2.2 Installed FixedPointNumbers ───── v0.8.5 Installed MPIPreferences ──────── v0.1.11 Installed Preferences ─────────── v1.5.1 Installed MutableArithmetics ──── v1.6.7 Installed JLLWrappers ─────────── v1.7.1 Installed Libiconv_jll ────────── v1.18.0+0 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed BenchmarkTools ──────── v1.6.3 Installed Polyhedra ───────────── v0.8.1 Installed cddlib_jll ──────────── v0.94.14+0 Installed METIS_jll ───────────── v5.1.2+1 Installed MPItrampoline_jll ───── v5.5.4+0 Installed SCS_jll ─────────────── v300.200.1100+0 Installed Osi_jll ─────────────── v0.10800.1100+0 Installed GLPK ────────────────── v1.2.1 Installed DocStringExtensions ─── v0.9.5 Installed HDF5 ────────────────── v0.17.2 Installed HSL ─────────────────── v0.4.3 Installed MathOptInterface ────── v1.49.0 Installed sparseQFCA ──────────── v2.3.0 Installing 26 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact ASL 276.3 KiB Installed artifact HSL 1.1 MiB Installed artifact METIS 1.1 MiB Installed artifact Osi 443.6 KiB Installed artifact Clp 1.4 MiB Installed artifact libaec 49.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact MPICH 3.3 MiB Installed artifact XML2 2.5 MiB Installed artifact ECOS 75.2 KiB Installed artifact SCS 543.6 KiB Installed artifact Bzip2 503.5 KiB Installed artifact HDF5 5.7 MiB Installed artifact HiGHS 2.5 MiB Installed artifact Hwloc 3.5 MiB Installed artifact Cgl 656.0 KiB Installed artifact GLPK 3.1 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact CoinUtils 811.6 KiB Installed artifact Cbc 1.1 MiB Installed artifact cddlib 1.0 MiB Installed artifact MUMPS_seq 8.6 MiB Installed artifact SBML 6.0 MiB Updating `~/.julia/environments/v1.14/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 [9961bab8] + Cbc v1.3.0 ⌅ [61c947e1] + Clarabel v0.10.0 [e2554f3b] + Clp v1.3.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.18.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.2 [60bf3e95] + GLPK v1.2.1 [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.2 ⌅ [34c5aeac] + HSL v0.4.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.21.0 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.29.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.49.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌅ [46dd5b70] + Pardiso v0.5.7 [69de0a69] + Parsers v2.8.3 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.1 [7e506255] + ScopedValues v1.5.0 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [38041ee0] + Cbc_jll v200.1000.1200+0 [3830e938] + Cgl_jll v0.6000.900+0 ⌅ [06985876] + Clp_jll v100.1700.1000+1 [be027038] + CoinUtils_jll v200.1100.1200+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [017b0a0e] + HSL_jll v4.0.4+0 [8fd58aa0] + HiGHS_jll v1.13.0+0 [e33a78d0] + Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [d00139f3] + METIS_jll v5.1.2+1 ⌅ [856f044c] + MKL_jll v2024.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [7da25872] + Osi_jll v0.10800.1100+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Pardiso → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4b618484bf94a52f02595cd73ac8a6417f4c0c70/build.log` Installation completed after 23.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4339.4 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4657.9 ms ✓ MacroTools 805.1 ms ✓ Reexport 1150.7 ms ✓ Statistics 1185.1 ms ✓ ConstructionBase 2130.2 ms ✓ IrrationalConstants 990.8 ms ✓ StaticArraysCore 1224.3 ms ✓ Requires 1304.7 ms ✓ OrderedCollections 970.6 ms ✓ StableRNGs 957.2 ms ✓ HashArrayMappedTries 1201.0 ms ✓ DocStringExtensions 894.3 ms ✓ CEnum 933.2 ms ✓ ExprTools 820.0 ms ✓ IfElse 1315.1 ms ✓ TranscodingStreams 1760.2 ms ✓ AMD 1695.6 ms ✓ GenericLinearAlgebra 1051.8 ms ✓ NaNMath 1053.2 ms ✓ DelimitedFiles 33702.5 ms ✓ Unitful 1227.0 ms ✓ Compat 1207.4 ms ✓ Preferences 11750.9 ms ✓ MutableArithmetics 1916.4 ms ✓ CommonSubexpressions 4230.4 ms ✓ FixedPointNumbers 1389.8 ms ✓ Statistics → SparseArraysExt 911.