Package evaluation to test MolecularGraphKernels on Julia 1.14.0-DEV.1613 (8dab3f0623*) started at 2026-01-25T21:46:10.607 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.77s ################################################################################ # Installation # Installing MolecularGraphKernels... Resolving package versions... Installed MacroTools ──────────── v0.5.16 Installed HarfBuzz_jll ────────── v8.5.1+0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed Libuuid_jll ─────────── v2.41.2+0 Installed RDKitMinimalLib ─────── v1.2.0 Installed DataStructures ──────── v0.18.22 Installed MolecularGraphKernels ─ v0.11.0 Installed JLD2 ────────────────── v0.4.55 Installed Libmount_jll ────────── v2.41.2+0 Installed DelimitedFiles ──────── v1.9.1 Installed Cairo_jll ───────────── v1.18.5+0 Installed PeriodicTable ───────── v1.2.1 Installed RDKit_jll ───────────── v2022.9.5+0 Installed Memoization ─────────── v0.2.2 Installed ArnoldiMethod ───────── v0.2.0 Installed Cairo ───────────────── v1.1.1 Installed TranscodingStreams ──── v0.11.3 Installed Xorg_libXau_jll ─────── v1.0.13+0 Installed Compat ──────────────── v4.18.1 Installed OrderedCollections ──── v1.8.1 Installed Xorg_libX11_jll ─────── v1.8.12+0 Installed Combinatorics ───────── v1.1.0 Installed Graphite2_jll ───────── v1.3.15+0 Installed MolecularGraph ──────── v0.13.0 Installed DataAPI ─────────────── v1.16.0 Installed Nullables ───────────── v1.0.0 Installed Statistics ──────────── v1.11.1 Installed PrecompileTools ─────── v1.3.3 Installed ProgressMeter ───────── v1.11.0 Installed Measures ────────────── v0.3.3 Installed PrecompileSignatures ── v3.0.3 Installed Colors ──────────────── v0.12.11 Installed StringEncodings ─────── v0.3.7 Installed PropertyDicts ───────── v0.1.2 Installed Libffi_jll ──────────── v3.4.7+0 Installed StaticArraysCore ────── v1.4.4 Installed FileIO ──────────────── v1.17.1 Installed Pixman_jll ──────────── v0.44.2+0 Installed StaticArrays ────────── v1.9.16 Installed GraphPlot ───────────── v0.5.2 Installed Fontconfig_jll ──────── v2.17.1+0 Installed Expat_jll ───────────── v2.7.3+0 Installed GettextRuntime_jll ──── v0.22.4+0 Installed libpng_jll ──────────── v1.6.54+0 Installed NaNMath ─────────────── v1.1.3 Installed Graphics ────────────── v1.1.3 Installed Unmarshal ───────────── v0.4.4 Installed FriBidi_jll ─────────── v1.0.17+0 Installed ColorTypes ──────────── v0.11.5 Installed coordgenlibs_jll ────── v3.0.2+0 Installed SimpleTraits ────────── v0.9.5 Installed Glib_jll ────────────── v2.86.2+0 Installed Requires ────────────── v1.3.1 Installed Parsers ─────────────── v2.8.3 Installed Xorg_libXrender_jll ─── v0.9.12+0 Installed JSON ────────────────── v0.21.4 Installed Xorg_libxcb_jll ─────── v1.17.1+0 Installed Unitful ─────────────── v1.27.0 Installed libinchi_jll ────────── v1.6.0+0 Installed Xorg_libXdmcp_jll ───── v1.1.6+0 Installed LZO_jll ─────────────── v2.10.3+0 Installed Reexport ────────────── v1.2.2 Installed YAML ────────────────── v0.4.16 Installed FixedPointNumbers ───── v0.8.5 Installed MetaGraphs ──────────── v0.7.2 Installed LazyJSON ────────────── v0.2.2 Installed Preferences ─────────── v1.5.1 Installed FreeType2_jll ───────── v2.13.4+0 Installed Missings ────────────── v1.2.0 Installed Libiconv_jll ────────── v1.18.0+0 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed JLLWrappers ─────────── v1.7.1 Installed Xorg_libXext_jll ────── v1.3.7+0 Installed Pango_jll ───────────── v1.57.0+0 Installed IterTools ───────────── v1.10.0 Installed Xorg_xtrans_jll ─────── v1.6.0+0 Installed Inflate ─────────────── v0.1.5 Installed boost_jll ───────────── v1.76.0+1 Installed Compose ─────────────── v0.9.6 Installed Graphs ──────────────── v1.9.0 Installing 30 artifacts Installed artifact Xorg_libXau 36.6 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact