Package evaluation to test PhyNEST on Julia 1.14.0-DEV.1613 (8dab3f0623*) started at 2026-01-26T02:52:19.025 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.08s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed InlineStrings ─────────────── v1.4.5 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Functors ──────────────────── v0.3.0 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed OrderedCollections ────────── v1.8.1 Installed SentinelArrays ────────────── v1.4.9 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed Optim ─────────────────────── v1.13.3 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed NaNMath ───────────────────── v1.1.3 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Graphics ──────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed QuadGK ────────────────────── v2.11.2 Installed libsass_jll ───────────────── v3.6.6+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed EnumX ─────────────────────── v1.0.6 Installed NLSolversBase ─────────────── v7.10.0 Installed Tables ────────────────────── v1.12.1 Installed Reexport ──────────────────── v1.2.2 Installed FileIO ────────────────────── v1.17.1 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed TableTraits ───────────────── v1.0.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed Preferences ───────────────── v1.5.1 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed SortingAlgorithms ─────────── v1.2.2 Installed ADTypes ───────────────────── v1.21.0 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed DiffResults ───────────────── v1.1.0 Installed DataStructures ────────────── v0.18.22 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.16.0 Installed AbstractTrees ─────────────── v0.4.5 Installed Sass ──────────────────────── v0.2.0 Installed DelimitedFiles ────────────── v1.9.1 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed CodecZlib ─────────────────── v0.7.8 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXdamage_jll ───────── v1.1.6+0 Installed Cairo ─────────────────────── v1.1.1 Installed Observables ───────────────── v0.5.5 Installed MethodAnalysis ────────────── v1.0.0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed CEnum ─────────────────────── v0.5.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed ArrayInterface ────────────── v7.22.0 Installed CommonSubexpressions ──────── v0.3.1 Installed RoundingIntegers ──────────── v1.1.0 Installed DataValueInterfaces ───────── v1.0.0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed libpng_jll ────────────────── v1.6.54+0 Installed IrrationalConstants ───────── v0.2.6 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed BitFlags ──────────────────── v0.1.9 Installed IOCapture ─────────────────── v0.2.5 Installed PooledArrays ──────────────── v1.4.3 Installed Scratch ───────────────────── v1.3.0 Installed PDMats ────────────────────── v0.11.35 Installed Setfield ──────────────────── v1.1.2 Installed BenchmarkTools ────────────── v1.6.3 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed Graphene_jll ──────────────── v1.10.8+0 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed ForwardDiff ───────────────── v1.3.1 Installed FASTX ─────────────────────── v2.1.7 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed BioSequences ──────────────── v3.5.1 Installed DifferentiationInterface ──── v0.7.14 Installed AliasTables ───────────────── v1.1.3 Installed Combinatorics ─────────────── v1.1.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed StringViews ───────────────── v1.3.7 Installed StatsModels ───────────────── v0.6.33 Installed SIMD ──────────────────────── v3.7.2 Installed DataAPI ───────────────────── v1.16.0 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed InvertedIndices ───────────── v1.3.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed MathOptInterface ──────────── v1.48.0 Installed Colors ────────────────────── v0.13.1 Installed GtkObservables ────────────── v2.2.