Package evaluation to test PhyloTraits on Julia 1.14.0-DEV.1613 (8dab3f0623*) started at 2026-01-25T21:59:40.665 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.72s ################################################################################ # Installation # Installing PhyloTraits... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed FillArrays ────────────────── v1.16.0 Installed FilePathsBase ─────────────── v0.9.24 Installed InlineStrings ─────────────── v1.4.5 Installed GLM ───────────────────────── v1.9.2 Installed ConstructionBase ──────────── v1.6.0 Installed StatsModels ───────────────── v0.7.8 Installed DataStructures ────────────── v0.18.22 Installed HypergeometricFunctions ───── v0.3.28 Installed StringViews ───────────────── v1.3.7 Installed AliasTables ───────────────── v1.1.3 Installed CodecZlib ─────────────────── v0.7.8 Installed StatsBase ─────────────────── v0.34.10 Installed Functors ──────────────────── v0.5.2 Installed TranscodingStreams ────────── v0.11.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed Compat ────────────────────── v4.18.1 Installed Combinatorics ─────────────── v1.1.0 Installed OrderedCollections ────────── v1.8.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed InvertedIndices ───────────── v1.3.1 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed SentinelArrays ────────────── v1.4.9 Installed PrecompileTools ───────────── v1.3.3 Installed Twiddle ───────────────────── v1.1.2 Installed BioSymbols ────────────────── v5.2.0 Installed IrrationalConstants ───────── v0.2.6 Installed StaticArraysCore ──────────── v1.4.4 Installed StaticArrays ──────────────── v1.9.16 Installed QuadGK ────────────────────── v2.11.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed StringManipulation ────────── v0.4.2 Installed LogExpFunctions ───────────── v0.3.29 Installed Parsers ───────────────────── v2.8.3 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed StatsFuns ─────────────────── v1.5.2 Installed PhyloNetworks ─────────────── v1.3.0 Installed PrettyTables ──────────────── v3.1.2 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed FASTX ─────────────────────── v2.1.7 Installed Reexport ──────────────────── v1.2.2 Installed Distributions ─────────────── v0.25.123 Installed SpecialFunctions ──────────── v2.6.1 Installed CSV ───────────────────────── v0.10.15 Installed Missings ──────────────────── v1.2.0 Installed DataFrames ────────────────── v1.8.1 Installed Preferences ───────────────── v1.5.1 Installed WeakRefStrings ────────────── v1.4.2 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.37 Installed Automa ────────────────────── v1.1.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed NLopt ─────────────────────── v1.2.1 Installed WorkerUtilities ───────────── v1.6.1 Installed PhyloTraits ───────────────── v1.2.0 Installed DocStringExtensions ───────── v0.9.5 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed BioSequences ──────────────── v3.5.1 Installing 3 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact NLopt 322.7 KiB Updating `~/.julia/environments/v1.14/Project.toml` [bce24f4f] + PhyloTraits v1.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [c2308a5c] + FASTX v2.1.7 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [d9f16b24] + Functors v0.5.2 [38e38edf] + GLM v1.9.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [76087f3c] + NLopt v1.2.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [33ad39ac] + PhyloNetworks v1.3.0 [bce24f4f] + PhyloTraits v1.2.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [fdea26ae] + SIMD v3.7.2 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.7 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4866.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 1791.2 ms ✓ InlineStrings 808.9 ms ✓ Reexport 1123.2 ms ✓ Statistics 884.8 ms ✓ DataAPI 1134.0 ms ✓ ConstructionBase 1976.4 ms ✓ IrrationalConstants 809.8 ms ✓ DataValueInterfaces 966.3 ms ✓ StaticArraysCore 888.7 ms ✓ StatsAPI 1325.1 ms ✓ OrderedCollections 852.5 ms ✓ InvertedIndices 923.4 ms ✓ StableRNGs 850.6 ms ✓ Twiddle 917.5 ms ✓ ShiftedArrays 1108.4 ms ✓ DocStringExtensions 876.7 ms ✓ CEnum 2124.9 ms ✓ Combinatorics 1129.1 ms ✓ StringViews 988.0 ms ✓ WorkerUtilities 2220.5 ms ✓ FillArrays 841.5 ms ✓ PtrArrays 1283.8 ms ✓ TranscodingStreams 810.7 ms ✓ IteratorInterfaceExtensions 881.9 ms ✓ LaTeXStrings 1835.0 ms ✓ Crayons 1884.1 ms ✓ PDMats 2045.0 ms ✓ SentinelArrays 1162.5 ms ✓ Compat 1154.9 ms ✓ Preferences 1339.8 ms ✓ Statistics → SparseArraysExt 1001.2 ms ✓ Missings 1028.1 ms ✓ PooledArrays 815.