Package evaluation to test PhyNEST on Julia 1.14.0-DEV.1674 (5735163b34*) started at 2026-02-06T01:23:07.433 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.75s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed InlineStrings ─────────────── v1.4.5 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Functors ──────────────────── v0.3.0 Installed Optim ─────────────────────── v1.13.3 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed OrderedCollections ────────── v1.8.1 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed libsass_jll ───────────────── v3.6.6+0 Installed SentinelArrays ────────────── v1.4.9 Installed FileIO ────────────────────── v1.18.0 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed EnumX ─────────────────────── v1.0.6 Installed Graphics ──────────────────── v1.1.3 Installed Tables ────────────────────── v1.12.1 Installed QuadGK ────────────────────── v2.11.2 Installed NLSolversBase ─────────────── v7.10.0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed TableTraits ───────────────── v1.0.1 Installed Preferences ───────────────── v1.5.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed Crayons ───────────────────── v4.1.1 Installed ADTypes ───────────────────── v1.21.0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed Sass ──────────────────────── v0.2.0 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed DiffResults ───────────────── v1.1.0 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.16.0 Installed CodecZlib ─────────────────── v0.7.8 Installed DelimitedFiles ────────────── v1.9.1 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Xorg_libXdamage_jll ───────── v1.1.6+0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed MethodAnalysis ────────────── v1.0.0 Installed ArrayInterface ────────────── v7.22.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed Observables ───────────────── v0.5.5 Installed RoundingIntegers ──────────── v1.1.0 Installed Cairo ─────────────────────── v1.1.1 Installed CommonSubexpressions ──────── v0.3.1 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed IrrationalConstants ───────── v0.2.6 Installed libpng_jll ────────────────── v1.6.54+0 Installed BitFlags ──────────────────── v0.1.9 Installed IOCapture ─────────────────── v0.2.5 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed BenchmarkTools ────────────── v1.6.3 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed Graphene_jll ──────────────── v1.10.8+0 Installed PooledArrays ──────────────── v1.4.3 Installed PDMats ────────────────────── v0.11.35 Installed WorkerUtilities ───────────── v1.6.1 Installed FASTX ─────────────────────── v2.1.7 Installed DocStringExtensions ───────── v0.9.5 Installed ForwardDiff ───────────────── v1.3.2 Installed BioSequences ──────────────── v3.5.1 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DifferentiationInterface ──── v0.7.16 Installed MathOptInterface ──────────── v1.49.0 Installed AliasTables ───────────────── v1.1.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed StringViews ───────────────── v1.3.7 Installed StatsModels ───────────────── v0.6.33 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Combinatorics ─────────────── v1.1.0 Installed DataAPI ───────────────────── v1.16.0 Installed SIMD ──────────────────────── v3.7.2 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed InvertedIndices ───────────── v1.3.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed GtkObservables ────────────── v2.2.1 Installed Twiddle ───────────────────── v1.1.2 Installed Colors ────────────────────── v0.13.1 Installed StaticArraysCore ──────────── v1.4.4 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed StaticArrays ──────────────── v1.9.16 Installed ColorTypes ────────────────── v0.12.1 Installed StringManipulation ────────── v0.4.2 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Documenter ────────────────── v0.27.25 Installed Glib_jll ──────────────────── v2.86.2+0 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed Git_jll ───────────────────── v2.53.0+0 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed PrettyTables ──────────────── v3.1.2 Installed Distributions ─────────────── v0.25.123 Installed Rmath ─────────────────────── v0.9.0 Installed FiniteDiff ────────────────── v2.29.0 Installed CSV ───────────────────────── v0.10.15 Installed DocumenterTools ───────────── v0.1.21 Installed StatsFuns ─────────────────── v1.5.2 Installed BioGenerics ───────────────── v0.1.5 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed PhyloNetworks ─────────────── v0.15.3 Installed JLLWrappers ───────────────── v1.7.1 Installed MutableArithmetics ────────── v1.6.7 Installed DataFrames ────────────────── v1.8.1 Installed XZ_jll ────────────────────── v5.8.2+0 Installed Pango_jll ─────────────────── v1.57.0+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed FilePathsBase ─────────────── v0.9.24 Installed NLopt ─────────────────────── v0.6.5 Installed Adapt ─────────────────────── v4.4.