libpng 328.7 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libffi 44.2 KiB Installed artifact FriBidi 78.9 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Expat 283.3 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Graphite2 120.2 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Cairo 2.2 MiB Installed artifact Libuuid 3.7 MiB Installed artifact coordgenlibs 303.6 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact LZO 208.9 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Libmount 6.5 MiB Installed artifact Pango 2.0 MiB Installed artifact libinchi 933.4 KiB Installed artifact Glib 7.7 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact boost 22.1 MiB Installed artifact RDKit 56.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [bf3818bd] + MolecularGraphKernels v0.11.0 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [ec485272] + ArnoldiMethod v0.2.0 [159f3aea] + Cairo v1.1.1 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [a81c6b42] + Compose v0.9.6 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [5789e2e9] + FileIO v1.17.1 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [a2cc645c] + GraphPlot v0.5.2 [a2bd30eb] + Graphics v1.1.3 ⌃ [86223c79] + Graphs v1.9.0 [d25df0c9] + Inflate v0.1.5 [c8e1da08] + IterTools v1.10.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [fc18253b] + LazyJSON v0.2.2 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.3 [6fafb56a] + Memoization v0.2.2 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 ⌅ [6c89ec66] + MolecularGraph v0.13.0 [bf3818bd] + MolecularGraphKernels v0.11.0 [77ba4419] + NaNMath v1.1.3 [4d1e1d77] + Nullables v1.0.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [91cefc8d] + PrecompileSignatures v3.0.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 ⌅ [f8a19df8] + PropertyDicts v0.1.2 [44044271] + RDKitMinimalLib v1.2.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.27.0 [cbff2730] + Unmarshal v0.4.4 [ddb6d928] + YAML v0.4.16 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.2+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [03d1d220] + RDKit_jll v2022.9.5+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] + boost_jll v1.76.0+1 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.54+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 28.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5059.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4703.8 ms ✓ MacroTools 1120.7 ms ✓ ANSIColoredPrinters 960.6 ms ✓ Reexport 1521.9 ms ✓ Statistics 903.5 ms ✓ DataAPI 905.6 ms ✓ Measures 977.2 ms ✓ StaticArraysCore 1296.6 ms ✓ URIs 1241.1 ms ✓ Requires 934.0 ms ✓ LazilyInitializedFields 1070.1 ms ✓ Nullables 1330.9 ms ✓ OrderedCollections 2622.6 ms ✓ PrecompileSignatures 941.3 ms ✓ BitFlags 1183.3 ms ✓ DocStringExtensions 1186.6 ms ✓ AbstractTrees 1176.7 ms ✓ IterTools 1853.1 ms ✓ ConcurrentUtilities 2310.8 ms ✓ Combinatorics 1205.8 ms ✓ CoverageTools 1131.9 ms ✓ Inflate 1379.7 ms ✓ TranscodingStreams 960.9 ms ✓ SimpleBufferStream 1113.6 ms ✓ TextWrap 943.6 ms ✓ PropertyDicts 970.7 ms ✓ IOCapture 1091.7 ms ✓ NaNMath 1038.1 ms ✓ DelimitedFiles 1895.2 ms ✓ ProgressMeter 1006.2 ms ✓ Scratch 1137.3 ms ✓ LoggingExtras 33106.5 ms ✓ Unitful 1144.9 ms ✓ Compat 1132.8 ms ✓ Preferences 1679.9 ms ✓ ExceptionUnwrapping 886.9 ms ✓ Memoization 3108.0 ms ✓ SimpleTraits 3922.5 ms ✓ FixedPointNumbers 1382.0 ms ✓ Statistics → SparseArraysExt 979.3 ms ✓ Missings 9104.4 ms ✓ FileIO 5172.3 ms ✓ RegistryInstances 3619.5 ms ✓ OpenSSL 1797.2 ms ✓ MarkdownAST 1085.7 ms ✓ CodecZlib 2009.1 ms ✓ ArgParse 2278.6 ms ✓ Unitful → PrintfExt 1955.4 ms ✓ Unitful → NaNMathExt 887.0 ms ✓ Compat → CompatLinearAlgebraExt 1295.6 ms ✓ JLLWrappers 951.0 ms ✓ PrecompileTools 4534.1 ms ✓ ColorTypes 5827.9 ms ✓ PeriodicTable 7180.8 ms ✓ Aqua 