Package evaluation to test sparseQFCA on Julia 1.14.0-DEV.1621 (4d04bb6b3b*) started at 2026-01-28T07:25:30.070 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.09s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed DiffResults ─────────── v1.1.0 Installed MacroTools ──────────── v0.5.16 Installed HiGHS_jll ───────────── v1.12.0+0 Installed ForwardDiff ─────────── v1.3.1 Installed SnoopPrecompile ─────── v1.0.3 Installed DataStructures ──────── v0.18.22 Installed JLD2 ────────────────── v0.5.15 Installed SBML ────────────────── v1.6.0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed ConstructionBase ────── v1.6.0 Installed MPICH_jll ───────────── v4.3.2+0 Installed DelimitedFiles ──────── v1.9.1 Installed libaec_jll ──────────── v1.1.5+0 Installed HiGHS ───────────────── v1.20.1 Installed MKL_jll ─────────────── v2024.2.0+0 Installed oneTBB_jll ──────────── v2022.0.0+1 Installed CodecZlib ───────────── v0.7.8 Installed ExprTools ───────────── v0.1.10 Installed Clp ─────────────────── v1.3.0 Installed Cgl_jll ─────────────── v0.6000.900+0 Installed TranscodingStreams ──── v0.11.3 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed Cbc_jll ─────────────── v200.1000.1200+0 Installed HSL_jll ─────────────── v4.0.4+0 Installed SBMLFBCModels ───────── v1.1.1 Installed OrderedCollections ──── v1.8.1 Installed Clp_jll ─────────────── v100.1700.1000+1 Installed Compat ──────────────── v4.18.1 Installed MUMPS_seq_jll ───────── v500.800.100+0 Installed Statistics ──────────── v1.11.1 Installed CDDLib ──────────────── v0.10.2 Installed HashArrayMappedTries ── v0.2.0 Installed ConstraintTrees ─────── v1.11.0 Installed Clarabel ────────────── v0.10.0 Installed PrecompileTools ─────── v1.3.3 Installed Colors ──────────────── v0.13.1 Installed CommonSubexpressions ── v0.3.1 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed IntelOpenMP_jll ─────── v2024.2.1+0 Installed CoinUtils_jll ───────── v200.1100.1200+0 Installed CEnum ───────────────── v0.5.0 Installed TimerOutputs ────────── v0.5.29 Installed IrrationalConstants ─── v0.2.6 Installed StaticArraysCore ────── v1.4.4 Installed CodecBzip2 ──────────── v0.8.5 Installed ASL_jll ─────────────── v0.1.3+0 Installed AbstractFBCModels ───── v1.3.0 Installed StaticArrays ────────── v1.9.16 Installed JuMP ────────────────── v1.29.4 Installed NaNMath ─────────────── v1.1.3 Installed FileIO ──────────────── v1.17.1 Installed ColorTypes ──────────── v0.12.1 Installed Requires ────────────── v1.3.1 Installed JSON3 ───────────────── v1.14.3 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed QDLDL ───────────────── v0.4.1 Installed GenericLinearAlgebra ── v0.3.19 Installed LogExpFunctions ─────── v0.3.29 Installed HDF5_jll ────────────── v1.14.6+0 Installed SCS ─────────────────── v2.6.0 Installed StableRNGs ──────────── v1.0.4 Installed AMD ─────────────────── v0.5.3 Installed Pardiso ─────────────── v0.5.7 Installed DiffRules ───────────── v1.15.1 Installed JSON ────────────────── v0.21.4 Installed OpenBLAS32_jll ──────── v0.3.30+0 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed SBML_jll ────────────── v5.21.0+0 Installed Parsers ─────────────── v2.8.3 Installed Cbc ─────────────────── v1.3.0 Installed ECOS_jll ────────────── v200.0.800+0 Installed ScopedValues ────────── v1.5.0 Installed ECOS ────────────────── v1.1.3 Installed Unitful ─────────────── v1.27.0 Installed Hwloc_jll ───────────── v2.12.2+0 Installed GLPK_jll ────────────── v5.0.1+1 Installed IfElse ──────────────── v0.1.1 Installed XML2_jll ────────────── v2.13.9+0 Installed Reexport ────────────── v1.2.2 Installed PikaParser ──────────── v0.6.1 Installed SpecialFunctions ────── v2.6.1 Installed MathOptIIS ──────────── v0.1.1 Installed