Package evaluation to test sparseQFCA on Julia 1.14.0-DEV.1674 (5735163b34*) started at 2026-02-04T00:05:00.821 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.09s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed MacroTools ──────────── v0.5.16 Installed DiffResults ─────────── v1.1.0 Installed DataStructures ──────── v0.18.22 Installed HiGHS_jll ───────────── v1.12.0+0 Installed ForwardDiff ─────────── v1.3.2 Installed SnoopPrecompile ─────── v1.0.3 Installed JLD2 ────────────────── v0.5.15 Installed SBML ────────────────── v1.6.0 Installed libaec_jll ──────────── v1.1.5+0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed MKL_jll ─────────────── v2024.2.0+0 Installed ConstructionBase ────── v1.6.0 Installed DelimitedFiles ──────── v1.9.1 Installed HiGHS ───────────────── v1.20.1 Installed MPICH_jll ───────────── v4.3.2+0 Installed CodecZlib ───────────── v0.7.8 Installed Clp ─────────────────── v1.3.0 Installed ExprTools ───────────── v0.1.10 Installed oneTBB_jll ──────────── v2022.0.0+1 Installed OrderedCollections ──── v1.8.1 Installed Cgl_jll ─────────────── v0.6000.900+0 Installed TranscodingStreams ──── v0.11.3 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed Cbc_jll ─────────────── v200.1000.1200+0 Installed HSL_jll ─────────────── v4.0.4+0 Installed SBMLFBCModels ───────── v1.1.1 Installed Compat ──────────────── v4.18.1 Installed Clp_jll ─────────────── v100.1700.1000+1 Installed HashArrayMappedTries ── v0.2.0 Installed MUMPS_seq_jll ───────── v500.800.100+0 Installed Statistics ──────────── v1.11.1 Installed Clarabel ────────────── v0.10.0 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed IntelOpenMP_jll ─────── v2024.2.1+0 Installed CDDLib ──────────────── v0.10.2 Installed PrecompileTools ─────── v1.3.3 Installed Colors ──────────────── v0.13.1 Installed CEnum ───────────────── v0.5.0 Installed TimerOutputs ────────── v0.5.29 Installed CommonSubexpressions ── v0.3.1 Installed CoinUtils_jll ───────── v200.1100.1200+0 Installed ASL_jll ─────────────── v0.1.3+0 Installed ConstraintTrees ─────── v1.11.0 Installed FileIO ──────────────── v1.18.0 Installed StaticArraysCore ────── v1.4.4 Installed IrrationalConstants ─── v0.2.6 Installed CodecBzip2 ──────────── v0.8.5 Installed StaticArrays ────────── v1.9.16 Installed JuMP ────────────────── v1.29.4 Installed ColorTypes ──────────── v0.12.1 Installed AbstractFBCModels ───── v1.3.0 Installed NaNMath ─────────────── v1.1.3 Installed Requires ────────────── v1.3.1 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed QDLDL ───────────────── v0.4.1 Installed GenericLinearAlgebra ── v0.3.19 Installed HDF5_jll ────────────── v1.14.6+0 Installed LogExpFunctions ─────── v0.3.29 Installed SCS ─────────────────── v2.6.0 Installed AMD ─────────────────── v0.5.3 Installed Pardiso ─────────────── v0.5.7 Installed StableRNGs ──────────── v1.0.4 Installed OpenBLAS32_jll ──────── v0.3.30+0 Installed DiffRules ───────────── v1.15.1 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed SBML_jll ────────────── v5.21.0+0 Installed Hwloc_jll ───────────── v2.12.2+0 Installed Parsers ─────────────── v2.8.3 Installed JSON ────────────────── v0.21.4 Installed ECOS_jll ────────────── v200.0.800+0 Installed Cbc ─────────────────── v1.3.0 Installed ECOS ────────────────── v1.1.3 Installed GLPK_jll ────────────── v5.0.1+1 Installed ScopedValues ────────── v1.5.0 Installed IfElse ──────────────── v0.1.1 Installed Unitful ─────────────── v1.28.0 Installed PikaParser ──────────── v0.6.1 Installed XML2_jll ────────────── v2.13.9+0 Installed Reexport ────────────── v1.2.2 Installed SpecialFunctions ────── v2.6.1 Installed MathOptIIS ──────────── v0.1.1 Installed JSONFBCModels ───────── v1.0.1 Installed MPIPreferences ──────── v0.1.11 Installed Preferences ─────────── v1.5.1 Installed FixedPointNumbers ───── v0.8.5 Installed COBREXA ─────────────── v2.9.1 Installed MutableArithmetics ──── v1.6.7 Installed BenchmarkTools ──────── v1.6.3 Installed JLLWrappers ─────────── v1.7.1 Installed Libiconv_jll ────────── v1.18.0+0 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed cddlib_jll ──────────── v0.94.14+0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed Polyhedra ───────────── v0.8.1 Installed METIS_jll ───────────── v5.1.2+1 Installed GLPK ────────────────── v1.2.1 Installed SCS_jll ─────────────── v300.200.1100+0 Installed DocStringExtensions ─── v0.9.5 Installed HDF5 ────────────────── v0.17.2 Installed Osi_jll ─────────────── v0.10800.1100+0 Installed HSL ─────────────────── v0.4.3 Installed MathOptInterface ────── v1.49.0 Installed sparseQFCA ──────────── v2.3.0 Installing 26 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact ASL 276.3 KiB Installed artifact Bzip2 503.5 KiB Installed artifact ECOS 75.2 KiB Installed artifact libaec 49.