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1048.9 ms ✓ DiffResults 9354.2 ms ✓ FileIO 954.9 ms ✓ ScopedValues 4641.4 ms ✓ AbstractFBCModels 1509.5 ms ✓ LogExpFunctions 1706.3 ms ✓ PikaParser 3473.5 ms ✓ TimerOutputs 1026.7 ms ✓ CodecZlib 1444.9 ms ✓ QDLDL 2275.0 ms ✓ Unitful → PrintfExt 3094.0 ms ✓ Unitful → ConstructionBaseUnitfulExt 2475.7 ms ✓ Unitful → NaNMathExt 1260.4 ms ✓ Compat → CompatLinearAlgebraExt 1377.3 ms ✓ JLLWrappers 1210.5 ms ✓ SnoopPrecompile 1516.0 ms ✓ MPIPreferences 982.3 ms ✓ PrecompileTools 2795.1 ms ✓ ColorTypes 3943.2 ms ✓ DataStructures 1467.1 ms ✓ METIS_jll 1469.7 ms ✓ libaec_jll 4905.3 ms ✓ IntelOpenMP_jll 1360.3 ms ✓ OpenBLAS32_jll 1440.7 ms ✓ Xorg_libpciaccess_jll 1478.1 ms ✓ Bzip2_jll 1549.7 ms ✓ LLVMOpenMP_jll 1479.5 ms ✓ GLPK_jll 1539.0 ms ✓ Libiconv_jll 1482.3 ms ✓ HiGHS_jll 5020.9 ms ✓ oneTBB_jll 1521.7 ms ✓ ECOS_jll 1511.6 ms ✓ cddlib_jll 1525.0 ms ✓ HSL_jll 1399.5 ms ✓ ASL_jll 1136.3 ms ✓ MicrosoftMPI_jll 1371.9 ms ✓ OpenSpecFun_jll 1352.9 ms ✓ CoinUtils_jll 4134.5 ms ✓ MPItrampoline_jll 13033.1 ms ✓ StaticArrays 15768.5 ms ✓ Parsers 46249.3 ms ✓ JLD2 1287.5 ms ✓ ColorTypes → StyledStringsExt 8574.7 ms ✓ Colors 3722.9 ms ✓ ConstraintTrees 2204.2 ms ✓ MUMPS_seq_jll 1385.4 ms ✓ CodecBzip2 1510.7 ms ✓ SCS_jll 1747.5 ms ✓ XML2_jll  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10403.4 ms ✓ MKL_jll 13080.7 ms ✓ HSL 6022.9 ms ✓ SpecialFunctions 2234.9 ms ✓ Osi_jll 1689.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1598.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 4152.9 ms ✓ JSON 1865.4 ms ✓ SBML_jll 1618.4 ms ✓ Hwloc_jll  Downloading artifact: MKL ERROR: LoadError: TypeError: in ccall library name, expected Symbol, got a value of type Expr Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:198  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3288  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3130  [9] include_string  @ ./loading.jl:3140 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:3 in expression starting at stdin:5 ✗ Pardiso 1850.7 ms ✓ DiffRules 1862.5 ms ✓ Clp_jll 3147.7 ms ✓ BenchmarkTools 7098.1 ms ✓ JSONFBCModels 18071.9 ms ✓ SBML 5122.6 ms ✓ MPICH_jll 4905.0 ms ✓ OpenMPI_jll 8084.6 ms ✓ ForwardDiff 1499.9 ms ✓ Cgl_jll 4831.7 ms ✓ SBMLFBCModels 7768.3 ms ✓ HDF5_jll 2105.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3417.6 ms ✓ Unitful → ForwardDiffExt 80472.0 ms ✓ MathOptInterface 1672.3 ms ✓ Cbc_jll 11906.8 ms ✓ HDF5 4635.8 ms ✓ MathOptIIS 50993.4 ms ✓ SCS 64735.2 ms ✓ JuMP 12573.7 ms ✓ Polyhedra 9753.9 ms ✓ GLPK 9433.7 ms ✓ ECOS 181942.5 ms ✓ Clarabel 30855.1 ms ✓ Clp 8234.6 ms ✓ Cbc 30466.3 ms ✓ HiGHS 18640.1 ms ✓ COBREXA 10734.7 ms ✓ Polyhedra → PolyhedraJuMPExt 7892.4 ms ✓ CDDLib 47681.9 ms ✓ sparseQFCA 114 dependencies successfully precompiled in 980 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 994.24s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_orbIuB/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.2 [87dc4568] HiGHS v1.21.0 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [b8f27783] MathOptInterface v1.49.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.1 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_orbIuB/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.18.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.2 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.2 ⌅ [34c5aeac] HSL v0.4.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.21.0 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.49.