COBREXA ─────────────── v2.9.1 Installed JSONFBCModels ───────── v1.0.1 Installed MPIPreferences ──────── v0.1.11 Installed FixedPointNumbers ───── v0.8.5 Installed Preferences ─────────── v1.5.1 Installed BenchmarkTools ──────── v1.6.3 Installed MutableArithmetics ──── v1.6.7 Installed JLLWrappers ─────────── v1.7.1 Installed Libiconv_jll ────────── v1.18.0+0 Installed Polyhedra ───────────── v0.8.1 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed cddlib_jll ──────────── v0.94.14+0 Installed StructTypes ─────────── v1.11.0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed HDF5 ────────────────── v0.17.2 Installed METIS_jll ───────────── v5.1.2+1 Installed DocStringExtensions ─── v0.9.5 Installed SCS_jll ─────────────── v300.200.1100+0 Installed GLPK ────────────────── v1.2.1 Installed Osi_jll ─────────────── v0.10800.1100+0 Installed HSL ─────────────────── v0.4.3 Installed MathOptInterface ────── v1.48.0 Installed sparseQFCA ──────────── v2.3.0 Installing 26 artifacts Installed artifact Bzip2 503.5 KiB Installed artifact Cgl 656.0 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact HSL 1.1 MiB Installed artifact Hwloc 3.5 MiB Installed artifact ECOS 75.2 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact HDF5 5.7 MiB Installed artifact HiGHS 2.3 MiB Installed artifact SCS 543.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact libaec 49.6 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Cbc 1.1 MiB Installed artifact Clp 1.4 MiB Installed artifact cddlib 1.0 MiB Installed artifact GLPK 3.1 MiB Installed artifact ASL 276.3 KiB Installed artifact Osi 443.6 KiB Installed artifact CoinUtils 811.6 KiB Installed artifact METIS 1.1 MiB Installed artifact SBML 6.0 MiB Installed artifact XML2 2.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact MUMPS_seq 8.6 MiB Installed artifact OpenBLAS32 10.0 MiB Updating `~/.julia/environments/v1.14/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 [9961bab8] + Cbc v1.3.0 ⌅ [61c947e1] + Clarabel v0.10.0 [e2554f3b] + Clp v1.3.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.17.1 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.1 [60bf3e95] + GLPK v1.2.1 [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.2 ⌅ [34c5aeac] + HSL v0.4.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.20.1 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.29.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.48.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌅ [46dd5b70] + Pardiso v0.5.7 [69de0a69] + Parsers v2.8.3 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.0 [7e506255] + ScopedValues v1.5.0 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.27.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [38041ee0] + Cbc_jll v200.1000.1200+0 [3830e938] + Cgl_jll v0.6000.900+0 [06985876] + Clp_jll v100.1700.1000+1 [be027038] + CoinUtils_jll v200.1100.1200+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [017b0a0e] + HSL_jll v4.0.4+0 [8fd58aa0] + HiGHS_jll v1.12.0+0 [e33a78d0] + Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [d00139f3] + METIS_jll v5.1.2+1 ⌅ [856f044c] + MKL_jll v2024.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [7da25872] + Osi_jll v0.10800.1100+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Pardiso → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4b618484bf94a52f02595cd73ac8a6417f4c0c70/build.log` Installation completed after 21.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4604.