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed Libmount_jll ──────────────── v2.41.2+0 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed FlameGraphs ───────────────── v1.1.0 Installed GLM ───────────────────────── v1.8.3 Installed TranscodingStreams ────────── v0.11.3 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Suppressor ────────────────── v0.2.8 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.8.0 Installed PrecompileTools ───────────── v1.3.3 Installed PositiveFactorizations ────── v0.2.4 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed CodecBzip2 ────────────────── v0.8.5 Installed BioSymbols ────────────────── v5.2.0 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed ProfileView ───────────────── v1.10.2 Installed XML2_jll ──────────────────── v2.13.9+0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed IntervalSets ──────────────── v0.7.13 Installed SpecialFunctions ──────────── v2.6.1 Installed PtrArrays ─────────────────── v1.3.0 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Gumbo ─────────────────────── v0.8.3 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Gtk4 ──────────────────────── v0.7.11 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed LineSearches ──────────────── v7.5.1 Installed ANSIColoredPrinters ───────── v0.0.1 Installed MathProgBase ──────────────── v0.7.8 Installed Automa ────────────────────── v1.1.0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed PhyNEST ───────────────────── v0.1.12 Installing 60 artifacts Installed artifact Libffi 44.2 KiB Installed artifact Wayland 390.6 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Pixman 372.2 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Graphene 223.2 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact LERC 272.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact Cairo 2.2 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact libpng 328.7 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact Libmount 6.5 MiB Installed artifact iso_codes 7.5 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Gumbo 703.8 KiB Installed artifact Libiconv 1.9 MiB Installed artifact NLopt 322.7 KiB Installed artifact LZO 208.9 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Glib 7.7 MiB Installed artifact Rmath 121.9 KiB Installed artifact Pango 2.0 MiB Installed artifact Expat 283.3 KiB Installed artifact XML2 2.5 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact libsass 8.9 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Bzip2 503.5 KiB Installed artifact Libepoxy 504.4 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact GTK4 14.1 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Librsvg 9.3 MiB Installed artifact Git 49.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.6 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.18.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.2 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.11 [8710efd8] + GtkObservables v2.2.1 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.13 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.49.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [c46f51b8] + ProfileView v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.7 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [7746bdde] + Glib_jll v2.86.2+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.54+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 31.6s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5187.1 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4418.7 ms ✓ MacroTools 1627.6 ms ✓ InlineStrings 763.7 ms ✓ Reexport 1089.7 ms ✓ ConstructionBase 2266.4 ms ✓ IrrationalConstants 1085.4 ms ✓ DataValueInterfaces 1135.5 ms ✓ StatsAPI 1146.2 ms ✓ Observables 1192.5 ms ✓ Twiddle 1044.1 ms ✓ IntervalSets 833.1 ms ✓ CEnum 1142.6 ms ✓ Functors 1981.8 ms ✓ Combinatorics 1059.7 ms ✓ StringViews 1263.0 ms ✓ TranscodingStreams 843.0 ms ✓ LaTeXStrings 1096.2 ms ✓ Statistics 965.6 ms ✓ StaticArraysCore 806.2 ms ✓ Suppressor 801.0 ms ✓ PtrArrays 995.5 ms ✓ ANSIColoredPrinters 975.1 ms ✓ PositiveFactorizations 881.7 ms ✓ DataAPI 820.1 ms ✓ InvertedIndices 835.6 ms ✓ BitFlags 866.5 ms ✓ ShiftedArrays 1115.1 ms ✓ AbstractTrees 844.1 ms ✓ EnumX 987.8 ms ✓ WorkerUtilities 2072.9 ms ✓ FillArrays 835.3 ms ✓ IndirectArrays 843.8 ms ✓ RoundingIntegers 1300.8 ms ✓ OrderedCollections 1462.8 ms ✓ ADTypes 1126.9 ms ✓ DocStringExtensions 762.6 ms ✓ IteratorInterfaceExtensions 1809.2 ms ✓ Crayons 847.2 ms ✓ IOCapture 961.0 ms ✓ DelimitedFiles 995.0 ms ✓ NaNMath 1298.8 ms ✓ Requires 2059.9 ms ✓ PDMats 2345.9 ms ✓ MathProgBase 940.7 ms ✓ Scratch 2100.5 ms ✓ SentinelArrays 1141.1 ms ✓ Compat 1131.4 ms ✓ Preferences 11403.5 ms ✓ MutableArithmetics 1684.5 ms ✓ CommonSubexpressions 808.