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌅ [46dd5b70] Pardiso v0.5.7 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.1 [7e506255] ScopedValues v1.5.0 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [38041ee0] Cbc_jll v200.1000.1200+0 [3830e938] Cgl_jll v0.6000.900+0 ⌅ [06985876] Clp_jll v100.1700.1000+1 [be027038] CoinUtils_jll v200.1100.1200+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [017b0a0e] HSL_jll v4.0.4+0 [8fd58aa0] HiGHS_jll v1.13.0+0 [e33a78d0] Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [d00139f3] METIS_jll v5.1.2+1 ⌅ [856f044c] MKL_jll v2024.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.100+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [7da25872] Osi_jll v0.10800.1100+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [477f73a3] libaec_jll v1.1.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 Distributed Reversibility Correction: Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-6 Number of reversibe blocked in forward direction : 44 Number of reversibe blocked in backward direction : 51 Number of irreversible reactions after Correction : 313 Number of reversible reactions after Correction : 206 terminate called after throwing an instance of 'std::system_error' what(): Resource temporarily unavailable [663] signal 6 (-6): Aborted in expression starting at timing.jl:395 unknown function (ip: 0x700ea2d1febc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) __verbose_terminate_handler at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/vterminate.cc:95 __terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48 terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58 __cxa_throw at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98 __throw_system_error at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/system_error.cc:595 _M_start_thread at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/thread.cc:176 _ZN17HighsTaskExecutor10initializeEi.part.686 at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) _ZN5Highs19calledOptimizeModelEv at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/634f5b203e1b48dd0c38b141e6b690f494632d7c/lib/libhighs.so (unknown line) Highs_run at /home/pkgeval/.julia/packages/HiGHS/Lqk0n/src/gen/libhighs.jl:328 [inlined] #47 at /home/pkgeval/.julia/packages/HiGHS/Lqk0n/src/MOI_wrapper.jl:2258 [inlined] disable_sigint at ./c.jl:167 [inlined] optimize! at /home/pkgeval/.julia/packages/HiGHS/Lqk0n/src/MOI_wrapper.jl:2258 optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Bridges/bridge_optimizer.jl:367 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x700e7251ded2) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:609 optimize! at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:560 [inlined] QFCA at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/QFCA/SQFCA.jl:79 QFCA at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/QFCA/SQFCA.jl:61 unknown function (ip: 0x700e725de0b4) at (unknown file) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 top-level scope at ./timing.jl:739 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_invoke at /source/src/gf.c:4127 ijl_eval_thunk at /source/src/toplevel.c:757 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3130 _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 _include at ./loading.jl:3190 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_61287.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_72586.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4120 [inlined] ijl_apply_generic at /source/src/gf.c:4317 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x700ea2cbc249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 68394667 (Pool: 68393484; Big: 1183); GC: 29 Testing failed after 211.77s ERROR: LoadError: Package sparseQFCA errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval crashed after 2273.63s: the process was aborted