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4500.0 ms ✓ MacroTools 829.3 ms ✓ Reexport 1146.7 ms ✓ Statistics 1162.1 ms ✓ ConstructionBase 2139.6 ms ✓ IrrationalConstants 1008.8 ms ✓ StaticArraysCore 1203.3 ms ✓ Requires 1261.9 ms ✓ OrderedCollections 939.2 ms ✓ StableRNGs 938.8 ms ✓ HashArrayMappedTries 1182.3 ms ✓ DocStringExtensions 879.7 ms ✓ CEnum 973.4 ms ✓ ExprTools 841.2 ms ✓ IfElse 1302.6 ms ✓ TranscodingStreams 1721.1 ms ✓ AMD 1670.3 ms ✓ GenericLinearAlgebra 1035.6 ms ✓ NaNMath 972.8 ms ✓ DelimitedFiles 34416.5 ms ✓ Unitful 2098.6 ms ✓ StructTypes 1531.8 ms ✓ Compat 1214.0 ms ✓ Preferences 11430.9 ms ✓ MutableArithmetics 1753.5 ms ✓ CommonSubexpressions 3994.4 ms ✓ FixedPointNumbers 1377.2 ms ✓ Statistics → SparseArraysExt 840.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 964.6 ms ✓ DiffResults 9416.4 ms ✓ FileIO 910.5 ms ✓ ScopedValues 3963.8 ms ✓ AbstractFBCModels 1384.4 ms ✓ LogExpFunctions 1567.2 ms ✓ PikaParser 3387.9 ms ✓ TimerOutputs 1000.6 ms ✓ CodecZlib 1356.0 ms ✓ QDLDL 2285.0 ms ✓ Unitful → PrintfExt 2086.6 ms ✓ Unitful → ConstructionBaseUnitfulExt 2218.1 ms ✓ Unitful → NaNMathExt 890.6 ms ✓ Compat → CompatLinearAlgebraExt 1271.7 ms ✓ JLLWrappers 1153.4 ms ✓ SnoopPrecompile 1472.0 ms ✓ MPIPreferences 956.0 ms ✓ PrecompileTools 2794.9 ms ✓ ColorTypes 3861.0 ms ✓ DataStructures 1620.3 ms ✓ METIS_jll 1678.6 ms ✓ libaec_jll 4798.1 ms ✓ IntelOpenMP_jll 1428.5 ms ✓ OpenBLAS32_jll 1459.9 ms ✓ Xorg_libpciaccess_jll 1447.8 ms ✓ Bzip2_jll 1486.5 ms ✓ LLVMOpenMP_jll 1567.7 ms ✓ GLPK_jll 1443.8 ms ✓ Libiconv_jll 5402.7 ms ✓ oneTBB_jll 1427.8 ms ✓ ECOS_jll 1478.7 ms ✓ cddlib_jll 1490.3 ms ✓ HSL_jll 1430.1 ms ✓ ASL_jll 1194.1 ms ✓ MicrosoftMPI_jll 1529.7 ms ✓ OpenSpecFun_jll 1582.7 ms ✓ CoinUtils_jll 4983.4 ms ✓ MPItrampoline_jll 13602.8 ms ✓ StaticArrays 16246.8 ms ✓ Parsers 43856.0 ms ✓ JLD2 1335.0 ms ✓ ColorTypes → StyledStringsExt 8138.4 ms ✓ Colors 3948.6 ms ✓ ConstraintTrees 1752.2 ms ✓ MUMPS_seq_jll 1833.7 ms ✓ HiGHS_jll 1170.7 ms ✓ CodecBzip2 1113.1 ms ✓ SCS_jll 1109.8 ms ✓ XML2_jll  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 6280.9 ms ✓ MKL_jll 9635.4 ms ✓ HSL 5044.7 ms ✓ SpecialFunctions 1461.5 ms ✓ Osi_jll 1503.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1374.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 13663.6 ms ✓ JSON3 3873.3 ms ✓ JSON 1412.4 ms ✓ SBML_jll 1389.4 ms ✓ Hwloc_jll  Downloading artifact: MKL ERROR: LoadError: TypeError: in ccall library name, expected Symbol, got a value of type Expr Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:198  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3309  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3151  [9] include_string  @ ./loading.jl:3161 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/mkl_pardiso.jl:41 in expression starting at /home/pkgeval/.julia/packages/Pardiso/z4YUw/src/Pardiso.jl:3 in expression starting at stdin:5 ✗ Pardiso 1307.0 ms ✓ DiffRules 1472.0 ms ✓ Clp_jll 3088.5 ms ✓ BenchmarkTools 6918.7 ms ✓ JSONFBCModels 17496.4 ms ✓ SBML 4975.3 ms ✓ MPICH_jll 4550.5 ms ✓ OpenMPI_jll 6690.8 ms ✓ ForwardDiff 1488.6 ms ✓ Cgl_jll 4750.4 ms ✓ SBMLFBCModels 5615.5 ms ✓ HDF5_jll 1758.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2358.7 ms ✓ Unitful → ForwardDiffExt 75238.9 ms ✓ MathOptInterface 1594.0 ms ✓ Cbc_jll 14636.7 ms ✓ HDF5 5595.5 ms ✓ MathOptIIS 51364.0 ms ✓ SCS 66025.1 ms ✓ JuMP 11912.6 ms ✓ Polyhedra 9343.9 ms ✓ GLPK 8140.5 ms ✓ ECOS 181053.7 ms ✓ Clarabel 30960.6 ms ✓ Clp 8340.8 ms ✓ Cbc 30792.0 ms ✓ HiGHS 20313.2 ms ✓ COBREXA 10899.9 ms ✓ Polyhedra → PolyhedraJuMPExt 6180.9 ms ✓ CDDLib 51110.5 ms ✓ sparseQFCA 116 dependencies successfully precompiled in 970 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 992.83s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_MzxAV8/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.2 [87dc4568] HiGHS v1.20.1 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [b8f27783] MathOptInterface v1.48.