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 748.4 ms ✓ IntervalSets → IntervalSetsRandomExt 762.8 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 925.0 ms ✓ BioGenerics 968.5 ms ✓ CodecZlib 1276.9 ms ✓ Statistics → SparseArraysExt 3691.5 ms ✓ FixedPointNumbers 771.9 ms ✓ IntervalSets → IntervalSetsStatisticsExt 861.8 ms ✓ DiffResults 934.3 ms ✓ AliasTables 966.3 ms ✓ Missings 999.4 ms ✓ PooledArrays 860.3 ms ✓ LeftChildRightSiblingTrees 1053.9 ms ✓ MethodAnalysis 1620.8 ms ✓ FillArrays → FillArraysSparseArraysExt 956.4 ms ✓ FillArrays → FillArraysStatisticsExt 1095.0 ms ✓ ADTypes → ADTypesConstructionBaseExt 1892.4 ms ✓ DifferentiationInterface 1361.6 ms ✓ LogExpFunctions 881.2 ms ✓ TableTraits 925.2 ms ✓ Adapt 9049.8 ms ✓ FileIO 1474.2 ms ✓ FillArrays → FillArraysPDMatsExt 842.2 ms ✓ Compat → CompatLinearAlgebraExt 912.4 ms ✓ PrecompileTools 1209.4 ms ✓ JLLWrappers 2981.6 ms ✓ Setfield 2663.3 ms ✓ ColorTypes 1513.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1769.1 ms ✓ Tables 1139.0 ms ✓ ArrayInterface 1251.6 ms ✓ Adapt → AdaptSparseArraysExt 2012.3 ms ✓ FilePathsBase 3889.5 ms ✓ DataStructures 2600.5 ms ✓ BioSymbols 3197.8 ms ✓ StringManipulation 14330.1 ms ✓ SIMD 13611.9 ms ✓ StaticArrays 15836.1 ms ✓ Parsers 1491.8 ms ✓ Libffi_jll 1446.3 ms ✓ LZO_jll 1520.9 ms ✓ Bzip2_jll 1488.4 ms ✓ XZ_jll 1513.0 ms ✓ NLopt_jll 1436.7 ms ✓ Rmath_jll 1448.7 ms ✓ OpenSpecFun_jll 1353.1 ms ✓ Xorg_xtrans_jll 1451.1 ms ✓ libpng_jll 1372.7 ms ✓ iso_codes_jll 1192.3 ms ✓ EpollShim_jll 1326.9 ms ✓ Wayland_protocols_jll 1428.7 ms ✓ Libmount_jll 1407.6 ms ✓ Libuuid_jll 1374.5 ms ✓ FriBidi_jll 1381.7 ms ✓ LERC_jll 1444.9 ms ✓ Git_LFS_jll 1396.1 ms ✓ libsass_jll 1418.8 ms ✓ Gumbo_jll 1405.0 ms ✓ Xorg_libXau_jll 1489.4 ms ✓ OpenSSH_jll 1396.3 ms ✓ hicolor_icon_theme_jll 1391.2 ms ✓ Graphite2_jll 1385.0 ms ✓ LLVMOpenMP_jll 1392.7 ms ✓ Libiconv_jll 1410.9 ms ✓ Xorg_libXdmcp_jll 1403.7 ms ✓ Expat_jll 1450.9 ms ✓ JpegTurbo_jll 1293.4 ms ✓ ColorTypes → StyledStringsExt 7994.8 ms ✓ Colors 765.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1278.0 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2728.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 930.2 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1504.4 ms ✓ SortingAlgorithms 2670.2 ms ✓ QuadGK 9233.4 ms ✓ BioSequences 38248.0 ms ✓ PrettyTables 17550.3 ms ✓ Automa 1439.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1447.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1556.9 ms ✓ FillArrays → FillArraysStaticArraysExt 1493.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1347.3 ms ✓ Adapt → AdaptStaticArraysExt 3748.5 ms ✓ JSON 960.0 ms ✓ InlineStrings → ParsersExt 1015.7 ms ✓ CodecBzip2 1423.2 ms ✓ FreeType2_jll 1488.7 ms ✓ Rmath 4844.7 ms ✓ SpecialFunctions 1971.6 ms ✓ Sass 1209.0 ms ✓ Gumbo 1418.7 ms ✓ adwaita_icon_theme_jll 1408.3 ms ✓ Pixman_jll 1431.1 ms ✓ XML2_jll 1437.3 ms ✓ GettextRuntime_jll 1497.5 ms ✓ Xorg_libxcb_jll 1468.8 ms ✓ Git_jll 1380.9 ms ✓ Wayland_jll 1433.7 ms ✓ Libtiff_jll 1351.2 ms ✓ Graphics 10571.7 ms ✓ FlameGraphs 1336.6 ms ✓ FiniteDiff 4849.6 ms ✓ StatsBase 82592.3 ms ✓ DataFrames 15948.6 ms ✓ FASTX 7500.6 ms ✓ Documenter 2833.2 ms ✓ BenchmarkTools 2411.1 ms ✓ WeakRefStrings 1591.8 ms ✓ Fontconfig_jll 2183.9 ms ✓ HypergeometricFunctions 1276.3 ms ✓ DiffRules 1452.7 ms ✓ Glib_jll 1401.2 ms ✓ Xorg_libX11_jll 953.3 ms ✓ Git 1388.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1320.1 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1030.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2172.0 ms ✓ FASTX → BioSequencesExt 26507.7 ms ✓ CSV 2736.5 ms ✓ StatsFuns 6195.3 ms ✓ ForwardDiff 1416.1 ms ✓ Graphene_jll 1330.3 ms ✓ Xorg_libXfixes_jll 1319.8 ms ✓ Xorg_libXrender_jll 1359.1 ms ✓ Xorg_libXext_jll 1357.1 ms ✓ Xorg_libxkbfile_jll 1443.3 ms ✓ gdk_pixbuf_jll 4112.3 ms ✓ DocumenterTools 4696.4 ms ✓ StatsModels 9364.9 ms ✓ Distributions 1572.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1305.