3907.0 ms ✓ DataStructures 1677.3 ms ✓ boost_jll 1537.3 ms ✓ Libmount_jll 1487.8 ms ✓ Libffi_jll 1641.8 ms ✓ LZO_jll 1449.6 ms ✓ Graphite2_jll 1451.4 ms ✓ Libuuid_jll 1458.6 ms ✓ FriBidi_jll 1502.0 ms ✓ libpng_jll 1469.7 ms ✓ Bzip2_jll 1487.7 ms ✓ LLVMOpenMP_jll 1556.6 ms ✓ libinchi_jll 1501.8 ms ✓ Git_LFS_jll 1491.4 ms ✓ Libiconv_jll 1502.5 ms ✓ MbedTLS_jll 1463.2 ms ✓ Xorg_libXau_jll 1479.7 ms ✓ coordgenlibs_jll 1450.7 ms ✓ Xorg_libXdmcp_jll 1610.2 ms ✓ OpenSSH_jll 1464.3 ms ✓ Expat_jll 1292.1 ms ✓ Xorg_xtrans_jll 14143.3 ms ✓ StaticArrays 16922.3 ms ✓ Parsers 46452.8 ms ✓ JLD2 8769.8 ms ✓ Colors 2312.9 ms ✓ FreeType2_jll 1638.1 ms ✓ Pixman_jll 1329.0 ms ✓ StringEncodings 1824.3 ms ✓ GettextRuntime_jll 2321.7 ms ✓ MbedTLS 1745.8 ms ✓ Xorg_libxcb_jll 1705.7 ms ✓ Git_jll 1464.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 3910.0 ms ✓ ArnoldiMethod 3999.4 ms ✓ JSON 1618.3 ms ✓ Graphics 1836.9 ms ✓ RDKit_jll 1927.6 ms ✓ Fontconfig_jll 2749.6 ms ✓ YAML 2059.2 ms ✓ Glib_jll 26530.7 ms ✓ HTTP 1534.4 ms ✓ Xorg_libX11_jll 1000.8 ms ✓ Git 10595.7 ms ✓ Graphs 3976.2 ms ✓ LazyJSON 6869.1 ms ✓ Compose 1532.5 ms ✓ RDKitMinimalLib 6790.1 ms ✓ FileIO → HTTPExt 5156.6 ms ✓ Coverage 1449.9 ms ✓ Xorg_libXrender_jll 1432.5 ms ✓ Xorg_libXext_jll 46920.4 ms ✓ Documenter 9365.5 ms ✓ MetaGraphs WARNING: method definition for unmarshal at /home/pkgeval/.julia/packages/Unmarshal/2eEFB/src/Unmarshal.jl:67 declares type variable N but does not use it. 1367.9 ms ✓ Unmarshal 5092.6 ms ✓ GraphPlot 2508.2 ms ✓ Cairo_jll 16317.4 ms ✓ MolecularGraph 1588.9 ms ✓ HarfBuzz_jll 1513.3 ms ✓ Pango_jll 2541.4 ms ✓ Cairo WARNING: Constructor for type "MetaGraph" was extended in `MolecularGraphKernels` without explicit qualification or import.  NOTE: Assumed "MetaGraph" refers to `MetaGraphs.MetaGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MetaGraph end`.  Hint: To silence the warning, qualify `MetaGraph` as `MetaGraphs.MetaGraph` in the method signature or explicitly `import MetaGraphs: MetaGraph`. WARNING: Constructor for type "SimpleGraph" was extended in `MolecularGraphKernels` without explicit qualification or import.  NOTE: Assumed "SimpleGraph" refers to `Graphs.SimpleGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`.  Hint: To silence the warning, qualify `SimpleGraph` as `Graphs.SimpleGraph` in the method signature or explicitly `import Graphs: SimpleGraph`. 19859.6 ms ✓ MolecularGraphKernels 115 dependencies successfully precompiled in 464 seconds. 38 already precompiled. 2 dependencies had output during precompilation: ┌ Unmarshal │ WARNING: method definition for unmarshal at /home/pkgeval/.julia/packages/Unmarshal/2eEFB/src/Unmarshal.jl:67 declares type variable N but does not use it. └ ┌ MolecularGraphKernels │ WARNING: Constructor for type "MetaGraph" was extended in `MolecularGraphKernels` without explicit qualification or import. │ NOTE: Assumed "MetaGraph" refers to `MetaGraphs.MetaGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MetaGraph end`. │ Hint: To silence the warning, qualify `MetaGraph` as `MetaGraphs.MetaGraph` in the method signature or explicitly `import MetaGraphs: MetaGraph`. │ WARNING: Constructor for type "SimpleGraph" was extended in `MolecularGraphKernels` without explicit qualification or import. │ NOTE: Assumed "SimpleGraph" refers to `Graphs.SimpleGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`. │ Hint: To silence the warning, qualify `SimpleGraph` as `Graphs.SimpleGraph` in the method signature or explicitly `import Graphs: SimpleGraph`. └ Precompilation completed after 482.96s ################################################################################ # Testing # Testing MolecularGraphKernels Status `/tmp/jl_FKeDku/Project.toml` [4c88cf16] Aqua v0.8.14 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.1.0 ⌃ [a2441757] Coverage v1.7.0 [e30172f5] Documenter v1.16.1 ⌃ [86223c79] Graphs v1.9.0 [b5f81e59] IOCapture v1.0.0 ⌅ [626554b9] MetaGraphs v0.7.2 ⌅ [6c89ec66] MolecularGraph v0.13.0 [bf3818bd] MolecularGraphKernels v0.11.0 [44044271] RDKitMinimalLib v1.2.0 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_FKeDku/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [4c88cf16] Aqua v0.8.14 [c7e460c6] ArgParse v1.2.0 ⌅ [ec485272] ArnoldiMethod v0.2.0 [d1d4a3ce] BitFlags v0.1.9 [159f3aea] Cairo v1.1.1 [944b1d66] CodecZlib v0.7.8 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [a81c6b42] Compose v0.9.6 [f0e56b4a] ConcurrentUtilities v2.5.0 ⌃ [a2441757] Coverage v1.7.0 [c36e975a] CoverageTools v1.3.2 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.17.1 [53c48c17] FixedPointNumbers v0.8.5 [d7ba0133] Git v1.5.0 ⌅ [a2cc645c] GraphPlot v0.5.2 [a2bd30eb] Graphics v1.1.3 ⌃ [86223c79] Graphs v1.9.0 [cd3eb016] HTTP v1.10.19 [b5f81e59] IOCapture v1.0.0 [d25df0c9] Inflate v0.1.5 [c8e1da08] IterTools v1.10.0 ⌅ [033835bb] JLD2 v0.4.55 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0e77f7df] LazilyInitializedFields v1.3.0 [fc18253b] LazyJSON v0.2.2 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.3 [6fafb56a] Memoization v0.2.2 ⌅ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 ⌅ [6c89ec66] MolecularGraph v0.13.0 [bf3818bd] MolecularGraphKernels v0.11.0 [77ba4419] NaNMath v1.1.3 [4d1e1d77] Nullables v1.0.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [91cefc8d] PrecompileSignatures v3.0.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 ⌅ [f8a19df8] PropertyDicts v0.1.2 [44044271] RDKitMinimalLib v1.2.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.3.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.27.0 [cbff2730] Unmarshal v0.4.4 [ddb6d928] YAML v0.4.16 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [c8ffd9c3] MbedTLS_jll 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new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: method definition for unmarshal at /home/pkgeval/.julia/packages/Unmarshal/2eEFB/src/Unmarshal.jl:67 declares type variable N but does not use it. WARNING: Constructor for type "MetaGraph" was extended in `MolecularGraphKernels` without explicit qualification or import.  NOTE: Assumed "MetaGraph" refers to `MetaGraphs.MetaGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function MetaGraph end`.  Hint: To silence the warning, qualify `MetaGraph` as `MetaGraphs.MetaGraph` in the method signature or explicitly `import MetaGraphs: MetaGraph`. WARNING: Constructor for type "SimpleGraph" was extended in `MolecularGraphKernels` without explicit qualification or import.  NOTE: Assumed "SimpleGraph" refers to `Graphs.SimpleGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`.  Hint: To silence the warning, qualify `SimpleGraph` as `Graphs.SimpleGraph` in the method signature or explicitly `import Graphs: SimpleGraph`. 2 dependencies had output during precompilation: ┌ MolecularGraphKernels │ [Output was shown above] └ ┌ Unmarshal │ WARNING: method definition for unmarshal at /home/pkgeval/.julia/packages/Unmarshal/2eEFB/src/Unmarshal.jl:67 declares type variable N but does not use it. └ WARNING: Method definition PNG(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PNG), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition PDF(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PDF), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition PS(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PS), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. o o 8 8 .oPYo. 8 o o 8 8b d8 8 8 8 8 8 8 .P 8 8`b d'8 .oPYo. 8 .oPYo. .oPYo. o o 8 .oPYo. oPYo. 8 oPYo. .oPYo. .oPYo. 8oPYo. o8ob' .oPYo. oPYo. odYo. .oPYo. 8 .oPYo. 8 `o' 8 8 8 8 8oooo8 8 ' 8 8 8 .oooo8 8 `' 8 oo 8 `' .oooo8 8 8 8 8 8 `b 8oooo8 8 `' 8' `8 8oooo8 8 Yb.. 8 8 8 8 8 8. 