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed StaticArrays ──────────────── v1.9.16 Installed Twiddle ───────────────────── v1.1.2 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed ColorTypes ────────────────── v0.12.1 Installed StaticArraysCore ──────────── v1.4.4 Installed Documenter ────────────────── v0.27.25 Installed StringManipulation ────────── v0.4.2 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Glib_jll ──────────────────── v2.86.2+0 Installed Requires ──────────────────── v1.3.1 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Git_jll ───────────────────── v2.52.0+0 Installed Parsers ───────────────────── v2.8.3 Installed JSON ──────────────────────── v0.21.4 Installed PrettyTables ──────────────── v3.1.2 Installed Rmath ─────────────────────── v0.9.0 Installed FiniteDiff ────────────────── v2.29.0 Installed CSV ───────────────────────── v0.10.15 Installed BioGenerics ───────────────── v0.1.5 Installed DocumenterTools ───────────── v0.1.21 Installed Distributions ─────────────── v0.25.123 Installed PhyloNetworks ─────────────── v0.15.3 Installed StatsFuns ─────────────────── v1.5.2 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed DataFrames ────────────────── v1.8.1 Installed MutableArithmetics ────────── v1.6.7 Installed XZ_jll ────────────────────── v5.8.2+0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed StructTypes ───────────────── v1.11.0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed Pango_jll ─────────────────── v1.57.0+0 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed FilePathsBase ─────────────── v0.9.24 Installed NLopt ─────────────────────── v0.6.5 Installed GLM ───────────────────────── v1.8.3 Installed Adapt ─────────────────────── v4.4.0 Installed ConstructionBase ──────────── v1.6.0 Installed Libmount_jll ──────────────── v2.41.2+0 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed HypergeometricFunctions ───── v0.3.28 Installed FlameGraphs ───────────────── v1.1.0 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Compat ────────────────────── v4.18.1 Installed Suppressor ────────────────── v0.2.8 Installed TranscodingStreams ────────── v0.11.3 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.8.0 Installed PrecompileTools ───────────── v1.3.3 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed CodecBzip2 ────────────────── v0.8.5 Installed JSON3 ─────────────────────── v1.14.3 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed BioSymbols ────────────────── v5.2.0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed ProfileView ───────────────── v1.10.2 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed PtrArrays ─────────────────── v1.3.0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed SpecialFunctions ──────────── v2.6.1 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed IntervalSets ──────────────── v0.7.13 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed Gtk4 ──────────────────────── v0.7.11 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Gumbo ─────────────────────── v0.8.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed LineSearches ──────────────── v7.5.1 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed ANSIColoredPrinters ───────── v0.0.1 Installed Automa ────────────────────── v1.1.0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed MathProgBase ──────────────── v0.7.8 Installed PhyNEST ───────────────────── v0.1.12 Installing 60 artifacts Installed artifact Libffi 44.2 KiB Installed artifact Rmath 121.9 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact libpng 328.7 KiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact XZ 1.5 MiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Expat 283.3 KiB Installed artifact Graphene 223.2 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Cairo 2.2 MiB Installed artifact Gumbo 703.8 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Pixman 372.2 KiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact NLopt 322.7 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Graphite2 120.2 KiB Installed artifact libsass 8.9 MiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact LERC 272.9 KiB Installed artifact LZO 208.9 KiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Libtiff 2.3 MiB Installed artifact GTK4 14.1 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Librsvg 9.3 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libepoxy 504.4 KiB Installed artifact iso_codes 7.5 MiB Installed artifact Glib 7.7 MiB Installed artifact XML2 2.5 MiB Installed artifact Pango 2.0 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact Git 49.3 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.6 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.1 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.11 [8710efd8] + GtkObservables v2.2.1 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.13 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.48.