Package evaluation to test MonotoneDecomposition on Julia 1.14.0-DEV.1674 (5735163b34*) started at 2026-02-06T02:54:15.161 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.94s ################################################################################ # Installation # Installing MonotoneDecomposition... Resolving package versions... Installed Conda ─────────── v1.10.3 Installed MonotoneSplines ─ v0.1.3 Installed RCall ─────────── v0.13.18 Installed Gurobi ────────── v0.11.5 Updating `~/.julia/environments/v1.14/Project.toml` [985e57c0] + MonotoneDecomposition v0.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [dce04be8] + ArgCheck v2.5.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 [fbb218c0] + BSON v0.3.9 [198e06fe] + BangBang v0.4.7 [9718e550] + Baselet v0.1.1 [6e4b80f9] + BenchmarkTools v1.6.3 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 ⌅ [324d7699] + CategoricalArrays v0.10.7 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes 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PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ──────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall ──────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3084689b18f9e5e817a6ce9a83a7654d8ad0f2f6/build.log` Installation failed after 71.95s ERROR: LoadError: Error building `RCall`: PREFIX=/home/pkgeval/.julia/conda/3/x86_64 Unpacking bootstrapper... Unpacking payload... Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2 Extracting ca-certificates-2025.11.12-hbd8a1cb_0.conda Extracting libgomp-15.2.0-he0feb66_15.conda Extracting nlohmann_json-abi-3.12.0-h0f90c79_1.conda Extracting pybind11-abi-11-hc364b38_1.conda Extracting python_abi-3.12-8_cp312.conda Extracting tzdata-2025b-h78e105d_0.conda Extracting _openmp_mutex-4.5-2_gnu.tar.bz2 Extracting libgcc-15.2.0-he0feb66_15.conda Extracting bzip2-1.0.8-hda65f42_8.conda Extracting c-ares-1.34.5-hb9d3cd8_0.conda Extracting keyutils-1.6.3-hb9d3cd8_0.conda Extracting libexpat-2.7.3-hecca717_0.conda Extracting libffi-3.5.2-h9ec8514_0.conda Extracting libgcc-ng-15.2.0-h69a702a_15.conda Extracting libiconv-1.18-h3b78370_2.conda Extracting liblzma-5.8.1-hb9d3cd8_2.conda Extracting libnsl-2.0.1-hb9d3cd8_1.conda Extracting libstdcxx-15.2.0-h934c35e_15.conda Extracting libuuid-2.41.2-h5347b49_1.conda Extracting libzlib-1.3.1-hb9d3cd8_2.conda Extracting lzo-2.10-h280c20c_1002.conda Extracting ncurses-6.5-h2d0b736_3.conda Extracting openssl-3.6.0-h26f9b46_0.conda Extracting reproc-14.2.5.post0-hb9d3cd8_0.conda Extracting cpp-expected-1.3.1-h171cf75_0.conda Extracting fmt-12.0.0-h2b0788b_0.conda Extracting libedit-3.1.20250104-pl5321h7949ede_0.conda Extracting libev-4.33-hd590300_2.conda Extracting libsolv-0.7.35-h9463b59_0.conda Extracting libsqlite-3.51.1-h0c1763c_0.conda Extracting libssh2-1.11.1-hcf80075_0.conda Extracting libstdcxx-ng-15.2.0-hdf11a46_15.conda Extracting libxcrypt-4.4.36-hd590300_1.conda Extracting libxml2-16-2.15.1-hf2a90c1_0.conda Extracting lz4-c-1.10.0-h5888daf_1.conda Extracting readline-8.2-h8c095d6_2.conda Extracting reproc-cpp-14.2.5.post0-h5888daf_0.conda Extracting simdjson-4.2.2-hb700be7_0.conda Extracting tk-8.6.13-noxft_ha0e22de_103.conda Extracting yaml-cpp-0.8.0-h3f2d84a_0.conda Extracting zstd-1.5.7-hb78ec9c_6.conda Extracting krb5-1.21.3-h659f571_0.conda Extracting ld_impl_linux-64-2.45-default_hbd61a6d_104.conda Extracting libnghttp2-1.67.0-had1ee68_0.conda Extracting libxml2-2.15.1-h031cc0b_0.conda