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1334.6 ms ✓ LogExpFunctions 1535.9 ms ✓ FillArrays → FillArraysSparseArraysExt 985.6 ms ✓ FillArrays → FillArraysStatisticsExt 981.1 ms ✓ AliasTables 943.2 ms ✓ BioGenerics 998.3 ms ✓ CodecZlib 791.1 ms ✓ TableTraits 1474.9 ms ✓ FillArrays → FillArraysPDMatsExt 859.6 ms ✓ Compat → CompatLinearAlgebraExt 1197.5 ms ✓ JLLWrappers 942.2 ms ✓ PrecompileTools 1774.8 ms ✓ Tables 2123.1 ms ✓ FilePathsBase 6463.3 ms ✓ Aqua 3797.4 ms ✓ DataStructures 1303.0 ms ✓ Functors 1422.2 ms ✓ NLopt_jll 1458.1 ms ✓ Rmath_jll 1650.2 ms ✓ OpenSpecFun_jll 2565.6 ms ✓ BioSymbols 13409.4 ms ✓ StaticArrays 3205.3 ms ✓ StringManipulation 14046.5 ms ✓ SIMD 16202.8 ms ✓ Parsers 2805.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 971.3 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1505.1 ms ✓ SortingAlgorithms 2751.2 ms ✓ QuadGK 2091.1 ms ✓ NLopt 1509.9 ms ✓ Rmath 5133.2 ms ✓ SpecialFunctions 9305.1 ms ✓ BioSequences 1833.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 1449.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1582.4 ms ✓ FillArrays → FillArraysStaticArraysExt 38132.6 ms ✓ PrettyTables 17674.7 ms ✓ Automa 991.2 ms ✓ InlineStrings → ParsersExt 5022.2 ms ✓ StatsBase 2224.4 ms ✓ HypergeometricFunctions 83658.6 ms ✓ DataFrames 19207.3 ms ✓ FASTX 2566.7 ms ✓ WeakRefStrings 2066.8 ms ✓ PDMats → StatsBaseExt 2914.2 ms ✓ StatsFuns 2171.3 ms ✓ FASTX → BioSequencesExt 27635.7 ms ✓ CSV 5197.0 ms ✓ StatsModels 10093.6 ms ✓ Distributions 5204.4 ms ✓ GLM 3492.1 ms ✓ Distributions → DistributionsTestExt 18612.3 ms ✓ PhyloNetworks 17178.2 ms ✓ PhyloTraits 86 dependencies successfully precompiled in 416 seconds. 39 already precompiled. Precompilation completed after 436.71s ################################################################################ # Testing # Testing PhyloTraits Status `/tmp/jl_EGFtNb/Project.toml` [4c88cf16] Aqua v0.8.14 [3c28c6f8] BioSymbols v5.2.0 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [38e38edf] GLM v1.9.2 [33ad39ac] PhyloNetworks v1.3.0 [bce24f4f] PhyloTraits v1.2.0 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_EGFtNb/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [67c07d97] Automa v1.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [c2308a5c] FASTX v2.1.7 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [d9f16b24] Functors v0.5.2 [38e38edf] GLM v1.9.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [76087f3c] NLopt v1.2.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [33ad39ac] PhyloNetworks v1.3.0 [bce24f4f] PhyloTraits v1.2.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [fdea26ae] SIMD v3.7.2 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.7 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time PhyloTraits Code quality (Aqua.jl) | 9 9 47.9s phylolm: Caudata Dataset: Test Failed at /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:196 Expression: ≈(predict(fitLambda), [4.66893 for i = 1:197], atol = 1.0e-5, norm = (x->begin #= /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:196 =# norm(x, Inf) end)) Evaluated: [4.668934334957855, 4.668934334957855, 4.668934334957855, 4.668934334957855, 4.668934334957855, 4.668934334957855, 4.668934334957855, 4.668934334957855, 4.668934334957855, 4.668934334957855 … 4.668934334957855, 4.668934334957853, 4.6689343349578545, 4.6689343349578545, 4.6689343349578545, 4.668934334957854, 4.668934334957854, 4.668934334957857, 4.668934334957857, 4.668934334957857] ≈ [4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893 … 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893, 4.66893] (atol=1.0e-5, norm=#98) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:196 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] phylolm: Lizard Dataset: Test Failed at /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:350 Expression: ≈((confint(fitBM))[:, 1], [2.5115945339, -0.4715366529, 0.7207474097, -0.3595508202, -0.8102854443, -0.2058583178, -0.0960507369, -0.0112932922, -0.2213931131], atol = 1.0e-10, norm = (x->begin #= /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:350 =# norm(x, Inf) end)) Evaluated: [2.5115945339190517, -0.471536652860847, 0.720747409652019, -0.35955082018441126, -0.8102854443203743, -0.20585831784576886, -0.09605073685241805, -0.011293292207552541, -0.22139311313361498] ≈ [2.5115945339, -0.4715366529, 0.7207474097, -0.3595508202, -0.8102854443, -0.2058583178, -0.0960507369, -0.0112932922, -0.2213931131] (atol=1.0e-10, norm=#102) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:319 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_lm_tree.jl:350 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] Simulate test distribution (fixed root): Test Failed at /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:78 Expression: isapprox(Σ_sim, Σ_true, atol = 0.5, norm = (x->begin #= /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:78 =# maximum(abs.(x)) end)) Evaluated: isapprox([15.773382481374977 -2.900200215655022 … 0.29454795325957167 0.19456002811179074; -2.900200215655022 10.096296509091976 … 0.11665440797710325 -0.05716160033457429; … ; 0.29454795325957167 0.11665440797710325 … 9.8397564365694 1.8393988372772498; 0.19456002811179074 -0.05716160033457429 … 1.8393988372772498 12.204705596679311], [15.714651136189469 -3.097050206275684 … -0.0 0.0; -3.097050206275684 10.143096166856706 … 0.0 0.0; … ; -0.0 0.0 … 10.143096166856706 1.9540356480867267; 0.0 0.0 … 1.9540356480867267 12.50563462454052]; atol = 0.5, norm = var"#325#326"()) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:48 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:78 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] Simulate with Shifts: Test Failed at /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:206 Expression: isapprox(Σ_sim, Σ_true, norm = (x->begin #= /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:206 =# maximum(abs.(x)) end), atol = 0.5) Evaluated: isapprox([18.601461428659714 -8.4636575924147 … -0.12188335014531226 -0.022935659453475005; -8.4636575924147 4.719260658280789 … 0.04209006858132236 0.013073647505375985; … ; -0.12188335014531226 0.04209006858132236 … 3.3616418851631664 0.9574111507540022; -0.022935659453475005 0.013073647505375985 … 0.9574111507540022 0.6703154543596485], [18.4718920241616 -8.324257067251398 … -0.0 -0.0; -8.324257067251398 4.6350316421658055 … 0.0 0.0; … ; -0.0 0.0 … 3.3001425292220534 0.9261677024047169; -0.0 0.0 … 0.9261677024047169 0.6606238031442794]; norm = var"#337#338"(), atol = 0.5) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:135 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2244 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloTraits/qeg9H/test/test_simulate_mbd.jl:206 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:782 [inlined] Test Summary: | Pass Fail Total Time PhyloTraits.jl | 1005 4 1009 7m29.0s phylolm on small network | 89 89 1m02.5s Shifts and Transgressive Evolution | 46 46 37.9s No Intercept | 20 20 5.5s phylolm and ancestralreconstruction | 162 162 20.8s lambda when no signal | 10 10 2.6s Undefined branch length | 4 4 0.0s phylolm: Caudata Dataset | 52 1 53 45.1s phylolm: Lizard Dataset | 28 1 29 17.4s phylolm: within-species variation, star | 17 17 6.0s phylolm: binary tree, no withinspecies var | 20 20 1.6s phylolm: binary tree, withinspecies var | 26 26 8.2s phylolm: within-species var, network h=1 | 105 105 11.7s discrete | 213 213 2m10.0s Simulate function against fixed values | 8 8 0.8s Simulate test distribution | 90 90 1.5s Simulate with Shifts | 42 42 7.8s Simulate data and check means and dimensions | 8 8 0.8s Simulate test distribution (fixed root) | 1 1 2 1.9s Simulate test distribution (random root) | 3 3 3.2s Simulate with Shifts | 21 1 22 1.9s covariances under gaussian with coalescent | 5 5 1.2s fit σ2 under the gaussian with coalescent | 35 35 8.6s RNG of the outermost testset: Xoshiro(0x66bdcee9fc216819, 0x0411d38a92515395, 0xcedfaedfe5215e92, 0x6a93903633c67a2d, 0x675aa564972992ed) ERROR: LoadError: Some tests did not pass: 1005 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyloTraits/qeg9H/test/runtests.jl:29 Testing failed after 889.78s ERROR: LoadError: Package PhyloTraits errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3122 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2987 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:585 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 1376.93s: package has test failures