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [c46f51b8] + ProfileView v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.7 [856f2bd8] + StructTypes v1.11.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 [7746bdde] + Glib_jll v2.86.2+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.54+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 30.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5133.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4468.5 ms ✓ MacroTools 1658.0 ms ✓ InlineStrings 829.2 ms ✓ Reexport 1164.1 ms ✓ ConstructionBase 2112.0 ms ✓ IrrationalConstants 819.4 ms ✓ DataValueInterfaces 919.2 ms ✓ StatsAPI 1072.1 ms ✓ Observables 893.0 ms ✓ Twiddle 1087.4 ms ✓ IntervalSets 980.1 ms ✓ CEnum 1197.3 ms ✓ Functors 2071.6 ms ✓ Combinatorics 1104.5 ms ✓ StringViews 1276.4 ms ✓ TranscodingStreams 1015.0 ms ✓ LaTeXStrings 1161.9 ms ✓ Statistics 954.5 ms ✓ StaticArraysCore 808.2 ms ✓ Suppressor 819.8 ms ✓ PtrArrays 1248.2 ms ✓ ANSIColoredPrinters 987.6 ms ✓ PositiveFactorizations 897.5 ms ✓ DataAPI 846.9 ms ✓ InvertedIndices 1007.4 ms ✓ BitFlags 911.8 ms ✓ ShiftedArrays 1135.0 ms ✓ AbstractTrees 942.4 ms ✓ EnumX 1018.5 ms ✓ WorkerUtilities 2106.8 ms ✓ FillArrays 881.9 ms ✓ IndirectArrays 879.8 ms ✓ RoundingIntegers 1277.8 ms ✓ OrderedCollections 1378.8 ms ✓ ADTypes 1131.8 ms ✓ DocStringExtensions 929.5 ms ✓ IteratorInterfaceExtensions 1865.1 ms ✓ Crayons 863.4 ms ✓ IOCapture 1008.6 ms ✓ DelimitedFiles 1027.0 ms ✓ NaNMath 1148.8 ms ✓ Requires 1793.1 ms ✓ PDMats 2099.8 ms ✓ MathProgBase 947.8 ms ✓ Scratch 2103.9 ms ✓ SentinelArrays 1619.8 ms ✓ StructTypes 1172.2 ms ✓ Compat 1153.1 ms ✓ Preferences 11374.0 ms ✓ MutableArithmetics 1644.6 ms ✓ CommonSubexpressions 843.9 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 807.7 ms ✓ IntervalSets → IntervalSetsRandomExt 808.1 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 984.5 ms ✓ BioGenerics 959.6 ms ✓ CodecZlib 1290.1 ms ✓ Statistics → SparseArraysExt 3799.0 ms ✓ FixedPointNumbers 804.0 ms ✓ IntervalSets → IntervalSetsStatisticsExt 878.3 ms ✓ DiffResults 984.8 ms ✓ AliasTables 989.2 ms ✓ Missings 1039.6 ms ✓ PooledArrays 899.4 ms ✓ LeftChildRightSiblingTrees 1090.4 ms ✓ MethodAnalysis 1499.5 ms ✓ FillArrays → FillArraysSparseArraysExt 969.2 ms ✓ FillArrays → FillArraysStatisticsExt 809.5 ms ✓ ADTypes → ADTypesConstructionBaseExt 1844.7 ms ✓ DifferentiationInterface 1301.6 ms ✓ LogExpFunctions 858.5 ms ✓ TableTraits 1005.2 ms ✓ Adapt 8901.2 ms ✓ FileIO 1504.8 ms ✓ FillArrays → FillArraysPDMatsExt 871.0 ms ✓ Compat → CompatLinearAlgebraExt 932.9 ms ✓ PrecompileTools 1207.8 ms ✓ JLLWrappers 2867.2 ms ✓ Setfield 2667.6 ms ✓ ColorTypes 1341.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1812.6 ms ✓ Tables 1176.2 ms ✓ ArrayInterface 1295.6 ms ✓ Adapt → AdaptSparseArraysExt 2151.0 ms ✓ FilePathsBase 3839.9 ms ✓ DataStructures 2623.0 ms ✓ BioSymbols 3046.9 ms ✓ StringManipulation 13693.4 ms ✓ SIMD 12825.5 ms ✓ StaticArrays 16082.5 ms ✓ Parsers 1440.9 ms ✓ Libffi_jll 1525.6 ms ✓ LZO_jll 1496.2 ms ✓ Bzip2_jll 1573.6 ms ✓ XZ_jll 1478.0 ms ✓ NLopt_jll 1423.4 ms ✓ Rmath_jll 1401.1 ms ✓ OpenSpecFun_jll 1338.3 ms ✓ Xorg_xtrans_jll 1778.2 ms ✓ libpng_jll 1429.2 ms ✓ iso_codes_jll 1169.1 ms ✓ EpollShim_jll 1219.5 ms ✓ Wayland_protocols_jll 1398.8 ms ✓ Libmount_jll 1455.5 ms ✓ Libuuid_jll 1471.3 ms ✓ FriBidi_jll 1377.9 ms ✓ LERC_jll 1392.8 ms ✓ Git_LFS_jll 1454.2 ms ✓ libsass_jll 1418.1 ms ✓ Gumbo_jll 1403.8 ms ✓ Xorg_libXau_jll 1503.4 ms ✓ OpenSSH_jll 1438.4 ms ✓ hicolor_icon_theme_jll 1429.7 ms ✓ Graphite2_jll 1458.1 ms ✓ LLVMOpenMP_jll 1621.2 ms ✓ Libiconv_jll 1421.0 ms ✓ Xorg_libXdmcp_jll 1424.2 ms ✓ Expat_jll 1457.8 ms ✓ JpegTurbo_jll 1397.6 ms ✓ ColorTypes → StyledStringsExt 7994.3 ms ✓ Colors 813.2 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1308.0 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2854.9 ms ✓ FilePathsBase → FilePathsBaseTestExt 985.8 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1586.3 ms ✓ SortingAlgorithms 2928.5 ms ✓ QuadGK 8920.2 ms ✓ BioSequences 37491.1 ms ✓ PrettyTables 17259.5 ms ✓ Automa 1474.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1496.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1648.3 ms ✓ FillArrays → FillArraysStaticArraysExt 1696.