Extracting libarchive-3.8.2-gpl_h7be2006_100.conda Extracting libcurl-8.17.0-h4e3cde8_0.conda Extracting python-3.12.12-hd63d673_1_cpython.conda Extracting libmamba-2.4.0-hed7d790_1.conda Extracting menuinst-2.4.1-py312h7900ff3_0.conda Extracting archspec-0.2.5-pyhd8ed1ab_0.conda Extracting boltons-25.0.0-pyhd8ed1ab_0.conda Extracting brotli-python-1.2.0-py312hdb49522_1.conda Extracting certifi-2025.11.12-pyhd8ed1ab_0.conda Extracting charset-normalizer-3.4.4-pyhd8ed1ab_0.conda Extracting colorama-0.4.6-pyhd8ed1ab_1.conda Extracting distro-1.9.0-pyhd8ed1ab_1.conda Extracting frozendict-2.4.7-py312h4c3975b_0.conda Extracting hpack-4.1.0-pyhd8ed1ab_0.conda Extracting hyperframe-6.1.0-pyhd8ed1ab_0.conda Extracting idna-3.11-pyhd8ed1ab_0.conda Extracting jsonpointer-3.0.0-py312h7900ff3_2.conda Extracting libmambapy-2.4.0-py312h17091a9_1.conda Extracting mamba-2.4.0-h7ae174a_1.conda Extracting msgpack-python-1.1.2-py312hd9148b4_1.conda Extracting packaging-25.0-pyh29332c3_1.conda Extracting platformdirs-4.5.0-pyhcf101f3_0.conda Extracting pluggy-1.6.0-pyhf9edf01_1.conda Extracting pycosat-0.6.6-py312h4c3975b_3.conda Extracting pycparser-2.22-pyh29332c3_1.conda Extracting pysocks-1.7.1-pyha55dd90_7.conda Extracting ruamel.yaml.clib-0.2.14-py312h4c3975b_0.conda Extracting setuptools-80.9.0-pyhff2d567_0.conda Extracting truststore-0.10.3-pyhe01879c_0.conda Extracting wheel-0.45.1-pyhd8ed1ab_1.conda Extracting cffi-2.0.0-py312h460c074_1.conda Extracting h2-4.3.0-pyhcf101f3_0.conda Extracting jsonpatch-1.33-pyhd8ed1ab_1.conda Extracting pip-25.3-pyh8b19718_0.conda Extracting ruamel.yaml-0.18.16-py312h4c3975b_0.conda Extracting tqdm-4.67.1-pyhd8ed1ab_1.conda Extracting zstandard-0.25.0-py312h5253ce2_1.conda Extracting conda-package-streaming-0.12.0-pyhd8ed1ab_0.conda Extracting urllib3-2.5.0-pyhd8ed1ab_0.conda Extracting requests-2.32.5-pyhd8ed1ab_0.conda Extracting conda-package-handling-2.4.0-pyh7900ff3_2.conda Extracting conda-25.11.0-py312h7900ff3_0.conda Extracting conda-libmamba-solver-25.11.0-pyhd8ed1ab_0.conda Installing base environment... Transaction Prefix: /home/pkgeval/.julia/conda/3/x86_64 Updating specs: - _libgcc_mutex==0.1=conda_forge - ca-certificates==2025.11.12=hbd8a1cb_0 - libgomp==15.2.0=he0feb66_15 - nlohmann_json-abi==3.12.0=h0f90c79_1 - pybind11-abi==11=hc364b38_1 - python_abi==3.12=8_cp312 - tzdata==2025b=h78e105d_0 - _openmp_mutex==4.5=2_gnu - libgcc==15.2.0=he0feb66_15 - bzip2==1.0.8=hda65f42_8 - c-ares==1.34.5=hb9d3cd8_0 - keyutils==1.6.3=hb9d3cd8_0 - libexpat==2.7.3=hecca717_0 - libffi==3.5.2=h9ec8514_0 - libgcc-ng==15.2.0=h69a702a_15 - libiconv==1.18=h3b78370_2 - liblzma==5.8.1=hb9d3cd8_2 - libnsl==2.0.1=hb9d3cd8_1 - libstdcxx==15.2.0=h934c35e_15 - libuuid==2.41.2=h5347b49_1 - libzlib==1.3.1=hb9d3cd8_2 - lzo==2.10=h280c20c_1002 - ncurses==6.5=h2d0b736_3 - openssl==3.6.0=h26f9b46_0 - reproc==14.2.5.post0=hb9d3cd8_0 - cpp-expected==1.3.1=h171cf75_0 - fmt==12.0.0=h2b0788b_0 - libedit==3.1.20250104=pl5321h7949ede_0 - libev==4.33=hd590300_2 - libsolv==0.7.35=h9463b59_0 - libsqlite==3.51.1=h0c1763c_0 - libssh2==1.11.1=hcf80075_0 - libstdcxx-ng==15.2.0=hdf11a46_15 - libxcrypt==4.4.36=hd590300_1 - libxml2-16==2.15.1=hf2a90c1_0 - lz4-c==1.10.0=h5888daf_1 - readline==8.2=h8c095d6_2 - reproc-cpp==14.2.5.post0=h5888daf_0 - simdjson==4.2.2=hb700be7_0 - tk==8.6.13=noxft_ha0e22de_103 - yaml-cpp==0.8.0=h3f2d84a_0 - zstd==1.5.7=hb78ec9c_6 - krb5==1.21.3=h659f571_0 - ld_impl_linux-64==2.45=default_hbd61a6d_104 - libnghttp2==1.67.0=had1ee68_0 - libxml2==2.15.1=h031cc0b_0 - libarchive==3.8.2=gpl_h7be2006_100 - libcurl==8.17.0=h4e3cde8_0 - python==3.12.12=hd63d673_1_cpython - libmamba==2.4.0=hed7d790_1 - menuinst==2.4.1=py312h7900ff3_0 - archspec==0.2.5=pyhd8ed1ab_0 - boltons==25.0.0=pyhd8ed1ab_0 - brotli-python==1.2.0=py312hdb49522_1 - certifi==2025.11.12=pyhd8ed1ab_0 - charset-normalizer==3.4.4=pyhd8ed1ab_0 - colorama==0.4.6=pyhd8ed1ab_1 - distro==1.9.0=pyhd8ed1ab_1 - frozendict==2.4.7=py312h4c3975b_0 - hpack==4.1.0=pyhd8ed1ab_0 - hyperframe==6.1.0=pyhd8ed1ab_0 - idna==3.11=pyhd8ed1ab_0 - jsonpointer==3.0.0=py312h7900ff3_2 - libmambapy==2.4.0=py312h17091a9_1 - mamba==2.4.0=h7ae174a_1 - msgpack-python==1.1.2=py312hd9148b4_1 - packaging==25.0=pyh29332c3_1 - platformdirs==4.5.0=pyhcf101f3_0 - pluggy==1.6.0=pyhf9edf01_1 - pycosat==0.6.6=py312h4c3975b_3 - pycparser==2.22=pyh29332c3_1 - pysocks==1.7.1=pyha55dd90_7 - ruamel.yaml.clib==0.2.14=py312h4c3975b_0 - setuptools==80.9.0=pyhff2d567_0 - truststore==0.10.3=pyhe01879c_0 - wheel==0.45.1=pyhd8ed1ab_1 - cffi==2.0.0=py312h460c074_1 - h2==4.3.0=pyhcf101f3_0 - jsonpatch==1.33=pyhd8ed1ab_1 - pip==25.3=pyh8b19718_0 - ruamel.yaml==0.18.16=py312h4c3975b_0 - tqdm==4.67.1=pyhd8ed1ab_1 - zstandard==0.25.0=py312h5253ce2_1 - conda-package-streaming==0.12.0=pyhd8ed1ab_0 - urllib3==2.5.0=pyhd8ed1ab_0 - requests==2.32.5=pyhd8ed1ab_0 - conda-package-handling==2.4.0=pyh7900ff3_2 - conda==25.11.0=py312h7900ff3_0 - conda-libmamba-solver==25.11.0=pyhd8ed1ab_0 Package Version Build Channel Size ─────────────────────────────────────────────────────────────────────────────────────── Install: ─────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge + _openmp_mutex 4.5 2_gnu conda-forge + archspec 0.2.5 pyhd8ed1ab_0 conda-forge + boltons 25.0.0 pyhd8ed1ab_0 conda-forge + brotli-python 1.2.0 py312hdb49522_1 conda-forge + bzip2 1.0.8 hda65f42_8 conda-forge + c-ares 1.34.5 hb9d3cd8_0 conda-forge + ca-certificates 2025.11.12 hbd8a1cb_0 conda-forge + certifi 2025.11.12 pyhd8ed1ab_0 conda-forge + cffi 2.0.0 py312h460c074_1 conda-forge + charset-normalizer 3.4.4 pyhd8ed1ab_0 conda-forge + colorama 0.4.6 pyhd8ed1ab_1 conda-forge + conda 25.11.0 py312h7900ff3_0 conda-forge + conda-libmamba-solver 25.11.0 pyhd8ed1ab_0 conda-forge + conda-package-handling 2.4.0 pyh7900ff3_2 conda-forge + conda-package-streaming 0.12.0 pyhd8ed1ab_0 conda-forge + cpp-expected 1.3.1 h171cf75_0 conda-forge + distro 1.9.0 pyhd8ed1ab_1 conda-forge + fmt 12.0.0 h2b0788b_0 conda-forge + frozendict 2.4.7 py312h4c3975b_0 conda-forge + h2 4.3.0 pyhcf101f3_0 conda-forge + hpack 4.1.0 pyhd8ed1ab_0 conda-forge + hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge + idna 3.11 pyhd8ed1ab_0 conda-forge + jsonpatch 1.33 pyhd8ed1ab_1 conda-forge + jsonpointer 3.0.0 py312h7900ff3_2 conda-forge + keyutils 1.6.3 hb9d3cd8_0 conda-forge + krb5 1.21.3 h659f571_0 conda-forge + ld_impl_linux-64 2.45 default_hbd61a6d_104 conda-forge + libarchive 3.8.2 gpl_h7be2006_100 conda-forge + libcurl 8.17.0 h4e3cde8_0 conda-forge + libedit 3.1.20250104 pl5321h7949ede_0 conda-forge + libev 4.33 hd590300_2 conda-forge + libexpat 2.7.3 hecca717_0 conda-forge + libffi 3.5.2 h9ec8514_0 conda-forge + libgcc 15.2.0 he0feb66_15 conda-forge + libgcc-ng 15.2.0 h69a702a_15 conda-forge + libgomp 15.2.0 he0feb66_15 conda-forge + libiconv 1.18 h3b78370_2 conda-forge + liblzma 5.8.1 hb9d3cd8_2 conda-forge + libmamba 2.4.0 hed7d790_1 