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Cbc 1.1 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact CoinUtils 811.6 KiB Installed artifact GLPK 3.1 MiB Installed artifact Cgl 656.0 KiB Installed artifact HiGHS 2.3 MiB Installed artifact XML2 2.5 MiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact MPICH 3.3 MiB Installed artifact SCS 543.6 KiB Installed artifact MUMPS_seq 8.6 MiB Installed artifact METIS 1.1 MiB Installed artifact HDF5 5.7 MiB Installed artifact Clp 1.4 MiB Installed artifact cddlib 1.0 MiB Installed artifact Osi 443.6 KiB Installed artifact Hwloc 3.5 MiB Installed artifact SBML 6.0 MiB Installed artifact HSL 1.1 MiB Updating `~/.julia/environments/v1.14/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 [9961bab8] + Cbc v1.3.0 ⌅ [61c947e1] + Clarabel v0.10.0 [e2554f3b] + Clp v1.3.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.18.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.2 [60bf3e95] + GLPK v1.2.1 [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.2 ⌅ [34c5aeac] + HSL v0.4.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.20.1 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.29.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.49.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌅ [46dd5b70] + Pardiso v0.5.7 [69de0a69] + Parsers v2.8.3 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.0 [7e506255] + ScopedValues v1.5.0 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [38041ee0] + Cbc_jll v200.1000.1200+0 [3830e938] + Cgl_jll v0.6000.900+0 ⌅ [06985876] + Clp_jll v100.1700.1000+1 [be027038] + CoinUtils_jll v200.1100.1200+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [017b0a0e] + HSL_jll v4.0.4+0 [8fd58aa0] + HiGHS_jll v1.12.0+0 [e33a78d0] + Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [d00139f3] + METIS_jll v5.1.2+1 ⌅ [856f044c] + MKL_jll v2024.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [7da25872] + Osi_jll v0.10800.1100+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Pardiso → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4b618484bf94a52f02595cd73ac8a6417f4c0c70/build.log` Installation completed after 21.21s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4360.0 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4234.9 ms ✓ MacroTools 770.0 ms ✓ Reexport 1052.7 ms ✓ Statistics 1040.9 ms ✓ ConstructionBase 1938.6 ms ✓ IrrationalConstants 904.2 ms ✓ StaticArraysCore 1150.5 ms ✓ Requires 1241.6 ms ✓ OrderedCollections 925.2 ms ✓ StableRNGs 879.7 ms ✓ HashArrayMappedTries 1082.2 ms ✓ DocStringExtensions 797.1 ms ✓ CEnum 871.5 ms ✓ ExprTools 779.3 ms ✓ IfElse 1264.0 ms ✓ TranscodingStreams 1707.4 ms ✓ AMD 1618.9 ms ✓ GenericLinearAlgebra 1022.0 ms ✓ NaNMath 1057.7 ms ✓ DelimitedFiles 31669.9 ms ✓ Unitful 1115.4 ms ✓ Compat 1104.0 ms ✓ Preferences 11640.8 ms ✓ MutableArithmetics 1732.4 ms ✓ CommonSubexpressions 3901.7 ms ✓ FixedPointNumbers 1334.7 ms ✓ Statistics → SparseArraysExt 779.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 871.9 ms ✓ DiffResults 9143.0 ms ✓ FileIO 878.5 ms ✓ ScopedValues 3868.3 ms ✓ AbstractFBCModels 1347.1 ms ✓ LogExpFunctions 1474.2 ms ✓ PikaParser 3361.0 ms ✓ TimerOutputs 945.2 ms ✓ CodecZlib 1348.4 ms ✓ QDLDL 2215.8 ms ✓ Unitful → PrintfExt 2085.4 ms ✓ Unitful → ConstructionBaseUnitfulExt 2187.8 ms ✓ Unitful → NaNMathExt 830.4 ms ✓ Compat → CompatLinearAlgebraExt 1202.4 ms ✓ JLLWrappers 1104.6 ms ✓ SnoopPrecompile 1424.4 ms ✓ MPIPreferences 902.1 ms ✓ PrecompileTools 2743.4 ms ✓ ColorTypes 4159.6 ms ✓ DataStructures 1884.2 ms ✓ METIS_jll 1790.9 ms ✓ libaec_jll 4946.7 ms ✓ IntelOpenMP_jll 1410.4 ms ✓ OpenBLAS32_jll 1387.6 ms ✓ Xorg_libpciaccess_jll 1420.1 ms ✓ Bzip2_jll 1405.8 ms ✓ LLVMOpenMP_jll 1400.5 ms ✓ GLPK_jll 1372.9 ms ✓ Libiconv_jll 4898.8 ms ✓ oneTBB_jll 1401.9 ms ✓ ECOS_jll 1427.0 ms ✓ cddlib_jll 1404.8 ms ✓ HSL_jll 1431.8 ms ✓ ASL_jll 1173.6 ms ✓ MicrosoftMPI_jll 1410.1 ms ✓ OpenSpecFun_jll 1416.2 ms ✓ CoinUtils_jll 4787.4 ms ✓ MPItrampoline_jll 12300.2 ms ✓ StaticArrays 12854.2 ms ✓ Parsers 39066.3 ms ✓ JLD2 1148.8 ms ✓ ColorTypes → StyledStringsExt 7449.2 ms ✓ Colors 3217.2 ms ✓ ConstraintTrees 1350.3 ms ✓ MUMPS_seq_jll 1377.6 ms ✓ HiGHS_jll 993.6 ms ✓ CodecBzip2 1364.5 ms ✓ SCS_jll 1387.2 ms ✓ XML2_jll  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 7698.7 ms ✓ MKL_jll 9256.5 ms ✓ HSL 4626.5 ms ✓ SpecialFunctions 1336.4 ms ✓ Osi_jll 1341.