8 . 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8. 8 8 8 8. 8 'Yb. 8 8 `YooP' 8 `Yooo' `YooP' `YooP' 8 `YooP8 8 `YooP8 8 `YooP8 8YooP' 8 8 8 8 `Yooo' 8 8 8 `Yooo' 8 `YooP' ..::::..:.....:..:.....::.....::.....:..:.....:..:::::....8 ..:::::.....:8 ....:..:::..:..::..:.....:..::::..::..:.....:..:.....::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::8 :::::::::::::8 :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..:::::::::::::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::: Test Summary: | Pass Total Time __init__ | 1 1 0.7s Test Summary: | Pass Total Time ProductGraph Interface | 18 18 22.1s Test Summary: | Pass Total Time isomorphism detection | 6 6 13.3s MetaGraphs | 4 4 2.1s Adjacency matrix vs ProductGraph | 2 2 11.2s Test Summary: | Pass Total Time graph conversion | 6 6 0.6s GraphMol to MetaGraph | 4 4 0.3s ProductGraph to ProductGraph | 1 1 0.3s ProductGraph to adjacency matrix | 1 1 0.0s Test Summary: | Pass Total Time direct product graph | 1 1 0.7s Test Summary: | Pass Total Time modular product graph | 5 5 1.5s Test Summary: | Pass Total Time product graph adjacency matrices | 8 8 1.0s MolecularGraphKernels.Direct | 4 4 0.1s MolecularGraphKernels.Modular | 4 4 0.9s Test Summary: | Pass Total Time SMILES flexibility and symmetry | 30 30 0.3s MolecularGraphKernels.Modular | 15 15 0.3s MolecularGraphKernels.Direct | 15 15 0.0s Test Summary: | Pass Total Time Type Flexibility | 2 2 0.0s MolecularGraphKernels.Modular | 1 1 0.0s MolecularGraphKernels.Direct | 1 1 0.0s Test Summary: | Pass Total Time con_sub_g | 14 14 20.8s Test Summary: | Pass Total Time Graph Kernels | 13 13 16.4s Random Walk | 6 6 2.2s ethanol-acetic acid test (EZ to count) | 4 4 5.4s Connected Common Subgraph Isomorphism | 2 2 6.5s All-Connected Graphlet Kernel | 1 1 2.3s ◐ Pushing jobs to queue Time: 0:00:00 ✓ Pushing jobs to queue Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:01 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:03 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time Gram matrix | 16 16 18.8s Random Walk Kernel | 4 4 10.5s Connected Common Subgraph Isomorphism Kernel | 7 7 5.1s Normalization | 1 1 1.1s Time Limit | 1 1 0.3s Kernel vector | 3 3 1.8s Test Summary: | Pass Total Time VizGraphKwargs | 4 4 0.3s [ Info: MetaGraph test visualization in benzene.pdf [ Info: Direct Product Graph test visualization in dpg.pdf [ Info: Modular Product Graph test visualization in mpg.pdf Test Summary: | Pass Total Time Graph Types | 6 6 47.9s MetaGraph | 2 2 9.8s Direct Product Graph | 2 2 3.0s Modular Product Graph | 2 2 3.0s [ Info: spring test visualization in spring.pdf [ Info: circular test visualization in circular.pdf [ Info: spectral test visualization in spectral.pdf Test Summary: | Pass Total Time Graph Plot Styles | 7 7 1.5s spring | 2 2 0.0s circular | 2 2 0.0s spectral | 2 2 1.0s bogus_style | 1 1 0.0s [ Info: edge mask test visualization in edge_mask.pdf [ Info: node mask test visualization in node_mask.pdf Test Summary: | Pass Total Time Alpha Mask | 4 4 1.4s edges | 2 2 0.7s nodes | 2 2 0.7s [ Info: example test visualization in bee-tox.pdf Test Summary: | Pass Total Time Examples | 2 2 0.4s example | 2 2 0.0s [ Info: random color test visualization in custom-style.pdf Test Summary: | Pass Total Time Custom style functions | 2 2 2.3s random color | 2 2 1.9s Test Summary: | Pass Total Time MACCS Fingerprint | 1 1 3.1s Test Summary: | Pass Total Time misc | 5 5 2.2s display | 1 1 1.0s MPG isomorphic subgraphs | 4 4 1.2s ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl:680 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Doctests: MolecularGraphKernels | 1 1 37.0s Testing MolecularGraphKernels tests passed Testing completed after 578.93s PkgEval succeeded after 1137.88s