conda-forge + libmambapy 2.4.0 py312h17091a9_1 conda-forge + libnghttp2 1.67.0 had1ee68_0 conda-forge + libnsl 2.0.1 hb9d3cd8_1 conda-forge + libsolv 0.7.35 h9463b59_0 conda-forge + libsqlite 3.51.1 h0c1763c_0 conda-forge + libssh2 1.11.1 hcf80075_0 conda-forge + libstdcxx 15.2.0 h934c35e_15 conda-forge + libstdcxx-ng 15.2.0 hdf11a46_15 conda-forge + libuuid 2.41.2 h5347b49_1 conda-forge + libxcrypt 4.4.36 hd590300_1 conda-forge + libxml2 2.15.1 h031cc0b_0 conda-forge + libxml2-16 2.15.1 hf2a90c1_0 conda-forge + libzlib 1.3.1 hb9d3cd8_2 conda-forge + lz4-c 1.10.0 h5888daf_1 conda-forge + lzo 2.10 h280c20c_1002 conda-forge + mamba 2.4.0 h7ae174a_1 conda-forge + menuinst 2.4.1 py312h7900ff3_0 conda-forge + msgpack-python 1.1.2 py312hd9148b4_1 conda-forge + ncurses 6.5 h2d0b736_3 conda-forge + nlohmann_json-abi 3.12.0 h0f90c79_1 conda-forge + openssl 3.6.0 h26f9b46_0 conda-forge + packaging 25.0 pyh29332c3_1 conda-forge + pip 25.3 pyh8b19718_0 conda-forge + platformdirs 4.5.0 pyhcf101f3_0 conda-forge + pluggy 1.6.0 pyhf9edf01_1 conda-forge + pybind11-abi 11 hc364b38_1 conda-forge + pycosat 0.6.6 py312h4c3975b_3 conda-forge + pycparser 2.22 pyh29332c3_1 conda-forge + pysocks 1.7.1 pyha55dd90_7 conda-forge + python 3.12.12 hd63d673_1_cpython conda-forge + python_abi 3.12 8_cp312 conda-forge + readline 8.2 h8c095d6_2 conda-forge + reproc 14.2.5.post0 hb9d3cd8_0 conda-forge + reproc-cpp 14.2.5.post0 h5888daf_0 conda-forge + requests 2.32.5 pyhd8ed1ab_0 conda-forge + ruamel.yaml 0.18.16 py312h4c3975b_0 conda-forge + ruamel.yaml.clib 0.2.14 py312h4c3975b_0 conda-forge + setuptools 80.9.0 pyhff2d567_0 conda-forge + simdjson 4.2.2 hb700be7_0 conda-forge + tk 8.6.13 noxft_ha0e22de_103 conda-forge + tqdm 4.67.1 pyhd8ed1ab_1 conda-forge + truststore 0.10.3 pyhe01879c_0 conda-forge + tzdata 2025b h78e105d_0 conda-forge + urllib3 2.5.0 pyhd8ed1ab_0 conda-forge + wheel 0.45.1 pyhd8ed1ab_1 conda-forge + yaml-cpp 0.8.0 h3f2d84a_0 conda-forge + zstandard 0.25.0 py312h5253ce2_1 conda-forge + zstd 1.5.7 hb78ec9c_6 conda-forge Summary: Install: 89 packages Total download: 0 B ─────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking _libgcc_mutex-0.1-conda_forge Linking ca-certificates-2025.11.12-hbd8a1cb_0 Linking libgomp-15.2.0-he0feb66_15 Linking nlohmann_json-abi-3.12.0-h0f90c79_1 Linking pybind11-abi-11-hc364b38_1 Linking python_abi-3.12-8_cp312 Linking tzdata-2025b-h78e105d_0 Linking _openmp_mutex-4.5-2_gnu Linking libgcc-15.2.0-he0feb66_15 Linking bzip2-1.0.8-hda65f42_8 Linking c-ares-1.34.5-hb9d3cd8_0 Linking keyutils-1.6.3-hb9d3cd8_0 Linking libexpat-2.7.3-hecca717_0 Linking libffi-3.5.2-h9ec8514_0 Linking libgcc-ng-15.2.0-h69a702a_15 Linking libiconv-1.18-h3b78370_2 Linking liblzma-5.8.1-hb9d3cd8_2 Linking libnsl-2.0.1-hb9d3cd8_1 Linking libstdcxx-15.2.0-h934c35e_15 Linking libuuid-2.41.2-h5347b49_1 Linking libzlib-1.3.1-hb9d3cd8_2 Linking lzo-2.10-h280c20c_1002 Linking ncurses-6.5-h2d0b736_3 Linking openssl-3.6.0-h26f9b46_0 Linking reproc-14.2.5.post0-hb9d3cd8_0 Linking cpp-expected-1.3.1-h171cf75_0 Linking fmt-12.0.0-h2b0788b_0 Linking libedit-3.1.20250104-pl5321h7949ede_0 Linking libev-4.33-hd590300_2 Linking libsolv-0.7.35-h9463b59_0 Linking libsqlite-3.51.1-h0c1763c_0 Linking libssh2-1.11.1-hcf80075_0 Linking libstdcxx-ng-15.2.0-hdf11a46_15 Linking libxcrypt-4.4.36-hd590300_1 Linking libxml2-16-2.15.1-hf2a90c1_0 Linking lz4-c-1.10.0-h5888daf_1 Linking readline-8.2-h8c095d6_2 Linking reproc-cpp-14.2.5.post0-h5888daf_0 