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1350.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 3547.4 ms ✓ JSON 1361.8 ms ✓ SBML_jll 1408.1 ms ✓ Hwloc_jll  Downloading artifact: MKL ERROR: LoadError: TypeError: in ccall library name, expected Symbol, got a value of type Expr Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:198  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3288  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3130  [9] include_string  @ ./loading.jl:3140 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:3 in expression starting at stdin:5 ✗ Pardiso 1283.4 ms ✓ DiffRules 1406.1 ms ✓ Clp_jll 2947.1 ms ✓ BenchmarkTools 6638.6 ms ✓ JSONFBCModels 18042.0 ms ✓ SBML 5238.3 ms ✓ MPICH_jll 4646.8 ms ✓ OpenMPI_jll 6761.6 ms ✓ ForwardDiff 1760.8 ms ✓ Cgl_jll 4520.0 ms ✓ SBMLFBCModels 5956.5 ms ✓ HDF5_jll 1848.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2400.0 ms ✓ Unitful → ForwardDiffExt 77061.5 ms ✓ MathOptInterface 1465.1 ms ✓ Cbc_jll 15114.9 ms ✓ HDF5 5764.0 ms ✓ MathOptIIS 52033.4 ms ✓ SCS 64341.8 ms ✓ JuMP 11629.3 ms ✓ Polyhedra 9155.2 ms ✓ GLPK 8590.5 ms ✓ ECOS 171812.9 ms ✓ Clarabel 27808.9 ms ✓ Clp 7935.5 ms ✓ Cbc 28980.6 ms ✓ HiGHS 16784.9 ms ✓ COBREXA 11012.5 ms ✓ Polyhedra → PolyhedraJuMPExt 7679.3 ms ✓ CDDLib 48502.6 ms ✓ sparseQFCA 114 dependencies successfully precompiled in 919 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 943.19s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_vHLRJt/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.2 [87dc4568] HiGHS v1.20.1 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [b8f27783] MathOptInterface v1.49.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.0 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vHLRJt/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.18.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.2 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.2 ⌅ [34c5aeac] HSL v0.4.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.20.1 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.49.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌅ [46dd5b70] Pardiso v0.5.7 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.0 [7e506255] ScopedValues v1.5.0 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [38041ee0] Cbc_jll v200.1000.1200+0 [3830e938] Cgl_jll v0.6000.900+0 ⌅ [06985876] Clp_jll v100.1700.1000+1 [be027038] CoinUtils_jll v200.1100.1200+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [017b0a0e] HSL_jll v4.0.4+0 [8fd58aa0] HiGHS_jll v1.12.0+0 [e33a78d0] Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [d00139f3] METIS_jll v5.1.2+1 ⌅ [856f044c] MKL_jll v2024.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.100+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [7da25872] Osi_jll v0.10800.1100+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [477f73a3] libaec_jll v1.1.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 From worker 6: terminate called after throwing an instance of 'std::system_error' From worker 6: what(): Resource temporarily unavailable From worker 6: From worker 6: [672] signal 6 (-6): Aborted From worker 6: in expression starting at none:0 From worker 6: unknown function (ip: 0x789755391ebc) at /lib/x86_64-linux-gnu/libc.so.6 From worker 6: gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 6: abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 6: __verbose_terminate_handler at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/vterminate.cc:95 From worker 6: __terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48 From worker 6: terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58 From worker 6: __cxa_throw at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98 From worker 6: __throw_system_error at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/system_error.cc:595 From worker 6: _M_start_thread at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/thread.cc:176 From worker 6: _ZN17HighsTaskExecutor10initializeEi.part.666 at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 6: _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 