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1459.8 ms ✓ Adapt → AdaptStaticArraysExt 13406.2 ms ✓ JSON3 3701.9 ms ✓ JSON 1032.3 ms ✓ InlineStrings → ParsersExt 1063.4 ms ✓ CodecBzip2 1443.1 ms ✓ FreeType2_jll 1482.1 ms ✓ Rmath 4801.0 ms ✓ SpecialFunctions 2192.2 ms ✓ Sass 1239.6 ms ✓ Gumbo 1396.5 ms ✓ adwaita_icon_theme_jll 1832.4 ms ✓ Pixman_jll 1834.4 ms ✓ XML2_jll 1801.8 ms ✓ GettextRuntime_jll 1614.3 ms ✓ Xorg_libxcb_jll 1486.5 ms ✓ Git_jll 1489.0 ms ✓ Wayland_jll 1464.8 ms ✓ Libtiff_jll 1420.3 ms ✓ Graphics 11136.9 ms ✓ FlameGraphs 1359.3 ms ✓ FiniteDiff 4804.6 ms ✓ StatsBase 80509.8 ms ✓ DataFrames 18048.0 ms ✓ FASTX 8992.6 ms ✓ Documenter 3087.1 ms ✓ BenchmarkTools 2466.5 ms ✓ WeakRefStrings 1541.4 ms ✓ Fontconfig_jll 2200.3 ms ✓ HypergeometricFunctions 1308.1 ms ✓ DiffRules 1477.6 ms ✓ Glib_jll 1521.3 ms ✓ Xorg_libX11_jll 1029.9 ms ✓ Git 1453.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1318.8 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1056.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2246.1 ms ✓ FASTX → BioSequencesExt 26803.4 ms ✓ CSV 2875.2 ms ✓ StatsFuns 6444.5 ms ✓ ForwardDiff 1469.8 ms ✓ Graphene_jll 1418.8 ms ✓ Xorg_libXfixes_jll 1419.3 ms ✓ Xorg_libXrender_jll 1895.5 ms ✓ Xorg_libXext_jll 1427.2 ms ✓ Xorg_libxkbfile_jll 1711.0 ms ✓ gdk_pixbuf_jll 4553.4 ms ✓ DocumenterTools 4749.0 ms ✓ StatsModels 9767.3 ms ✓ Distributions 1822.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1459.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 68791.5 ms ✓ MathOptInterface 1509.5 ms ✓ Xorg_libXdamage_jll 1491.9 ms ✓ Xorg_libXcursor_jll 1604.5 ms ✓ Xorg_libXrandr_jll 1578.0 ms ✓ Xorg_libXinerama_jll 1397.4 ms ✓ Xorg_libXi_jll 1496.6 ms ✓ Cairo_jll 1453.7 ms ✓ Libglvnd_jll 1486.4 ms ✓ Xorg_xkbcomp_jll 5856.5 ms ✓ GLM 3465.1 ms ✓ Distributions → DistributionsTestExt 1868.2 ms ✓ NLSolversBase 7323.9 ms ✓ NLopt 1566.3 ms ✓ HarfBuzz_jll 1524.5 ms ✓ Libepoxy_jll 1381.0 ms ✓ Xorg_xkeyboard_config_jll 2479.0 ms ✓ LineSearches 28203.3 ms ✓ PhyloNetworks 1595.7 ms ✓ Pango_jll 1456.5 ms ✓ xkbcommon_jll 6969.9 ms ✓ Optim 2498.7 ms ✓ Cairo 1614.0 ms ✓ Librsvg_jll 1648.2 ms ✓ GTK4_jll 6578.0 ms ✓ Optim → OptimMOIExt 47166.3 ms ✓ Gtk4  (julia:884): Gtk-WARNING **: 03:06:27.569: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 24108.0 ms ✓ GtkObservables  (julia:893): Gtk-WARNING **: 03:07:03.073: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 19742.3 ms ✓ ProfileView 22683.4 ms ✓ PhyNEST 212 dependencies successfully precompiled in 838 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ ProfileView │ (julia:893): Gtk-WARNING **: 03:07:03.073: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ GtkObservables │ (julia:884): Gtk-WARNING **: 03:06:27.569: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 850.7s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_GvUh03/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [429524aa] Optim v1.13.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.2 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GvUh03/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.6 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.1 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.11 [8710efd8] GtkObservables v2.2.1 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.48.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [c46f51b8] ProfileView v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.7 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [7746bdde] Glib_jll v2.86.2+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [079eb43e] NLopt_jll v2.10.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [2381bf8a] Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.6+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b437f822] adwaita_icon_theme_jll v43.0.1+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [059c91fe] hicolor_icon_theme_jll v0.18.0+0 [bf975903] iso_codes_jll v4.18.0+0 [b53b4c65] libpng_jll v1.6.54+0 [47bcb7c8] libsass_jll v3.6.6+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests...  (julia:1346): Gtk-WARNING **: 03:18:44.015: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id  (julia:1353): Gtk-WARNING **: 03:19:16.225: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 2 dependencies had output during precompilation: ┌ GtkObservables │ (julia:1346): Gtk-WARNING **: 03:18:44.015: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ ProfileView │ (julia:1353): Gtk-WARNING **: 03:19:16.225: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.5s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.1s Test Summary: | Pass Total Time Testing Method-of-moment estimates of speciation times | 1500 1500 0.0s Testing PhyNEST tests passed Testing completed after 759.21s PkgEval succeeded after 1682.57s