Linking simdjson-4.2.2-hb700be7_0 Linking tk-8.6.13-noxft_ha0e22de_103 Linking yaml-cpp-0.8.0-h3f2d84a_0 Linking zstd-1.5.7-hb78ec9c_6 Linking krb5-1.21.3-h659f571_0 Linking ld_impl_linux-64-2.45-default_hbd61a6d_104 Linking libnghttp2-1.67.0-had1ee68_0 Linking libxml2-2.15.1-h031cc0b_0 Linking libarchive-3.8.2-gpl_h7be2006_100 Linking libcurl-8.17.0-h4e3cde8_0 Linking python-3.12.12-hd63d673_1_cpython Linking libmamba-2.4.0-hed7d790_1 Linking menuinst-2.4.1-py312h7900ff3_0 Linking archspec-0.2.5-pyhd8ed1ab_0 Linking boltons-25.0.0-pyhd8ed1ab_0 Linking brotli-python-1.2.0-py312hdb49522_1 Linking certifi-2025.11.12-pyhd8ed1ab_0 Linking charset-normalizer-3.4.4-pyhd8ed1ab_0 Linking colorama-0.4.6-pyhd8ed1ab_1 Linking distro-1.9.0-pyhd8ed1ab_1 Linking frozendict-2.4.7-py312h4c3975b_0 Linking hpack-4.1.0-pyhd8ed1ab_0 Linking hyperframe-6.1.0-pyhd8ed1ab_0 Linking idna-3.11-pyhd8ed1ab_0 Linking jsonpointer-3.0.0-py312h7900ff3_2 Linking libmambapy-2.4.0-py312h17091a9_1 Linking mamba-2.4.0-h7ae174a_1 Linking msgpack-python-1.1.2-py312hd9148b4_1 Linking packaging-25.0-pyh29332c3_1 Linking platformdirs-4.5.0-pyhcf101f3_0 Linking pluggy-1.6.0-pyhf9edf01_1 Linking pycosat-0.6.6-py312h4c3975b_3 Linking pycparser-2.22-pyh29332c3_1 Linking pysocks-1.7.1-pyha55dd90_7 Linking ruamel.yaml.clib-0.2.14-py312h4c3975b_0 Linking setuptools-80.9.0-pyhff2d567_0 Linking truststore-0.10.3-pyhe01879c_0 Linking wheel-0.45.1-pyhd8ed1ab_1 Linking cffi-2.0.0-py312h460c074_1 Linking h2-4.3.0-pyhcf101f3_0 Linking jsonpatch-1.33-pyhd8ed1ab_1 Linking pip-25.3-pyh8b19718_0 Linking ruamel.yaml-0.18.16-py312h4c3975b_0 Linking tqdm-4.67.1-pyhd8ed1ab_1 Linking zstandard-0.25.0-py312h5253ce2_1 Linking conda-package-streaming-0.12.0-pyhd8ed1ab_0 Linking urllib3-2.5.0-pyhd8ed1ab_0 Linking requests-2.32.5-pyhd8ed1ab_0 Linking conda-package-handling-2.4.0-pyh7900ff3_2 Linking conda-25.11.0-py312h7900ff3_0 Linking conda-libmamba-solver-25.11.0-pyhd8ed1ab_0 Transaction finished installation finished. Retrieving notices: ...working... done Channels: - r - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - r-base[version='>=3.4.0,<5'] The following packages will be downloaded: package | build ---------------------------|----------------- _r-mutex-1.0.0 | anacondar_1 2 KB r binutils_impl_linux-64-2.45|default_hfdba357_104 3.6 MB conda-forge bwidget-1.10.1 | ha770c72_1 127 KB conda-forge ca-certificates-2026.1.4 | hbd8a1cb_0 143 KB conda-forge cairo-1.18.4 | h3394656_0 955 KB conda-forge certifi-2026.1.4 | pyhd8ed1ab_0 147 KB conda-forge curl-8.17.0 | h4e3cde8_0 182 KB conda-forge font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge font-ttf-ubuntu-0.83 | h77eed37_3 1.5 MB conda-forge fontconfig-2.15.0 | h7e30c49_1 259 KB conda-forge fonts-conda-ecosystem-1 | 0 4 KB conda-forge fonts-conda-forge-1 | hc364b38_1 4 KB conda-forge freetype-2.14.1 | ha770c72_0 169 KB conda-forge fribidi-1.0.16 | hb03c661_0 60 KB conda-forge gcc_impl_linux-64-15.2.0 | h56f5909_17 75.1 MB conda-forge gfortran_impl_linux-64-15.2.0| h281d09f_17 19.1 MB conda-forge graphite2-1.3.14 | hecca717_2 97 KB conda-forge gsl-2.7 | he838d99_0 3.2 MB conda-forge gxx_impl_linux-64-15.2.0 | hda75c37_17 15.6 MB conda-forge harfbuzz-12.2.0 | h15599e2_0 2.3 MB conda-forge icu-75.1 | he02047a_0 11.6 MB conda-forge kernel-headers_linux-64-5.14.0| he073ed8_3 1.3 MB conda-forge lerc-4.0.0 | h0aef613_1 258 KB conda-forge libblas-3.11.0 |5_h4a7cf45_openblas 18 KB conda-forge