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 72201.8 ms ✓ MathOptInterface 1349.3 ms ✓ Xorg_libXdamage_jll 1380.6 ms ✓ Xorg_libXcursor_jll 1345.3 ms ✓ Xorg_libXrandr_jll 1376.0 ms ✓ Xorg_libXinerama_jll 1436.2 ms ✓ Xorg_libXi_jll 1397.7 ms ✓ Cairo_jll 1897.8 ms ✓ Libglvnd_jll 2544.4 ms ✓ Xorg_xkbcomp_jll 5956.2 ms ✓ GLM 3395.5 ms ✓ Distributions → DistributionsTestExt 1740.6 ms ✓ NLSolversBase 5974.6 ms ✓ NLopt 1373.4 ms ✓ HarfBuzz_jll 1338.3 ms ✓ Libepoxy_jll 1158.2 ms ✓ Xorg_xkeyboard_config_jll 2171.8 ms ✓ LineSearches 26555.2 ms ✓ PhyloNetworks 1468.4 ms ✓ Pango_jll 1439.0 ms ✓ xkbcommon_jll 6857.2 ms ✓ Optim 2592.9 ms ✓ Cairo 1519.6 ms ✓ Librsvg_jll 1616.4 ms ✓ GTK4_jll 6009.9 ms ✓ Optim → OptimMOIExt 47589.4 ms ✓ Gtk4  (julia:876): Gtk-WARNING **: 01:37:11.715: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 24508.6 ms ✓ GtkObservables  (julia:885): Gtk-WARNING **: 01:37:44.633: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 17284.6 ms ✓ ProfileView 21028.4 ms ✓ PhyNEST 210 dependencies successfully precompiled in 812 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ GtkObservables │ (julia:876): Gtk-WARNING **: 01:37:11.715: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ ProfileView │ (julia:885): Gtk-WARNING **: 01:37:44.633: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 824.35s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_pulTp4/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [429524aa] Optim v1.13.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.2 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_pulTp4/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.6 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.18.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.2 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.11 [8710efd8] GtkObservables v2.2.1 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.49.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [c46f51b8] ProfileView v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.7 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.53.0+0 [7746bdde] Glib_jll v2.86.2+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.5s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.2s Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:55 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(8.405299010880169, 8.6842; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:55 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:58 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(3.1155924148703718, 2.667; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:58 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:59 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(4.759244866112028, 4.3154; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:59 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:60 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(9.17987750266038, 8.6842; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:60 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:64 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(4.086217971263376, 4.3154; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:64 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:65 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(8.178678634605268, 8.6842; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:65 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:68 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(2.164437561775859, 2.667; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:68 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:69 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(4.061698375257468, 4.3154; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:69 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:74 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(3.8925981496672213, 4.3154; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:74 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Test Summary: | Pass Fail Total Time Testing Method-of-moment estimates of speciation times | 1491 9 1500 4.6s RNG of the outermost testset: Random.Xoshiro(0x62f462962d387bbf, 0x952422dd12fb548b, 0x7df83f1cdab527f9, 0x13b01a08eac493f3, 0x220abcfc17144ce2) ERROR: LoadError: Some tests did not pass: 1491 passed, 9 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:40 in expression starting at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/runtests.jl:11 Testing failed after 52.76s ERROR: LoadError: Package PhyNEST errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 966.3s: package has test failures