6: _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 6: Highs_run at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/gen/libhighs.jl:328 [inlined] From worker 6: #46 at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 [inlined] From worker 6: disable_sigint at ./c.jl:167 [inlined] From worker 6: optimize! at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 From worker 6: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Bridges/bridge_optimizer.jl:367 [inlined] From worker 6: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/MathOptInterface.jl:122 [inlined] From worker 6: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/Q3V1z/src/Utilities/cachingoptimizer.jl:370 From worker 6: unknown function (ip: 0x789716fa2d62) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4317 From worker 6: #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:609 From worker 6: optimize! at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:560 From worker 6: unknown function (ip: 0x789716f77d92) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4317 From worker 6: macro expansion at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:676 [inlined] From worker 6: #distributedReversibility_Correction##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:306 From worker 6: #pfor##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:86 From worker 6: unknown function (ip: 0x789716f313aa) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4317 From worker 6: jl_apply at /source/src/julia.h:2285 [inlined] From worker 6: jl_f_invokelatest at /source/src/builtins.c:889 From worker 6: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4317 From worker 6: jl_apply at /source/src/julia.h:2285 [inlined] From worker 6: jl_f__apply_iterate at /source/src/builtins.c:876 From worker 6: #handle_msg##0 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:283 From worker 6: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70 From worker 6: unknown function (ip: 0x789716f0754b) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4317 From worker 6: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:79 From worker 6: #schedule_call##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:88 From worker 6: unknown function (ip: 0x789716f06e6f) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4317 From worker 6: jl_apply at /source/src/julia.h:2285 [inlined] From worker 6: start_task at /source/src/task.c:1275 From worker 6: Allocations: 28446598 (Pool: 28446022; Big: 576); GC: 14 Worker 6 terminated. UNHANDLED TASK ERROR: EOFError: read end of file Stacktrace: [1] (::Base.var"#wait_locked#unsafe_read##0")(s::Sockets.TCPSocket, buf::IOBuffer, nb::Int64) @ Base ./stream.jl:976 [2] unsafe_read(s::Sockets.TCPSocket, p::Ptr{UInt8}, nb::UInt64) @ Base ./stream.jl:984 [3] unsafe_read @ ./io.jl:908 [inlined] [4] unsafe_read(s::Sockets.TCPSocket, p::Base.RefValue{NTuple{4, Int64}}, n::Int64) @ Base ./io.jl:907 [5] read! @ ./io.jl:912 [inlined] [6] deserialize_hdr_raw @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/messages.jl:167 [inlined] [7] message_handler_loop(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:172 [8] process_tcp_streams(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:133 [9] (::Distributed.var"#process_messages##0#process_messages##1"{Sockets.TCPSocket, Sockets.TCPSocket, Bool})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:121 UNHANDLED TASK ERROR: ProcessExitedException(6) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 ERROR: LoadError: TaskFailedException nested task error: ProcessExitedException(6) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}, SolverName::String, OctuplePrecision::Bool, printLevel::Int64) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:663 [4] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:594 [5] top-level scope @ ~/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [10] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 ┌ Warning: Forcibly interrupting busy workers │ exception = rmprocs: pids [2, 3, 4, 5, 7, 8] not terminated after 5.0 seconds. └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1269 ┌ Warning: rmprocs: process 1 not removed └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1065 Testing failed after 1179.61s ERROR: LoadError: Package sparseQFCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2179.78s: package tests unexpectedly errored