libcblas-3.11.0 |5_h0358290_openblas 18 KB conda-forge libdeflate-1.25 | h17f619e_0 72 KB conda-forge libfreetype-2.14.1 | ha770c72_0 7 KB conda-forge libfreetype6-2.14.1 | h73754d4_0 378 KB conda-forge libgcc-devel_linux-64-15.2.0| hcc6f6b0_117 2.9 MB conda-forge libgfortran-15.2.0 | h69a702a_17 27 KB conda-forge libgfortran-ng-15.2.0 | h69a702a_17 27 KB conda-forge libgfortran5-15.2.0 | h68bc16d_17 2.4 MB conda-forge libglib-2.86.3 | h6548e54_0 3.8 MB conda-forge libjpeg-turbo-3.1.2 | hb03c661_0 619 KB conda-forge liblapack-3.11.0 |5_h47877c9_openblas 18 KB conda-forge libopenblas-0.3.30 |pthreads_h94d23a6_4 5.7 MB conda-forge libpng-1.6.54 | h421ea60_0 310 KB conda-forge libsanitizer-15.2.0 | h90f66d4_17 7.8 MB conda-forge libstdcxx-devel_linux-64-15.2.0| hd446a21_117 19.8 MB conda-forge libtiff-4.7.1 | h9d88235_1 425 KB conda-forge libuuid-2.41.3 | h5347b49_0 39 KB conda-forge libwebp-base-1.6.0 | hd42ef1d_0 419 KB conda-forge libxcb-1.17.0 | h8a09558_0 387 KB conda-forge libxml2-2.15.1 | h26afc86_0 44 KB conda-forge libxml2-16-2.15.1 | ha9997c6_0 543 KB conda-forge make-4.4.1 | hb9d3cd8_2 501 KB conda-forge openssl-3.6.1 | h35e630c_1 3.0 MB conda-forge pango-1.56.4 | hadf4263_0 445 KB conda-forge pcre2-10.47 | haa7fec5_0 1.2 MB conda-forge pixman-0.46.4 | h54a6638_1 440 KB conda-forge pthread-stubs-0.4 | hb9d3cd8_1002 8 KB conda-forge r-base-4.5.2 | h835929b_3 26.1 MB conda-forge readline-8.3 | h853b02a_0 337 KB conda-forge sed-4.9 | h6688a6e_0 224 KB conda-forge sysroot_linux-64-2.34 | h087de78_3 38.9 MB conda-forge tktable-2.10 | h8d826fa_7 90 KB conda-forge xorg-libice-1.1.2 | hb9d3cd8_0 57 KB conda-forge xorg-libsm-1.2.6 | he73a12e_0 27 KB conda-forge xorg-libx11-1.8.12 | h4f16b4b_0 816 KB conda-forge xorg-libxau-1.0.12 | hb03c661_1 15 KB conda-forge xorg-libxdmcp-1.1.5 | hb03c661_1 20 KB conda-forge xorg-libxext-1.3.7 | hb03c661_0 49 KB conda-forge xorg-libxrender-0.9.12 | hb9d3cd8_0 32 KB conda-forge xorg-libxt-1.3.1 | hb9d3cd8_0 371 KB conda-forge ------------------------------------------------------------ Total: 254.9 MB The following NEW packages will be INSTALLED: _r-mutex r/linux-64::_r-mutex-1.0.0-anacondar_1 binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.45-default_hfdba357_104 bwidget conda-forge/linux-64::bwidget-1.10.1-ha770c72_1 cairo conda-forge/linux-64::cairo-1.18.4-h3394656_0 curl conda-forge/linux-64::curl-8.17.0-h4e3cde8_0 font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-h77eed37_3 fontconfig conda-forge/linux-64::fontconfig-2.15.0-h7e30c49_1 fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-hc364b38_1 freetype conda-forge/linux-64::freetype-2.14.1-ha770c72_0 fribidi conda-forge/linux-64::fribidi-1.0.16-hb03c661_0 gcc_impl_linux-64 conda-forge/linux-64::gcc_impl_linux-64-15.2.0-h56f5909_17 gfortran_impl_lin~ conda-forge/linux-64::gfortran_impl_linux-64-15.2.0-h281d09f_17 graphite2 conda-forge/linux-64::graphite2-1.3.14-hecca717_2 gsl conda-forge/linux-64::gsl-2.7-he838d99_0 gxx_impl_linux-64 conda-forge/linux-64::gxx_impl_linux-64-15.2.0-hda75c37_17 harfbuzz conda-forge/linux-64::harfbuzz-12.2.0-h15599e2_0 icu conda-forge/linux-64::icu-75.1-he02047a_0 kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-5.14.0-he073ed8_3 lerc conda-forge/linux-64::lerc-4.0.0-h0aef613_1 libblas conda-forge/linux-64::libblas-3.11.0-5_h4a7cf45_openblas libcblas conda-forge/linux-64::libcblas-3.11.0-5_h0358290_openblas libdeflate conda-forge/linux-64::libdeflate-1.25-h17f619e_0 