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.0 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MzxAV8/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.1 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.1 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.2 ⌅ [34c5aeac] HSL v0.4.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.20.1 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.48.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌅ [46dd5b70] Pardiso v0.5.7 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.0 [7e506255] ScopedValues v1.5.0 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.27.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [38041ee0] Cbc_jll v200.1000.1200+0 [3830e938] Cgl_jll v0.6000.900+0 [06985876] Clp_jll v100.1700.1000+1 [be027038] CoinUtils_jll v200.1100.1200+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [017b0a0e] HSL_jll v4.0.4+0 [8fd58aa0] HiGHS_jll v1.12.0+0 [e33a78d0] Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [d00139f3] METIS_jll v5.1.2+1 ⌅ [856f044c] MKL_jll v2024.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.100+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [7da25872] Osi_jll v0.10800.1100+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [477f73a3] libaec_jll v1.1.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 From worker 4: terminate called after throwing an instance of 'std::system_error' From worker 4: what(): Resource temporarily unavailable From worker 4: From worker 4: [678] signal 6 (-6): Aborted From worker 4: in expression starting at none:0 From worker 4: unknown function (ip: 0x76536e652ebc) at /lib/x86_64-linux-gnu/libc.so.6 From worker 4: gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 4: abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 4: __verbose_terminate_handler at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/vterminate.cc:95 From worker 4: __terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48 From worker 4: terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58 From worker 4: __cxa_throw at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98 From worker 4: __throw_system_error at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/system_error.cc:595 From worker 4: _M_start_thread at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/thread.cc:176 From worker 4: _ZN17HighsTaskExecutor10initializeEi.part.666 at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 4: _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 4: _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 4: Highs_run at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/gen/libhighs.jl:328 [inlined] From worker 4: #46 at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 [inlined] From worker 4: disable_sigint at ./c.jl:167 [inlined] From worker 4: optimize! at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 From worker 4: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/Bridges/bridge_optimizer.jl:367 [inlined] From worker 4: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/MathOptInterface.jl:122 [inlined] From worker 4: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/Utilities/cachingoptimizer.jl:370 From worker 4: unknown function (ip: 0x76533435e4d2) at (unknown file) From worker 4: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 4: ijl_apply_generic at /source/src/gf.c:4317 From worker 4: #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:609 From worker 4: optimize! at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:560 From worker 4: unknown function (ip: 0x76533434d7a2) at (unknown file) From worker 4: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 4: ijl_apply_generic at /source/src/gf.c:4317 From worker 4: macro expansion at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:676 [inlined] From worker 4: #distributedReversibility_Correction##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:306 From worker 4: #pfor##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:86 From worker 4: unknown function (ip: 0x76533430d99a) at (unknown file) From worker 4: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 4: ijl_apply_generic at /source/src/gf.c:4317 From worker 4: jl_apply at /source/src/julia.h:2285 [inlined] From worker 4: jl_f_invokelatest at /source/src/builtins.c:889 From worker 4: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 4: ijl_apply_generic at /source/src/gf.c:4317 From worker 4: jl_apply at /source/src/julia.h:2285 [inlined] From worker 4: jl_f__apply_iterate at /source/src/builtins.c:876 From worker 4: #handle_msg##0 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:283 From worker 4: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70 From worker 4: unknown function (ip: 0x7653342df3db) at (unknown file) From worker 4: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 4: ijl_apply_generic at /source/src/gf.c:4317 From worker 4: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:79 From worker 4: #schedule_call##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:88 From worker 4: unknown function (ip: 0x7653342defaf) at (unknown file) From worker 4: _jl_invoke at /source/src/gf.c:4120 [inlined] From worker 4: ijl_apply_generic at /source/src/gf.c:4317 From worker 4: jl_apply at /source/src/julia.h:2285 [inlined] From worker 4: start_task at /source/src/task.c:1275 From worker 4: Allocations: 28260187 (Pool: 28259603; Big: 584); GC: 14 Worker 4 terminated. UNHANDLED TASK ERROR: EOFError: read end of file Stacktrace: [1] (::Base.var"#wait_locked#unsafe_read##0")(s::Sockets.TCPSocket, buf::IOBuffer, nb::Int64) @ Base ./stream.jl:976 [2] unsafe_read(s::Sockets.TCPSocket, p::Ptr{UInt8}, nb::UInt64) @ Base ./stream.jl:984 [3] unsafe_read @ ./io.jl:906 [inlined] [4] unsafe_read(s::Sockets.TCPSocket, p::Base.RefValue{NTuple{4, Int64}}, n::Int64) @ Base ./io.jl:905 [5] read! @ ./io.jl:910 [inlined] [6] deserialize_hdr_raw @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/messages.jl:167 [inlined] [7] message_handler_loop(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:172 [8] process_tcp_streams(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:133 [9] (::Distributed.var"#process_messages##0#process_messages##1"{Sockets.TCPSocket, Sockets.TCPSocket, Bool})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:121 UNHANDLED TASK ERROR: ProcessExitedException(4) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 ERROR: LoadError: TaskFailedException nested task error: ProcessExitedException(4) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}, SolverName::String, OctuplePrecision::Bool, printLevel::Int64) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:663 [4] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:594 [5] top-level scope @ ~/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [10] _start() @ Base ./client.jl:585 in expression starting at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 ┌ Warning: Forcibly interrupting busy workers │ exception = rmprocs: pids [2, 3, 5, 6, 7, 8] not terminated after 5.0 seconds. └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1269 ┌ Warning: rmprocs: process 1 not removed └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1065 Testing failed after 1165.52s ERROR: LoadError: Package sparseQFCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2216.56s: package tests unexpectedly errored