libfreetype conda-forge/linux-64::libfreetype-2.14.1-ha770c72_0 libfreetype6 conda-forge/linux-64::libfreetype6-2.14.1-h73754d4_0 libgcc-devel_linu~ conda-forge/noarch::libgcc-devel_linux-64-15.2.0-hcc6f6b0_117 libgfortran conda-forge/linux-64::libgfortran-15.2.0-h69a702a_17 libgfortran-ng conda-forge/linux-64::libgfortran-ng-15.2.0-h69a702a_17 libgfortran5 conda-forge/linux-64::libgfortran5-15.2.0-h68bc16d_17 libglib conda-forge/linux-64::libglib-2.86.3-h6548e54_0 libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.1.2-hb03c661_0 liblapack conda-forge/linux-64::liblapack-3.11.0-5_h47877c9_openblas libopenblas conda-forge/linux-64::libopenblas-0.3.30-pthreads_h94d23a6_4 libpng conda-forge/linux-64::libpng-1.6.54-h421ea60_0 libsanitizer conda-forge/linux-64::libsanitizer-15.2.0-h90f66d4_17 libstdcxx-devel_l~ conda-forge/noarch::libstdcxx-devel_linux-64-15.2.0-hd446a21_117 libtiff conda-forge/linux-64::libtiff-4.7.1-h9d88235_1 libwebp-base conda-forge/linux-64::libwebp-base-1.6.0-hd42ef1d_0 libxcb conda-forge/linux-64::libxcb-1.17.0-h8a09558_0 make conda-forge/linux-64::make-4.4.1-hb9d3cd8_2 pango conda-forge/linux-64::pango-1.56.4-hadf4263_0 pcre2 conda-forge/linux-64::pcre2-10.47-haa7fec5_0 pixman conda-forge/linux-64::pixman-0.46.4-h54a6638_1 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-hb9d3cd8_1002 r-base conda-forge/linux-64::r-base-4.5.2-h835929b_3 sed conda-forge/linux-64::sed-4.9-h6688a6e_0 sysroot_linux-64 conda-forge/noarch::sysroot_linux-64-2.34-h087de78_3 tktable conda-forge/linux-64::tktable-2.10-h8d826fa_7 xorg-libice conda-forge/linux-64::xorg-libice-1.1.2-hb9d3cd8_0 xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.6-he73a12e_0 xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.12-h4f16b4b_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.12-hb03c661_1 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.5-hb03c661_1 xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.7-hb03c661_0 xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.12-hb9d3cd8_0 xorg-libxt conda-forge/linux-64::xorg-libxt-1.3.1-hb9d3cd8_0 The following packages will be UPDATED: ca-certificates 2025.11.12-hbd8a1cb_0 --> 2026.1.4-hbd8a1cb_0 certifi 2025.11.12-pyhd8ed1ab_0 --> 2026.1.4-pyhd8ed1ab_0 libuuid 2.41.2-h5347b49_1 --> 2.41.3-h5347b49_0 openssl 3.6.0-h26f9b46_0 --> 3.6.1-h35e630c_1 readline 8.2-h8c095d6_2 --> 8.3-h853b02a_0 The following packages will be REVISED: libxml2 2.15.1-h031cc0b_0 --> 2.15.1-h26afc86_0 libxml2-16 2.15.1-hf2a90c1_0 --> 2.15.1-ha9997c6_0 ('Connection broken: IncompleteRead(78392320 bytes read, 365490 more expected)', IncompleteRead(78392320 bytes read, 365490 more expected)) ('Connection broken: IncompleteRead(78392320 bytes read, 365490 more expected)', IncompleteRead(78392320 bytes read, 365490 more expected)) [ Info: Installing R via Conda. To use a different R installation, set the "R_HOME" environment variable and re-run Pkg.build("RCall"). [ Info: Downloading miniconda installer ... [ Info: Installing miniconda ... [ Info: Running `conda config --add channels r --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml --force` in root environment [ Info: Running `conda install -q -y 'r-base>=3.4.0,<5'` in root environment ERROR: LoadError: failed process: Process(setenv(`/home/pkgeval/.julia/conda/3/x86_64/bin/conda install -q -y 'r-base>=3.4.0,<5'`,["JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_PKG_PRECOMPILE_AUTO=0", "CI=true", "OPENBLAS_NUM_THREADS=1", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "CONDARC=/home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml", "JULIA_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "JULIA_CPU_THREADS=1", "DISPLAY=:1", "PYTHONIOENCODING=UTF-8", "PKGEVAL=true", "JULIA_LOAD_PATH=@:/tmp/jl_R52q9U", "CONDA_PREFIX=/home/pkgeval/.julia/conda/3/x86_64", "LANG=C.UTF-8", "R_HOME=*"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:610 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:525 [3] run @ ./process.jl:522 [inlined] [4] runconda(args::Cmd, env::String) @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:182 [5] add(pkg::String, env::String; channel::String, satisfied_skip_solve::Bool, args::Cmd) @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:343 [6] add @ ~/.julia/packages/Conda/05AVg/src/Conda.jl:326 [inlined] [7] add(pkg::String) @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:326 [8] top-level scope @ ~/.julia/packages/RCall/gOwEW/deps/build.jl:35 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ none:8 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [13] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/RCall/gOwEW/deps/build.jl:11 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] (::Pkg.Operations.var"#147#148"{Bool, Pkg.Types.Context, String, PackageSpec, String})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1936 [3] withenv(::Pkg.Operations.var"#147#148"{Bool, Pkg.Types.Context, String, PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:265 [4] (::Pkg.Operations.var"#210#211"{Bool, Bool, Bool, Pkg.Operations.var"#147#148"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2791 [5] with_temp_env(fn::Pkg.Operations.var"#210#211"{Bool, Bool, Bool, Pkg.Operations.var"#147#148"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2693 [6] #sandbox_with_temp_env#208 @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2750 [inlined] [7] sandbox_with_temp_env @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2743 [inlined] [8] (::Pkg.Operations.var"#215#216"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#147#148"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2860 [9] mktempdir(fn::Pkg.Operations.var"#215#216"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#147#148"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:936 [10] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:932 [11] sandbox(fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override_in::Pkg.Types.Project; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2806 [12] sandbox @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2796 [inlined] [13] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1913 [14] build_versions @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1824 [inlined] [15] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2323 [16] add @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2257 [inlined] [17] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:379 [18] add(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [19] add(pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [20] add(pkg::PackageSpec) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [21] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:116 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [24] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:113 PkgEval skipped after 109.27s: package could not be installed